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Revealing the Relation Between Structure of Chloroplast Genomes and Host Taxonomy

  • Michael SadovskyEmail author
  • Anna Chernyshova
Conference paper
Part of the Springer Proceedings in Complexity book series (SPCOM)

Abstract

The distribution of chloroplast genomes in 63-dimensional space of triplet frequencies was studied, in connection to the taxonomy correlation to the clusters observed in the distribution. That latter was developed through K-means implementation, for the number of classes varying from 2 to 8. The clade composition of those clusters has been analyzed. Unexpectedly high regularity in clades occupation of different clusters has been found thus proving very high synchrony in evolution of two physically independent genetic entities (chloroplasts vs. nuclear genomes): the proximity in frequency space was determined over the organelle genomes, while the proximity in taxonomy was determined morphologically.

Keywords

Chloroplast Genome Nuclear Genome Symbol Sequence Final Distribution Unsupervised Classification 
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.

Notes

Acknowledgments

This work was partly supported by a research grant No. 14.Y26.31.0004 from the Government of the Russian Federation.

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Copyright information

© Springer International Publishing Switzerland 2016

Authors and Affiliations

  1. 1.Institute of Computational Modelling SB RASKrasnoyarskRussia
  2. 2.Siberian Federal UniversityKrasnoyarskRussia

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