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GPU Acceleration of Monte Carlo Simulation at the Cellular and DNA Levels

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Part of the book series: Smart Innovation, Systems and Technologies ((SIST,volume 45))

Abstract

Geant4-DNA is an extension of the general purpose Geant4 Monte Carlo simulation toolkit. It can simulate particle-matter physical interactions down to very low energies in liquid water. The simulation in that energy scale needs enormous computing time since it simulates all physical interactions following a discrete approach. This work presents the implementation of the physics processes/models of the Geant4-DNA extension in GPU architecture. We observed impressive performance gain with the same physics accuracy as existing methods.

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Acknowledgments

This work was supported by JSPS KAKENHI Grant 25246044, Japan-U.S. Cooperation in Research and Development in Science and Technology, and by the U.S. Department of Energy contract number DE-AC02-76SF00515. This work was partly supported by the Associated International Laboratory KEK (Japan)—CNRS (France)—CEA (France) “France-Japan Particle Physics Laboratory (FJPPL)”. The authors would like to thank NVIDIA for their generous support of this project and the CUDA Center of Excellence at Stanford University.

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Correspondence to Shogo Okada .

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Okada, S. et al. (2016). GPU Acceleration of Monte Carlo Simulation at the Cellular and DNA Levels. In: Chen, YW., Torro, C., Tanaka, S., Howlett, R., C. Jain, L. (eds) Innovation in Medicine and Healthcare 2015. Smart Innovation, Systems and Technologies, vol 45. Springer, Cham. https://doi.org/10.1007/978-3-319-23024-5_29

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  • DOI: https://doi.org/10.1007/978-3-319-23024-5_29

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-23023-8

  • Online ISBN: 978-3-319-23024-5

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