Epigenetic Biomarkers of Breast Cancer Risk: Across the Breast Cancer Prevention Continuum
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Abstract
Epigenetic biomarkers, such as DNA methylation, can increase cancer risk through altering gene expression. The Cancer Genome Atlas (TCGA) Network has demonstrated breast cancer-specific DNA methylation signatures. DNA methylation signatures measured at the time of diagnosis may prove important for treatment options and in predicting disease-free and overall survival (tertiary prevention). DNA methylation measurement in cell free DNA may also be useful in improving early detection by measuring tumor DNA released into the blood (secondary prevention). Most evidence evaluating the use of DNA methylation markers in tertiary and secondary prevention efforts for breast cancer comes from studies that are cross-sectional or retrospective with limited corresponding epidemiologic data, raising concerns about temporality. Few prospective studies exist that are large enough to address whether DNA methylation markers add to the prediction of tertiary and secondary outcomes over and beyond standard clinical measures. Determining the role of epigenetic biomarkers in primary prevention can help in identifying modifiable pathways for targeting interventions and reducing disease incidence. The potential is great for DNA methylation markers to improve cancer outcomes across the prevention continuum. Large, prospective epidemiological studies will provide essential evidence of the overall utility of adding these markers to primary prevention efforts, screening, and clinical care.
Keywords
Biomarker Breast cancer DNA methylation Plasma Prevention Prognosis Recurrence Serum Survival Breast tissuesReferences
- 1.Siegel R, Ma J, Zou Z, Jemal A (2014) Cancer statistics, 2014. CA Cancer J Clin 64(1):9–29. doi:10.3322/caac.21208PubMedCrossRefGoogle Scholar
- 2.Johnson RH, Chien FL, Bleyer A (2013) Incidence of breast cancer with distant involvement among women in the United States, 1976 to 2009. J Am Med Assoc 309(8):800–805. doi:10.1001/jama.2013.776CrossRefGoogle Scholar
- 3.Murphy M (2010) Mammography screening for breast cancer. J Am Med Assoc 303:166–167CrossRefGoogle Scholar
- 4.Hudis CA (2007) Trastuzumab—mechanism of action and use in clinical practice. N Engl J Med 357(1):39–51. doi:10.1056/NEJMra043186PubMedCrossRefGoogle Scholar
- 5.Shantakumar S, Terry MB, Paykin A, Teitelbaum SL, Britton JA, Moorman PG, Kritchevsky SB, Neugut AI, Gammon MD (2007) Age and menopausal effects of hormonal birth control and hormone replacement therapy in relation to breast cancer risk. Am J Epidemiol 165(10):1187–1198. doi:kwm006 [pii] 10.1093/aje/kwm006PubMedCrossRefGoogle Scholar
- 6.Quante A, Whittemore A, Shriver T, Strauch K, Terry M (2012) Breast cancer risk assessment across the risk continuum: genetic and nongenetic risk factors contributing to differential model performance. Breast Cancer Res 14(6):R144PubMedPubMedCentralCrossRefGoogle Scholar
- 7.Hammond ME, Hayes DF, Dowsett M, Allred DC, Hagerty KL, Badve S, Fitzgibbons PL, Francis G, Goldstein NS, Hayes M, Hicks DG, Lester S, Love R, Mangu PB, McShane L, Miller K, Osborne CK, Paik S, Perlmutter J, Rhodes A, Sasano H, Schwartz JN, Sweep FC, Taube S, Torlakovic EE, Valenstein P, Viale G, Visscher D, Wheeler T, Williams RB, Wittliff JL, Wolff AC (2010) American Society of Clinical Oncology/College of American Pathologists guideline recommendations for immunohistochemical testing of estrogen and progesterone receptors in breast cancer. J Clin Oncol: Off J Am Soc Clin Oncol 28(16):2784–2795. doi:10.1200/JCO.2009.25.6529CrossRefGoogle Scholar
- 8.Feinberg AP (2004) The epigenetics of cancer etiology. Semin Cancer Biol 14(6):427–432. doi:S1044579X04000483 [pii] 10.1016/j.semcancer.2004.06.005 [doi]PubMedCrossRefGoogle Scholar
- 9.Jones PA, Baylin SB (2002) The fundamental role of epigenetic events in cancer. Nat Rev Genet 3(6):415–428PubMedGoogle Scholar
- 10.Feinberg AP, Vogelstein B (1983) Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature 301(5895):89–92PubMedCrossRefGoogle Scholar
- 11.Tycko B (2003) Genetic and epigenetic mosaicism in cancer precursor tissues. Ann New York Acad Sci 983(1):43–54. doi:10.1111/j.1749–6632.2003.tb05961.xCrossRefGoogle Scholar
- 12.Ehrlich M (2002) DNA methylation in cancer: too much, but also too little. Oncogene 21(35):5400–5413. doi:10.1038/sj.onc.1205651 [doi]PubMedCrossRefGoogle Scholar
- 13.van Hoesel AQ, Sato Y, Elashoff DA, Turner RR, Giuliano AE, Shamonki JM, Kuppen PJK, van de Velde CJH, Hoon DSB (2013) Assessment of DNA methylation status in early stages of breast cancer development. Br J Cancer 108(10):2033–2038. doi:10.1038/bjc.2013.136PubMedPubMedCentralCrossRefGoogle Scholar
- 14.Hoque MO, Feng Q, Toure P, Dem A, Critchlow CW, Hawes SE, Wood T, Jeronimo C, Rosenbaum E, Stern J, Yu M, Trink B, Kiviat NB, Sidransky D (2006) Detection of aberrant methylation of four genes in plasma DNA for the detection of breast cancer. J Clin Oncol 24(26):4262–4269. doi:10.1200/jco.2005.01.3516PubMedCrossRefGoogle Scholar
- 15.Radpour R, Barekati Z, Kohler C, Lv Q, Bürki N, Diesch C, Bitzer J, Zheng H, Schmid S, Zhong XY (2011) Hypermethylation of tumor suppressor genes involved in critical regulatory pathways for developing a blood-based test in breast cancer. PLoS One 6(1):e16080. doi:10.1371/journal.pone.0016080PubMedPubMedCentralCrossRefGoogle Scholar
- 16.Fabian CJ, Kimler BF, Mayo MS, Khan SA (2005) Breast-tissue sampling for risk assessment and prevention. Endocrine-Related Cancer 12(2):185–213. doi:10.1677/erc.1.01000PubMedCrossRefGoogle Scholar
