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Association Mapping of LpCCR1 with Lignin Content and Cell Wall Digestibility of Perennial Ryegrass

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Breeding in a World of Scarcity

Abstract

In perennial ryegrass (Lolium perenne), a decrease of lignin content will improve ruminal digestibility and increase nutritional value. In order to identify molecular markers that can be used to breed for improved cell wall digestibility, an association mapping study was conducted with LpCCR1, a candidate gene known to be involved in monolignol biosynthesis. A high level of diversity was discovered in this gene, with LD decaying over small distances. An intronic SNP was significantly associated with cell wall digestibility and Klason lignin content of stem material, and is therefore a potential candidate for use in marker assisted breeding.

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References

  • Frame J (1991) Herbage production and quality of a range of secondary grass species at five rates of fertilizer nitrogen application. Grass Forage Sci 46:139–151.

    Article  CAS  Google Scholar 

  • Goering HK, Van Soest PJ (1970) Forage fiber analyses (apparatus, reagants, procedures, and some applications). Agric Handb 379:1–24.

    Google Scholar 

  • Humphreys MO, Feuerstein U, Vandewalle M, Baert J (2010) Ryegrasses. In: Boller B, Posselt UK, Veronesi F (eds) Fodd. Crop. Amenity Grasses. Springer New York, New York, NY, pp 211–260

    Google Scholar 

  • Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore M a, Buckler ES, Zhang Z (2012) GAPIT: genome association and prediction integrated tool. Bioinformatics 28:2397–9. doi: 10.1093/bioinformatics/bts444

    Google Scholar 

  • Oba M, Allen MS (1999) Evaluation of the importance of the digestibility of neutral detergent fiber from forage: effects on dry matter intake and milk yield of dairy cows. J Dairy Sci 82:589–96. doi: 10.3168/jds.S0022-0302(99)75271-9

    Article  CAS  PubMed  Google Scholar 

  • Raj A, Stephens M, Pritchard JK (2014) fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets. Genetics 197:573–89. doi: 10.1534/genetics.114.164350

    Article  PubMed  PubMed Central  Google Scholar 

  • Ruttink T, Veeckman E, Haegeman A, van Parijs F, Van Glabeke S, Muylle H, Vandepoele K, Byrne S, Asp T, Roldán-Ruiz I (2015) Probing genome diversity in natural and breeding populations of Lolium perenne. Plant Anim. Genome Conf. PAG XXIII

    Google Scholar 

  • Tu Y, Rochfort S, Liu Z, Ran Y, Griffith M, Badenhorst P, Louie G V, Bowman ME, Smith KF, Noel JP, Mouradov A, Spangenberg G (2010) Functional analyses of caffeic acid O-methyltransferase and cinnamoyl-CoA-reductase genes from perennial ryegrass (Lolium perenne). Plant Cell 22:3357–73. doi: 10.1105/tpc.109.072827

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Van Parijs FRD, Ruttink T, Boerjan W, Haesaert G, Byrne SL, Asp T, Roldán-Ruiz I, Muylle H (2015) Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne. Plant Biol 1–32. doi: 10.1111/plb.12316

    Google Scholar 

  • VanRaden PM (2008) Efficient methods to compute genomic predictions. J Dairy Sci 91:4414–23. doi: 10.3168/jds.2007-0980

    Article  CAS  PubMed  Google Scholar 

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Correspondence to H. Muylle .

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van Parijs, F.R.D., Ruttink, T., Haesaert, G., Roldán-Ruiz, I., Muylle, H. (2016). Association Mapping of LpCCR1 with Lignin Content and Cell Wall Digestibility of Perennial Ryegrass. In: Roldán-Ruiz, I., Baert, J., Reheul, D. (eds) Breeding in a World of Scarcity. Springer, Cham. https://doi.org/10.1007/978-3-319-28932-8_34

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