- 17.Wong EM, Southey MC, Fox SB, Brown MA, Dowty JG, Jenkins MA, Giles GG, Hopper JL, Dobrovic A (2011) Constitutional methylation of the BRCA1 promoter is specifically associated with BRCA1 mutation-associated pathology in early-onset breast cancer. Cancer Prev Res 4(1):23–33. doi:10.1158/1940–6207.capr-10-0212CrossRefGoogle Scholar
- 18.Yan PS, Venkataramu C, Ibrahim A, Liu JC, Shen RZ, Diaz NM, Centeno B, Weber F, Leu Y-W, Shapiro CL, Eng C, Yeatman TJ, Huang TH-M (2006) Mapping geographic zones of cancer risk with epigenetic biomarkers in normal breast tissue. Clin Cancer Res 12(22):6626–6636. doi:10.1158/1078-0432.ccr-06-0467PubMedCrossRefGoogle Scholar
- 19.Ma Y, Wang X, Jin H (2013) Methylated DNA and microRNA in body fluids as biomarkers for cancer detection. Int J Mol Sci 14(5):10307–10331PubMedPubMedCentralCrossRefGoogle Scholar
- 20.Widschwendter M, Jones P (2002) DNA methylation and breast carcinogenesis. Oncogene 21:5462–5482PubMedCrossRefGoogle Scholar
- 21.Hanahan D, Weinberg RA (2000) The hallmarks of cancer. Cell 100(1):57–70. doi:http://dx.doi.org/10.1016/S0092-8674(00)81683-9PubMedCrossRefGoogle Scholar
- 22.Robertson KD (2005) DNA methylation and human disease. Nat Rev Genet 6(8):597–610. doi:http://www.nature.com/nrg/journal/v6/n8/suppinfo/nrg1655_S1.html PubMedCrossRefGoogle Scholar
- 23.Kohli RM, Zhang Y (2013) TET enzymes, TDG and the dynamics of DNA demethylation. Nature 502(7472):472–479. doi:10.1038/nature12750PubMedPubMedCentralCrossRefGoogle Scholar
- 24.Mensaert K, Denil S, Trooskens G, Van Criekinge W, Thas O, De Meyer T (2014) Next-generation technologies and data analytical approaches for epigenomics. Environ Mol Mutagen 55(3):155–170. doi:10.1002/em.21841PubMedCrossRefGoogle Scholar
- 25.Fraga M, Esteller M (2002) DNA methylation: a profile of methods and applications. Biotechniques 33:632, 634, 636–649Google Scholar
- 26.Laird PW (2010) Principles and challenges of genome-wide DNA methylation analysis. Nat Rev Genet 11(3):191–203PubMedCrossRefGoogle Scholar
- 27.Shen L, Waterland RA (2007) Methods of DNA methylation analysis. Curr Opin Clin Nutr Metab Care 10(5):576–581PubMedCrossRefGoogle Scholar
- 28.Esteller M (2007) Cancer epigenomics: DNA methylomes and histone-modification maps. Nat Rev Genet 8(4):286–298PubMedCrossRefGoogle Scholar
- 29.Quinlivan EP, Gregory I, Jesse F (2008) DNA methylation determination by liquid chromatography-tandem mass spectrometry using novel biosynthetic [U-15N]deoxycytidine and [U-15N]methyldeoxycytidine internal standards. Nucleic Acids Res 36:e119PubMedPubMedCentralCrossRefGoogle Scholar
- 30.Spruijt CG, Gnerlich F, Smits AH, Pfaffeneder T, Jansen PWTC, Bauer C, Münzel M, Wagner M, Müller M, Khan F, Eberl HC, Mensinga A, Brinkman Arie B, Lephikov K, Müller U, Walter J, Boelens R, van Ingen H, Leonhardt H, Carell T, Vermeulen M (2013) Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives. Cell 152(5):1146–1159. doi:10.1016/j.cell.2013.02.004PubMedCrossRefGoogle Scholar
- 31.Balaghi M, Wagner C (1993) DNA methylation in folate deficiency: use of CpG methylase. Biochem Biophys Res Commun 193(3):1184–1190. doi:http://dx.doi.org/10.1006/bbrc.1993.1750 PubMedCrossRefGoogle Scholar
- 32.Karimi M, Johansson S, Stach D, Corcoran M, Grandér D, Schalling M, Bakalkin G, Lyko F, Larsson C, Ekström TJ (2006) LUMA (LUminometric Methylation Assay)—a high throughput method to the analysis of genomic DNA methylation. Exp Cell Res 312(11):1989–1995. doi:http://dx.doi.org/10.1016/j.yexcr.2006.03.006 PubMedCrossRefGoogle Scholar
- 33.Herman JG, Graff JR, Myöhänen S, Nelkin BD, Baylin SB (1996) Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc Natl Acad Sci U S A 93:9821–9826PubMedPubMedCentralCrossRefGoogle Scholar
- 34.Campan M, Weisenberger D, Trinh B, Laird P (2009) MethyLight. In: Tost J (ed) DNA methylation. Methods in molecular biology, vol 507. New York, N.Y. Humana Press: [London: Springer, distributor], pp 325–337. doi:10.1007/978-1-59745-522-0_23Google Scholar
- 35.Tost J, Jenny D, Gut IG (2003) Analysis and quantification of multiple methylation variable positions in CpG islands by pyrosequencing. Biotechniques 35:152–156PubMedGoogle Scholar
- 36.Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan J-B, Shen R (2011) High density DNA methylation array with single CpG site resolution. Genomics 98(4):288–295. doi:http://dx.doi.org/10.1016/j.ygeno.2011.07.007 PubMedCrossRefGoogle Scholar
- 37.Heijmans BT, Mill J (2012) Commentary: the seven plagues of epigenetic epidemiology. Int J Epidemiol 41(1):74–78. doi:10.1093/ije/dyr225PubMedPubMedCentralCrossRefGoogle Scholar
- 38.Heijmans BT, Kremer D, Tobi EW, Boomsma DI, Slagboom PE (2007) Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus. Hum Mol Genet 16(5):547–554. doi:10.1093/hmg/ddm010PubMedCrossRefGoogle Scholar
- 39.van Vlodrop IJH, Niessen HEC, Derks S, Baldewijns MMLL, van Criekinge W, Herman JG, van Engeland M (2011) Analysis of promoter CpG island hypermethylation in cancer: location, location, location! Clin Cancer Res 17(13):4225–4231. doi:10.1158/1078-0432.ccr-10-3394PubMedCrossRefGoogle Scholar
- 40.Network TCGA (2012) Comprehensive molecular portraits of human breast tumours. Nature 490(7418):61–70. doi:http://www.nature.com/nature/journal/v490/n7418/abs/nature11412.html#supplementary-information CrossRefGoogle Scholar
- 41.Fackler MJ, Umbricht CB, Williams D, Argani P, Cruz L-A, Merino VF, Teo WW, Zhang Z, Huang P, Visvananthan K, Marks J, Ethier S, Gray JW, Wolff AC, Cope LM, Sukumar S (2011) Genome-wide methylation analysis identifies genes specific to breast cancer hormone receptor status and risk of recurrence. Cancer Res 71(19):6195–6207. doi:10.1158/0008-5472.can-11-1630PubMedPubMedCentralCrossRefGoogle Scholar
- 42.Widschwendter M, Siegmund KD, Müller HM, Fiegl H, Marth C, Müller-Holzner E, Jones PA, Laird PW (2004) Association of breast cancer DNA methylation profiles with hormone receptor status and response to tamoxifen. Cancer Res 64(11):3807–3813. doi:10.1158/0008-5472.can-03-3852PubMedCrossRefGoogle Scholar
- 43.Flanagan JM, Cocciardi S, Waddell N, Johnstone CN, Marsh A, Henderson S, Simpson P, da Silva L, Khanna K, Lakhani S, Boshoff C, Chenevix-Trench G (2010) DNA methylome of familial breast cancer identifies distinct profiles defined by mutation status. Am J Hum Genet 86(3):420–433. doi:http://dx.doi.org/10.1016/j.ajhg.2010.02.008 PubMedPubMedCentralCrossRefGoogle Scholar
- 44.Dedeurwaerder S, Desmedt C, Calonne E, Singhal SK, Haibe‐Kains B, Defrance M, Michiels S, Volkmar M, Deplus R, Luciani J, Lallemand F, Larsimont D, Toussaint J, Haussy S, Rothé F, Rouas G, Metzger O, Majjaj S, Saini K, Putmans P, Hames G, van Baren N, Coulie PG, Piccart M, Sotiriou C, Fuks F (2011) DNA methylation profiling reveals a predominant immune component in breast cancers. EMBO Mol Med 3(12):726–741. doi:10.1002/emmm.201100801PubMedPubMedCentralCrossRefGoogle Scholar
- 45.Hill VK, Ricketts C, Bieche I, Vacher S, Gentle D, Lewis C, Maher ER, Latif F (2011) Genome-wide DNA methylation profiling of CpG islands in breast cancer identifies novel genes associated with tumorigenicity. Cancer Res 71(8):2988–2999. doi:10.1158/0008-5472.can-10-4026PubMedCrossRefGoogle Scholar
- 46.Fiegl H, Jones A, Hauser-Kronberger C, Hutarew G, Reitsamer R, Jones RL, Dowsett M, Mueller-Holzner E, Windbichler G, Daxenbichler G, Goebel G, Ensinger C, Jacobs I, Widschwendter M (2008) Methylated NEUROD1 promoter is a marker for chemosensitivity in breast cancer. Clin Cancer Res 14(11):3494–3502. doi:10.1158/1078-0432.ccr-07-4557PubMedCrossRefGoogle Scholar
- 47.Cho YH, Shen J, Gammon MD, Zhang YJ, Wang Q, Gonzalez K, Xu X, Bradshaw PT, Teitelbaum SL, Garbowski G, Hibshoosh H, Neugut AI, Chen J, Santella RM (2012) Prognostic significance of gene-specific promoter hypermethylation in breast cancer patients. Breast Cancer Res Treat 131:197–205. doi:10.1007/s10549-011-1712-yPubMedPubMedCentralCrossRefGoogle Scholar
- 48.Akhoondi S, Lindstrom L, Widschwendter M, Corcoran M, Bergh J, Spruck C, Grander D, Sangfelt O (2010) Inactivation of FBXW7/hCDC4-beta expression by promoter hypermethylation is associated with favorable prognosis in primary breast cancer. Breast Cancer Res 12(6):R105PubMedPubMedCentralCrossRefGoogle Scholar
- 49.Xu X, Gammon M, Zhang Y, Cho Y, Wetmur J, Bradshaw P, Garbowski G, Hibshoosh H, Teitelbaum S, Neugut A, Santella R, Chen J (2010) Gene promoter methylation is associated with increased mortality among women with breast cancer. Breast Cancer Res Treat 121(3):685–692. doi:10.1007/s10549-009-0628-2PubMedPubMedCentralCrossRefGoogle Scholar
- 50.Hartmann O, Spyratos F, Harbeck N, Dietrich D, Fassbender A, Schmitt M, Eppenberger-Castori S, Vuaroqueaux V, Lerebours F, Welzel K, Maier S, Plum A, Niemann S, Foekens JA, Lesche R, Martens JWM (2009) DNA methylation markers predict outcome in node-positive, estrogen receptor-positive breast cancer with adjuvant anthracycline-based chemotherapy. Clin Cancer Res 15(1):315–323. doi:10.1158/1078-0432.ccr-08-0166PubMedCrossRefGoogle Scholar
- 51.Szyf M (2009) Epigenetics, DNA methylation, and chromatin modifying drugs. Annu Rev Pharmacol Toxicol 49(1):243–263. doi:10.1146/annurev-pharmtox-061008-103102PubMedCrossRefGoogle Scholar
- 52.Huang YT, Li FF, Ke C, Li Z, Li ZT, Zou XF, Zheng XX, Chen YP, Zhang H (2013) PTPRO promoter methylation is predictive of poorer outcome for HER2-positive breast cancer: indication for personalized therapy. J Transl Med 11:245. doi:10.1186/1479-5876-11-245PubMedPubMedCentralCrossRefGoogle Scholar
- 53.Lu L, Zhu G, Zhang C, Deng Q, Katsaros D, Mayne ST, Risch HA, Mu L, Canuto EM, Gregori G, Benedetto C, Yu H (2012) Association of large noncoding RNA HOTAIR expression and its downstream intergenic CpG island methylation with survival in breast cancer. Breast Cancer Res Treat 136(3):875–883. doi:10.1007/s10549-012-2314-zPubMedCrossRefGoogle Scholar
- 54.van Hoesel AQ, van de Velde CJ, Kuppen PJ, Liefers GJ, Putter H, Sato Y, Elashoff DA, Turner RR, Shamonki JM, de Kruijf EM, van Nes JG, Giuliano AE, Hoon DS (2012) Hypomethylation of LINE-1 in primary tumor has poor prognosis in young breast cancer patients: a retrospective cohort study. Breast Cancer Res Treat 134(3):1103–1114. doi:10.1007/s10549-012-2038-0PubMedCrossRefGoogle Scholar
- 55.van Hoesel AQ, van de Velde CJ, Kuppen PJ, Putter H, de Kruijf EM, van Nes JG, Giuliano AE, Hoon DS (2012) Primary tumor classification according to methylation pattern is prognostic in patients with early stage ER-negative breast cancer. Breast Cancer Res Treat 131(3):859–869. doi:10.1007/s10549-011-1485-3PubMedCrossRefGoogle Scholar
- 56.Xu Y, Diao L, Chen Y, Liu Y, Wang C, Ouyang T, Li J, Wang T, Fan Z, Fan T, Lin B, Deng D, Narod SA, Xie Y (2013) Promoter methylation of BRCA1 in triple-negative breast cancer predicts sensitivity to adjuvant chemotherapy. Ann Oncol 24(6):1498–1505. doi:10.1093/annonc/mdt011PubMedCrossRefGoogle Scholar
- 57.Hsu NC, Huang YF, Yokoyama KK, Chu PY, Chen FM, Hou MF (2013) Methylation of BRCA1 promoter region is associated with unfavorable prognosis in women with early-stage breast cancer. PLoS One 8 (2):e56256. doi:10.1371/journal.pone.0056256PubMedPubMedCentralCrossRefGoogle Scholar
- 58.Noetzel E, Rose M, Sevinc E, Hilgers RD, Hartmann A, Naami A, Knuchel R, Dahl E (2010) Intermediate filament dynamics and breast cancer: aberrant promoter methylation of the synemin gene is associated with early tumor relapse. Oncogene 29(34):4814–4825. doi:10.1038/onc.2010.229PubMedCrossRefGoogle Scholar
- 59.Li SY, Li R, Chen YL, Xiong LK, Wang HL, Rong L, Luo RC (2014) Aberrant PTPRO methylation in tumor tissues as a potential biomarker that predicts clinical outcomes in breast cancer patients. BMC Genet 15:67. doi:10.1186/1471-2156-15-67PubMedPubMedCentralCrossRefGoogle Scholar
- 60.Cho YH, Shen J, Gammon MD, Zhang YJ, Wang Q, Gonzalez K, Xu X, Bradshaw PT, Teitelbaum SL, Garbowski G, Hibshoosh H, Neugut AI, Chen J, Santella RM (2012) Prognostic significance of gene-specific promoter hypermethylation in breast cancer patients. Breast Cancer Res Treat 131(1):197–205. doi:10.1007/s10549-011-1712-yPubMedPubMedCentralCrossRefGoogle Scholar
- 61.Nimmrich I, Sieuwerts AM, Meijer-van Gelder ME, Schwope I, Bolt-de Vries J, Harbeck N, Koenig T, Hartmann O, Kluth A, Dietrich D, Magdolen V, Portengen H, Look MP, Klijn JG, Lesche R, Schmitt M, Maier S, Foekens JA, Martens JW (2008) DNA hypermethylation of PITX2 is a marker of poor prognosis in untreated lymph node-negative hormone receptor-positive breast cancer patients. Breast Cancer Res Treat 111(3):429–437. doi:10.1007/s10549-007-9800-8PubMedCrossRefGoogle Scholar
- 62.Lo Nigro C, Monteverde M, Lee S, Lattanzio L, Vivenza D, Comino A, Syed N, McHugh A, Wang H, Proby C, Garrone O, Merlano M, Hatzimichael E, Briasoulis E, Gojis O, Palmieri C, Jordan L, Quinlan P, Thompson A, Crook T (2012) NT5E CpG island methylation is a favourable breast cancer biomarker. Br J Cancer 107(1):75–83. doi:10.1038/bjc.2012.212PubMedPubMedCentralCrossRefGoogle Scholar
- 63.Xu J, Shetty PB, Feng W, Chenault C, Bast RC Jr, Issa JP, Hilsenbeck SG, Yu Y (2012) Methylation of HIN-1, RASSF1A, RIL and CDH13 in breast cancer is associated with clinical characteristics, but only RASSF1A methylation is associated with outcome. BMC Cancer 12:243. doi:10.1186/1471-2407-12-243PubMedPubMedCentralCrossRefGoogle Scholar
- 64.Fujita N, Nakayama T, Yamamoto N, Kim SJ, Shimazu K, Shimomura A, Maruyama N, Morimoto K, Tamaki Y, Noguchi S (2012) Methylated DNA and total DNA in serum detected by one-step methylation-specific PCR is predictive of poor prognosis for breast cancer patients. Oncology 83(5):273–282. doi:10.1159/000342083PubMedCrossRefGoogle Scholar
- 65.Fleischer T, Frigessi A, Johnson KC, Edvardsen H, Touleimat N, Klajic J, Riis M, Haakensen VD, Warnberg F, Naume B, Helland A, Borresen-Dale AL, Tost J, Christensen BC, Kristensen VN (2014) Genome-wide DNA methylation profiles in progression toin situ and invasive carcinoma of the breast with impact on gene transcription and prognosis. Genome Biol 15(8):435. doi:10.1186/PREACCEPT-2333349012841587PubMedPubMedCentralGoogle Scholar
- 66.Muller HM, Widschwendter A, Fiegl H, Ivarsson L, Goebel G, Perkmann E, Marth C, Widschwendter M (2003) DNA methylation in serum of breast cancer patients: an independent prognostic marker. Cancer Res 63 (22):7641–7645PubMedGoogle Scholar
- 67.Chimonidou M, Tzitzira A, Strati A, Sotiropoulou G, Sfikas C, Malamos N, Georgoulias V, Lianidou E (2013) CST6 promoter methylation in circulating cell-free DNA of breast cancer patients. Clin Biochem 46(3):235–240. doi:10.1016/j.clinbiochem.2012.09.015PubMedCrossRefGoogle Scholar
- 68.Sharma G, Mirza S, Parshad R, Srivastava A, Gupta SD, Pandya P, Ralhan R (2011) Clinical significance of Maspin promoter methylation and loss of its protein expression in invasive ductal breast carcinoma: correlation with VEGF-A and MTA1 expression. Tumour Biol: J Int Soc Oncodev Biol Med 32(1):23–32. doi:10.1007/s13277-010-0087-8CrossRefGoogle Scholar
- 69.Fiegl H, Jones A, Hauser-Kronberger C, Hutarew G, Reitsamer R, Jones RL, Dowsett M, Mueller-Holzner E, Windbichler G, Daxenbichler G, Goebel G, Ensinger C, Jacobs I, Widschwendter M (2008) Methylated NEUROD1 promoter is a marker for chemosensitivity in breast cancer. Clin Cancer Res: Off J Am Assoc Cancer Res 14(11):3494–3502. doi:10.1158/1078-0432.CCR-07-4557CrossRefGoogle Scholar
- 70.Gobel G, Auer D, Gaugg I, Schneitter A, Lesche R, Muller-Holzner E, Marth C, Daxenbichler G (2011) Prognostic significance of methylated RASSF1A and PITX2 genes in blood- and bone marrow plasma of breast cancer patients. Breast Cancer Res Treat 130(1):109–117. doi:10.1007/s10549-010-1335-8PubMedCrossRefGoogle Scholar
- 71.Mirza S, Sharma G, Parshad R, Srivastava A, Gupta SD, Ralhan R (2010) Clinical significance of stratifin, ERalpha and PR promoter methylation in tumor and serum DNA in Indian breast cancer patients. Clin Biochem 43(4–5):380–386. doi:10.1016/j.clinbiochem.2009.11.016PubMedCrossRefGoogle Scholar
- 72.Mirza S, Sharma G, Parshad R, Srivastava A, Gupta SD, Ralhan R (2012) Clinical significance of promoter hypermethylation of ERbeta and RARbeta2 in tumor and serum DNA in Indian breast cancer patients. Ann Surg Oncol 19(9):3107–3115. doi:10.1245/s10434-012-2323-5PubMedCrossRefGoogle Scholar
- 73.Jing F, Jun L, Yong Z, Wang Y, Fei X, Zhang J, Hu L (2008) Multigene methylation in serum of sporadic Chinese female breast cancer patients as a prognostic biomarker. Oncology 75(1–2):60–66. doi:10.1159/000155145PubMedCrossRefGoogle Scholar
- 74.Bjornsson HT, Sigurdsson MI, Fallin MD, Irizarry RA, Aspelund T, Cui H, Yu W, Rongione MA, Ekström TJ, Harris TB, Launer LJ, Eiriksdottir G, Leppert MF, Sapienza C, Gudnason V, Feinberg AP (2008) Intra-individual change over time in DNA methylation with familial clustering. J Am Med Assoc 299(24):2877–2883. doi:10.1001/jama.299.24.2877CrossRefGoogle Scholar
- 75.Bollati V, Schwartz J, Wright R, Litonjua A, Tarantini L, Suh H, Sparrow D, Vokonas P, Baccarelli A (2009) Decline in genomic DNA methylation through aging in a cohort of elderly subjects. Mech Ageing Dev 130(4):234–239PubMedPubMedCentralCrossRefGoogle Scholar
- 76.Wu H-C, Wang Q, Delgado-Cruzata L, Santella RM, Terry MB (2012) Genomic methylation changes over time in peripheral blood mononuclear cell DNA: differences by assay type and baseline values. Cancer Epidemiol Biomark Prev 21(8):1314–1318. doi:10.1158/1055-9965.epi-12-0300CrossRefGoogle Scholar
- 77.Liggett TE, Melnikov AA, Marks JR, Levenson VV (2011) Methylation patterns in cell-free plasma DNA reflect removal of the primary tumor and drug treatment of breast cancer patients. Int J Cancer 128(2):492–499. doi:10.1002/ijc.25363PubMedPubMedCentralCrossRefGoogle Scholar
- 78.Mandelblatt JS, Cronin KA, Bailey S, Berry DA, de Koning HJ, Draisma G, Huang H, Lee SJ, Munsell M, Plevritis SK, Ravdin P, Schechter CB, Sigal B, Stoto MA, Stout NK, van Ravesteyn NT, Venier J, Zelen M, Feuer EJ (2009) Effects of mammography screening under different screening schedules: model estimates of potential benefits and harms. Ann Intern Med 151(10):738–747. doi:10.7326/0003-4819-151-10-200911170-00010PubMedPubMedCentralCrossRefGoogle Scholar
- 79.Webb ML, Cady B, Michaelson JS, Bush DM, Calvillo KZ, Kopans DB, Smith BL (2013) A failure analysis of invasive breast cancer. Cancer. doi:10.1002/cncr.28199. doi:10.1002/cncr.28199Google Scholar
- 80.Elmore JG, Barton MB, Moceri VM, Polk S, Arena PJ, Fletcher SW (1998) Ten-year risk of false positive screening mammograms and clinical breast examinations. N Engl J Med 338(16):1089–1096. doi:10.1056/NEJM199804163381601PubMedCrossRefGoogle Scholar
- 81.Alagaratnam TT, Wong J (1985) Limitations of mammography in Chinese females. Clin Radiol 36(2):175–177PubMedCrossRefGoogle Scholar
- 82.Moss S (2004) Should women under 50 be screened for breast cancer? Br J Cancer 91(3):413–417PubMedPubMedCentralCrossRefGoogle Scholar
- 83.Qaseem A, Snow V, Sherif K, Aronson M, Weiss KB, Owens DK (2007) Screening mammography for women 40 to 49 years of age: a clinical practice guideline from the American College of physicians. Ann Intern Med 146(7):511–515. doi:10.7326/0003-4819-146-7-200704030-00007PubMedCrossRefGoogle Scholar
- 84.Wald NJ, Hackshaw AK, Frost CD (1999) When can a risk factor be used as a worthwhile screening test? BMJ 319(7224):1562–1565PubMedPubMedCentralCrossRefGoogle Scholar
- 85.Andriole GL, Crawford ED, Grubb RL 3rd, Buys SS, Chia D, Church TR, Fouad MN, Gelmann EP, Kvale PA, Reding DJ, Weissfeld JL, Yokochi LA, O’Brien B, Clapp JD, Rathmell JM, Riley TL, Hayes RB, Kramer BS, Izmirlian G, Miller AB, Pinsky PF, Prorok PC, Gohagan JK, Berg CD, Team PP (2009) Mortality results from a randomized prostate-cancer screening trial. N Engl J Med 360(13):1310–1319. doi:10.1056/NEJMoa0810696PubMedPubMedCentralCrossRefGoogle Scholar
- 86.Buys SS, Partridge E, Black A, Johnson CC, Lamerato L, Isaacs C, Reding DJ, Greenlee RT, Yokochi LA, Kessel B, Crawford ED, Church TR, Andriole GL, Weissfeld JL, Fouad MN, Chia D, O’Brien B, Ragard LR, Clapp JD, Rathmell JM, Riley TL, Hartge P, Pinsky PF, Zhu CS, Izmirlian G, Kramer BS, Miller AB, Xu JL, Prorok PC, Gohagan JK, Berg CD, Team PP (2011) Effect of screening on ovarian cancer mortality: the Prostate, Lung, Colorectal and Ovarian (PLCO) cancer screening randomized controlled trial. J Am Med Assoc 305(22):2295–2303. doi:10.1001/jama.2011.766CrossRefGoogle Scholar
- 87.Yamada T, Nakamori S, Ohzato H, Oshima S, Aoki T, Higaki N, Sugimoto K, Akagi K, Fujiwara Y, Nishisho I, Sakon M, Gotoh M, Monden M (1998) Detection of K-ras gene mutations in plasma DNA of patients with pancreatic adenocarcinoma: correlation with clinicopathological features. Clin Cancer Res 4(6):1527–1532PubMedGoogle Scholar
- 88.Jackson PE, Qian G-S, Friesen MD, Zhu Y-R, Lu P, Wang J-B, Wu Y, Kensler TW, Vogelstein B, Groopman JD (2001) Specific p53 mutations detected in plasma and tumors of hepatocellular carcinoma patients by electrospray ionization mass spectrometry. Cancer Res 61(1):33–35PubMedGoogle Scholar
- 89.Gormally E, Caboux E, Vineis P, Hainaut P (2007) Circulating free DNA in plasma or serum as biomarker of carcinogenesis: practical aspects and biological significance. MutatRes 635:105–117Google Scholar
- 90.Haber DA, Velculescu VE (2014) Blood-based analyses of cancer: circulating tumor cells and circulating tumor DNA. Cancer Discov. doi:10.1158/2159-8290.cd-13-1014Google Scholar
- 91.Breitbach S, Tug S, Simon P (2012) Circulating cell-free DNA: an up-coming molecular marker in exercise physiology. Sports Med 42(7):565–586. doi:10.2165/11631380-000000000-00000PubMedCrossRefGoogle Scholar
- 92.Wang W, Srivastava S (2010) Strategic approach to validating methylated genes as biomarkers for breast cancer. Cancer Prev Res 3(1):16–24. doi:10.1158/1940-6207.capr-09-0098CrossRefGoogle Scholar
- 93.Van De Voorde L, Speeckaert R, Van Gestel D, Bracke M, De Neve W, Delanghe J, Speeckaert M (2012) DNA methylation-based biomarkers in serum of patients with breast cancer. Mutat Res (Reviews in Mutation Research) 751(2):304–325. doi:http://dx.doi.org/10.1016/j.mrrev.2012.06.001 CrossRefGoogle Scholar
- 94.Suijkerbuijk KPM, van Diest PJ, van der Wall E (2011) Improving early breast cancer detection: focus on methylation. Ann Oncol 22(1):24–29. doi:10.1093/annonc/mdq305PubMedCrossRefGoogle Scholar
- 95.Yazici H, Terry MB, Cho YH, Senie RT, Liao Y, Andrulis I, Santella RM (2009) Aberrant methylation of RASSF1A in plasma DNA before breast cancer diagnosis in the breast cancer family registry. Cancer Epidemiol Biomark Prev 18(10):2723–2725. doi:1055-9965.EPI-08-1237 [pii] 10.1158/1055-9965.EPI-08-1237 [doi]CrossRefGoogle Scholar
- 96.Brooks JD, Cairns P, Shore RE, Klein CB, Wirgin I, Afanasyeva Y, Zeleniuch-Jacquotte A (2010) DNA methylation in pre-diagnostic serum samples of breast cancer cases: results of a nested case–control study. Cancer Epidemiol 34(6):717–723. doi:http://dx.doi.org/10.1016/j.canep.2010.05.006 PubMedPubMedCentralCrossRefGoogle Scholar
- 97.Guerrero-Preston R, Guerrero-Preston R, Hadar T, Hadar T, Ostrow K, Ostrow K, Soudry E, Soudry E, Echenique M, Echenique M, Ili-Gangas C, Ili-Gangas C, Pérez G, Pérez G, Perez J, Perez J, Brebi-Mieville P, Brebi-Mieville P, Deschamps J, Deschamps J, Morales L, Morales L, Bayona M, Bayona M, Sidransky D, Sidransky D, Matta J, Matta J (2014) Differential promoter methylation of kinesin family member 1a in plasma is associated with breast cancer and DNA repair capacity. Oncol Rep 32(2):505–512PubMedPubMedCentralGoogle Scholar
- 98.Papadopoulou E, Davilas E, Sotiriou V, Georgakopoulos E, Georgakopoulou S, Koliopanos A, Aggelakis F, Dardoufas K, Agnanti NJ, Karydas I, Nasioulas G (2006) Cell-free DNA and RNA in plasma as a new molecular marker for prostate and breast cancer. Ann N Y Acad Sci 1075:235–243. doi:10.1196/annals.1368.032PubMedCrossRefGoogle Scholar
- 99.Van der Auwera I, Elst HJ, Van Laere SJ, Maes H, Huget P, van Dam P, Van Marck EA, Vermeulen PB, Dirix LY (2009) The presence of circulating total DNA and methylated genes is associated with circulating tumour cells in blood from breast cancer patients. Br J Cancer 100(8):1277–1286. doi:10.1038/sj.bjc.6605013PubMedPubMedCentralCrossRefGoogle Scholar
- 100.Fan HC, Blumenfeld YJ, Chitkara U, Hudgins L, Quake SR (2010) Analysis of the size distributions of fetal and maternal cell-free DNA by paired-end sequencing. Clin Chem 56(8):1279–1286. doi:10.1373/clinchem.2010.144188PubMedCrossRefGoogle Scholar
- 101.Shen J, Wang S, Zhang Y-J, Kappil M, Wu H-C, Kibriya MG, Wang Q, Jasmine F, Ahsan H, Lee P-H, Yu M-W, Chen C-J, Santella RM (2012) Genome-wide DNA methylation profiles in hepatocellular carcinoma. Hepatology 55(6):1799–1808. doi:10.1002/hep.25569PubMedPubMedCentralCrossRefGoogle Scholar
- 102.Lo YMD (2000) Fetal DNA in maternal plasma: biology and diagnostic applications. Clin Chem 46(12):1903–1906PubMedGoogle Scholar
- 103.PDQ Screening and Prevention Editorial Board (2015) Breast cancer screening (PDQ): Health professional version. PDQ Cancer Information Summaries. National Cancer Institute (US), Bethesda (MD), 2002Google Scholar
- 104.National Comprehensive Cancer Network (NCCN) (2013) NCCN clinical practice guidelines in oncology: breast cancer screening and diagnosis, Version 1 2013Google Scholar
- 105.Duffy S, Mackay J, Thomas S, Anderson E, Chen T, Ellis I, Evans G, Fielder H, Fox R, Gui G, Macmillan D, Moss S, Rogers C, Sibbering M, Wallis M, Warren R, Watson E, Whynes D, Allgood P, Caunt J (2013) Evaluation of mammographic surveillance services in women aged 40–49 years with a moderate family history of breast cancer: a single-arm cohort study. Health Technol Assess 17:vii–xivPubMedCrossRefGoogle Scholar
- 106.Suijkerbuijk KP, van der Wall E, Vooijs M, van Diest PJ (2008) Molecular analysis of nipple fluid for breast cancer screening. Pathobiology: J Immunopathol Mol Cell Biol 75(2):149–152. doi:10.1159/000123853PubMedCrossRefGoogle Scholar
- 107.Dua RS, Isacke CM, Gui GPH (2006) The intraductal approach to breast cancer biomarker discovery. J Oncol 24(7):1209–1216. doi:10.1200/jco.2005.04.1830CrossRefGoogle Scholar
- 108.Evron E, Dooley WC, Umbricht CB, Rosenthal D, Sacchi N, Gabrielson E, Soito AB, Hung DT, Ljung B-M, Davidson NE, Sukumar S (2001) Detection of breast cancer cells in ductal lavage fluid by methylation-specific PCR. Lancet 357(9265):1335–1336. doi:http://dx.doi.org/10.1016/S0140-6736(00)04501-3PubMedCrossRefGoogle Scholar
- 109.Twelves D, Nerurkar A, Osin P, Dexter T, Ward A, Gui GH, Isacke C (2013) DNA promoter hypermethylation profiles in breast duct fluid. Breast Cancer Res Treat 139(2):341–350. doi:10.1007/s10549-013-2544-8PubMedCrossRefGoogle Scholar
- 110.Fackler MJ, McVeigh M, Mehrotra J, Blum MA, Lange J, Lapides A, Garrett E, Argani P, Sukumar S (2004) Quantitative multiplex methylation-specific PCR assay for the detection of promoter hypermethylation in multiple genes in breast cancer. Cancer Res 64(13):4442–4452. doi:10.1158/0008-5472.CAN-03-3341PubMedCrossRefGoogle Scholar
- 111.Fackler MJ, Malone K, Zhang Z, Schilling E, Garrett-Mayer E, Swift-Scanlan T, Lange J, Nayar R, Davidson NE, Khan SA, Sukumar S (2006) Quantitative multiplex methylation-specific PCR analysis doubles detection of tumor cells in breast ductal fluid. Clin Cancer Res: Off J Am Assoc Cancer Res 12(11 Pt 1):3306–3310. doi:10.1158/1078-0432.CCR-05-2733CrossRefGoogle Scholar
- 112.Antill YC, Mitchell G, Johnson SA, Devereux L, Milner A, Di Iulio J, Lindeman GJ, Kirk J, Phillips KA, Campbell IG (2010) Gene methylation in breast ductal fluid from BRCA1 and BRCA2 mutation carriers. Cancer Epidemiol Biomark Prev 19(1):265–274. doi:10.1158/1055-9965.epi-09-0359CrossRefGoogle Scholar
- 113.Locke I, Kote-Jarai Z, Fackler MJ, Bancroft E, Osin P, Nerurkar A, Izatt L, Pichert G, Gui GP, Eeles RA (2007) Gene promoter hypermethylation in ductal lavage fluid from healthy BRCA gene mutation carriers and mutation-negative controls. Breast Cancer Res 9(1):R20. doi:10.1186/bcr1657PubMedPubMedCentralCrossRefGoogle Scholar
- 114.Schuebel KE, Chen W, Cope L, Glöckner SC, Suzuki H, Yi J-M, Chan TA, Neste LV, Criekinge WV, Bosch Svd, van Engeland M, Ting AH, Jair K, Yu W, Toyota M, Imai K, Ahuja N, Herman JG, Baylin SB (2007) Comparing the DNA Hypermethylome with gene mutations in human colorectal cancer. PLoS Genet 3(9):e157. doi:10.1371/journal.pgen.0030157PubMedCentralCrossRefGoogle Scholar
- 115.Ushijima T, Asada K (2010) Aberrant DNA methylation in contrast with mutations. Cancer Sci 101(2):300–305. doi:10.1111/j.1349-7006.2009.01434.xPubMedCrossRefGoogle Scholar
- 116.Hoque MO, Prencipe M, Poeta ML, Barbano R, Valori VM, Copetti M, Gallo AP, Brait M, Maiello E, Apicella A, Rossiello R, Zito F, Stefania T, Paradiso A, Carella M, Dallapiccola B, Murgo R, Carosi I, Bisceglia M, Fazio VM, Sidransky D, Parrella P (2009) Changes in CpG islands promoter methylation patterns during ductal breast carcinoma progression. Cancer Epidemiol Biomark Prev 18(10):2694–2700. doi:10.1158/1055-9965.epi-08-0821CrossRefGoogle Scholar
- 117.Lewis CM, Cler LR, Bu D-W, Zöchbauer-Müller S, Milchgrub S, Naftalis EZ, Leitch AM, Minna JD, Euhus DM (2005) Promoter hypermethylation in benign breast epithelium in relation to predicted breast cancer risk. Clin Cancer Res 11(1):166–172PubMedGoogle Scholar
- 118.Pasquali L, Bedeir A, Ringquist S, Styche A, Bhargava R, Trucco G (2007) Quantification of CpG island methylation in progressive breast lesions from normal to invasive carcinoma. Cancer Lett 257(1):136–144. doi:http://dx.doi.org/10.1016/j.canlet.2007.07.010 PubMedCrossRefGoogle Scholar
- 119.Zhu J, Yao X (2009) Use of DNA methylation for cancer detection: promises and challenges. Int J Biochem Cell Biol 41(1):147–154. doi:http://dx.doi.org/10.1016/j.biocel.2008.09.003 PubMedCrossRefGoogle Scholar
- 120.Sidransky D (1997) Nucleic acid-based methods for the detection of cancer. Science 278(5340):1054–1058. doi:10.1126/science.278.5340.1054PubMedCrossRefGoogle Scholar
- 121.Herman JG, Baylin SB (2003) Gene silencing in cancer in association with promoter hypermethylation. N Engl J Med 349(21):2042–2054. doi:10.1056/NEJMra023075PubMedCrossRefGoogle Scholar
- 122.Terry MB, Delgado-Cruzata L, Vin-Raviv N, Wu HC, Santella RM (2011) DNA methylation in white blood cells: association with risk factors in epidemiologic studies. Epigenetics: Off J DNA Methylation Soc 6(7):828–837. doi:16500 [pii]CrossRefGoogle Scholar
- 123.Brennan K, Flanagan JM (2012) Is there a link between genome-wide hypomethylation in blood and cancer risk? Cancer Prev Res 5(12):1345–1357. doi:10.1158/1940-6207.capr-12-0316CrossRefGoogle Scholar
- 124.Choi J-Y, James SR, Link PA, McCann SE, Hong C-C, Davis W, Nesline MK, Ambrosone CB, Karpf AR (2009) Association between global DNA hypomethylation in leukocytes and risk of breast cancer. Carcinogenesis 30:1889–1897PubMedPubMedCentralCrossRefGoogle Scholar
- 125.Xu X, Gammon MD, Hernandez-Vargas H, Herceg Z, Wetmur JG, Teitelbaum SL, Bradshaw PT, Neugut AI, Santella RM, Chen J (2012) DNA methylation in peripheral blood measured by LUMA is associated with breast cancer in a population-based study. FASEB J 26(6):2657–2666. doi:10.1096/fj.11-197251PubMedPubMedCentralCrossRefGoogle Scholar
- 126.Cho Y, Yazici H, Wu H, Terry M, Gonzalez K, Qu M, Dalay N, Santella R (2010) Aberrant promoter hypermethylation and genomic hypomethylation in tumor, adjacent normal tissues and blood from breast cancer patients. Anticancer Res 3(7):2489–2496Google Scholar
- 127.Delgado-Cruzata L, Wu H-C, Perrin M, Liao Y, Kappil MA, Ferris JS, Flom JD, Yazici H, Santella RM, Terry MB (2012) Global DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry. Epigenetics: Off J DNA Methylation Soc 7(8):868–874CrossRefGoogle Scholar
- 128.Kuchiba A, Iwasaki M, Ono H, Kasuga Y, Yokoyama S, Onuma H, Nishimura H, Kusama R, Tsugane S, Yoshida T (2014) Global methylation levels in peripheral blood leukocyte DNA by LUMA and breast cancer: a case-control study in Japanese women. Br J Cancer 110(11):2765–2771. doi:10.1038/bjc.2014.223PubMedPubMedCentralCrossRefGoogle Scholar
- 129.Wu H-C, Delgado-Cruzata L, Flom JD, Perrin M, Liao Y, Ferris JS, Santella RM, Terry MB (2012) Repetitive element DNA methylation levels in white blood cell DNA from sisters discordant for breast cancer from the New York site of the Breast Cancer Family Registry. Carcinogenesis 33(10):1946–1952. doi:10.1093/carcin/bgs201PubMedPubMedCentralCrossRefGoogle Scholar
- 130.Brennan K, Garcia-Closas M, Orr N, Fletcher O, Jones M, Ashworth A, Swerdlow A, Thorne H, Riboli E, Vineis P, Dorronsoro M, Clavel-Chapelon F, Panico S, Onland-Moret NC, Trichopoulos D, Kaaks R, Khaw K-T, Brown R, Flanagan JM (2012) Intragenic ATM methylation in peripheral blood DNA as a biomarker of breast cancer risk. Cancer Res 72(9):2304–2313. doi:10.1158/0008-5472.can-11-3157PubMedCrossRefGoogle Scholar
- 131.DeRoo LA, Bolick SCE, Xu Z, Umbach DM, Shore D, Weinberg CR, Sandler DP, Taylor JA (2014) Global DNA methylation and one-carbon metabolism gene polymorphisms and the risk of breast cancer in the sister study. Carcinogenesis 35(2):333–338. doi:10.1093/carcin/bgt342PubMedPubMedCentralCrossRefGoogle Scholar
- 132.Widschwendter M, Apostolidou S, Raum E, Rothenbacher D, Fiegl H, Menon U, Stegmaier C, Jacobs I, Brenner H (2008) Epigenotyping in peripheral blood cell DNA and breast cancer risk: a proof of principle study. PLoS One 3(7):e2656PubMedPubMedCentralCrossRefGoogle Scholar
- 133.Iwamoto T, Yamamoto N, Taguchi T, Tamaki Y, Noguchi S (2010) BRCA1 promoter methylation in peripheral blood cells is associated with increased risk of breast cancer with BRCA1 promoter methylation. Breast Cancer Res Treat 1–9. doi:10.1007/s10549-010-1188-1Google Scholar
- 134.Bosviel R, Garcia S, Lavediaux G, Michard E, Dravers M, Kwiatkowski F, Bignon Y-J, Bernard-Gallon DJ (2012) BRCA1 promoter methylation in peripheral blood DNA was identified in sporadic breast cancer and controls. Cancer Epidemiol 36(3):e177–e182. doi:http://dx.doi.org/10.1016/j.canep.2012.02.001 PubMedCrossRefGoogle Scholar
- 135.Flanagan JM, Munoz-Alegre M, Henderson S, Tang T, Sun P, Johnson N, Fletcher O, dos Santos Silva I, Peto J, Boshoff C, Narod S, Petronis A (2009) Gene-body hypermethylation of ATM in peripheral blood DNA of bilateral breast cancer patients. Hum Mol Genet 18(7):1332–1342. doi:10.1093/hmg/ddp033PubMedPubMedCentralCrossRefGoogle Scholar
- 136.Xu Z, Bolick SC, DeRoo LA, Weinberg CR, Sandler DP, Taylor JA (2013) Epigenome-wide association study of breast cancer using prospectively collected sister study samples. J Natl Cancer Inst 105(10):694–700. doi:10.1093/jnci/djt045PubMedPubMedCentralCrossRefGoogle Scholar
- 137.Pepe MS, Etzioni R, Feng Z, Potter JD, Thompson ML, Thornquist M, Winget M, Yasui Y (2001) Phases of biomarker development for early detection of cancer. J Natl Cancer Inst 93(14):1054–1061PubMedCrossRefGoogle Scholar
- 138.Dedeurwaerder S, Defrance M, Bizet M, Calonne E, Bontempi G, Fuks F (2013) A comprehensive overview of infinium HumanMethylation450 data processing. Brief Bioinform. doi:10.1093/bib/bbt054Google Scholar
- 139.Tavares-Murta BM, Mendonça MAO, Duarte NL, da Silva JA, Mutão TS, Garcia CB, Murta EFC (2010) Systemic leukocyte alterations are associated with invasive uterine cervical cancer. Int J Gynecol Cancer 20(7):1154–1159. 1110.1111/IGC.1150b1013e3181ef1158debPubMedCrossRefGoogle Scholar
- 140.Wu HC, Delgado-Cruzata L, Flom JD, Kappil M, Ferris JS, Liao Y, Santella RM, Terry MB (2011) Global methylation profiles in DNA from different blood cell types. Epigenetics: Off J DNA Methylation Soc 6(1):76–85. doi:10.4161/epi.6.1.13391CrossRefGoogle Scholar
- 141.Houseman E, Accomando W, Koestler D, Christensen B, Marsit C, Nelson H, Wiencke J, Kelsey K (2012) DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinform 13(1):86CrossRefGoogle Scholar
- 142.Koestler DC, Christensen BC, Karagas MR, Marsit CJ, Langevin SM, Kelsey KT, Wiencke JK, Houseman EA (2013) Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis. Epigenetics: Off J DNA Methylation Soc 8(8):816–826CrossRefGoogle Scholar
- 143.Bakulski KM, Fallin MD (2014) Epigenetic epidemiology: promises for public health research. Environ Mol Mutagenesis 55(3):171–183. doi:10.1002/em.21850CrossRefGoogle Scholar
- 144.Barault L, Ellsworth RE, Harris HR, Valente AL, Shriver CD, Michels KB (2013) Leukocyte DNA as surrogate for the evaluation of imprinted loci methylation in mammary tissue DNA. PLoS One 8(2):e55896. doi:10.1371/journal.pone.0055896PubMedPubMedCentralCrossRefGoogle Scholar
- 145.Dumitrescu RG, Marian C, Krishnan SS, Spear SL, Kallakury BV, Perry DJ, Convit JR, Seillier-Moiseiwitsch F, Yang Y, Freudenheim JL, Shields PG (2010) Familial and racial determinants of tumour suppressor genes promoter hypermethylation in breast tissues from healthy women. J Cell Mol Med 14(6B):1468–1475. doi:10.1111/j.1582-4934.2009.00924.xPubMedPubMedCentralCrossRefGoogle Scholar
- 146.Heidary M, Auer M, Ulz P, Heitzer E, Petru E, Gasch C, Riethdorf S, Mauermann O, Lafer I, Pristauz G, Lax S, Pantel K, Geigl J, Speicher M (2014) The dynamic range of circulating tumor DNA in metastatic breast cancer. Breast Cancer Res 16(4):421PubMedPubMedCentralCrossRefGoogle Scholar
- 147.Martin GM (2005) Epigenetic drift in aging identical twins. Proc Natl Acad Sci U S A 102(30):10413–10414. doi:10.1073/pnas.0504743102PubMedPubMedCentralCrossRefGoogle Scholar
- 148.van der Vaart M, Pretorius PJ (2010) Is the role of circulating DNA as a biomarker of cancer being prematurely overrated? Clin Biochem 43(1–2):26–36. doi:http://dx.doi.org/10.1016/j.clinbiochem.2009.08.027 PubMedCrossRefGoogle Scholar
- 149.Sozzi G, Roz L, Conte D, Mariani L, Andriani F, Verderio P, Pastorino U (2005) Effects of prolonged storage of whole plasma or isolated plasma DNA on the results of circulating DNA quantification assays. J Natl Cancer Inst 97(24):1848–1850. doi:10.1093/jnci/dji432PubMedCrossRefGoogle Scholar
- 150.Fisher B, Costantino JP, Wickerham DL, Redmond CK, Kavanah M, Cronin WM, Vogel V, Robidoux A, Dimitrov N, Atkins J, Daly M, Wieand S, Tan-Chiu E, Ford L, Wolmark N, Breast oNSA, Investigators BP (1998) Tamoxifen for prevention of breast cancer: report of the national surgical adjuvant breast and bowel project P-1 study. J Natl Cancer Inst 90(18):1371–1388. doi:10.1093/jnci/90.18.1371PubMedCrossRefGoogle Scholar
- 151.Vogel VG, Costantino JP, Wickerham D et al (2006) Effects of tamoxifen vs raloxifene on the risk of developing invasive breast cancer and other disease outcomes: the NSABP study of tamoxifen and raloxifene (star) p-2 trial. J Am Med Assoc 295(23):2727–2741. doi:10.1001/jama.295.23.joc60074CrossRefGoogle Scholar
- 152.Smith RA, Cokkinides V, Brooks D, Saslow D, Shah M, Brawley OW (2011) Cancer screening in the United States, 2011. CA: Cancer J Clin 61(1):8–30. doi:10.3322/caac.20096Google Scholar
- 153.Gail MH, Brinton LA, Byar DP, Corle DK, Green SB, Schairer C, Mulvihill JJ (1989) Projecting individualized probabilities of developing breast cancer for white females who are being examined annually. J Natl Cancer Inst 81(24):1879–1886. doi:10.1093/jnci/81.24.1879PubMedCrossRefGoogle Scholar
- 154.Antoniou AC, Pharoah PPD, Smith P, Easton DF (2004) The BOADICEA model of genetic susceptibility to breast and ovarian cancer. Br J Cancer 91(8):1580–1590PubMedPubMedCentralGoogle Scholar
- 155.Anothaisintawee T, Teerawattananon Y, Wiratkapun C, Kasamesup V, Thakkinstian A (2012) Risk prediction models of breast cancer: a systematic review of model performances. Breast Cancer Res Treat 133(1):1–10. doi:10.1007/s10549-011-1853-zPubMedCrossRefGoogle Scholar