Global Spatial Analyses of Phylogenetic Conservation Priorities for Aquatic Mammals
Several studies have shown how current climate change and human threats to aquatic environments are significantly impacting aquatic mammals worldwide. In response to these threats it is important to prioritize conservation efforts. A recent approach to evaluate conservation priorities is to combine information on species status from the International Union for Conservation of Nature (IUCN) Red List with information on the evolutionary history of the species from phylogenetic trees. This new approach provides a measure of biodiversity that complements estimates of species richness, adding evolutionary distinctiveness of species. Using near-complete species level phylogenies for the mammal groups with aquatic species (Carnivora, Cetacea, Sirenia) we calculated two measures (EDGE and HEDGE) of conservation priorities for 127 aquatic mammals under two scenarios of projected extinctions: a “pessimistic” approach, which represents a ‘worst case scenario’ for each species; and the “IUCN 50” a projected extinction risk over the next 50 years (Table 1 Then we analyzed the information to identify conservation priority areas (CPA) for aquatic mammals. We identified 22 CPAs distributed primarily along coastal waters in both northern and southern hemispheres. While thousands of marine protected areas (MPA) have been established in recent years, only 11.5 % of CPAs overlap with existing MPAs. Nevertheless, all phylogenetic CPAs identified in this study have also been proposed to be important by other independent studies using different prioritization criteria, highlighting the importance of focusing conservation efforts in these areas.
KeywordsIUCN Cetaceans Pinnipeds Manatees EDGE HEDGE
Current climate change and human threats to aquatic environments are significantly impacting aquatic mammals worldwide (Schipper et al. 2008; Davidson et al. 2011; Harnik et al. 2012; Harkonen et al. 2012). A recent study showed that 74 % of aquatic mammals experience high levels of human impact within their geographic range, with pollution and fisheries being the two most important threats (Davidson et al. 2011). Human overexploitation is proposed as the major cause of extinction of the Steller’s sea cow (Hydrodamalis gigas), the tropical monk seal (Monachus tropicalis) (Hofman 1995) and more recently the Yangtze river dolphin or Baiji (Lipotes vexillifer) (Turvey et al. 2007). Also brought to the brink of extinction have been three additional aquatic mammals: the vaquita (Phocoena sinus) and the Hawaiian and Mediterranean monk seals (Monachus schauinslandi and M. monachus) whose populations have been reduced to fewer than 250 individuals (IUCN2013.2). Some 28 % of aquatic mammals are threatened or near threatened under the International Union for Conservation of Nature (IUCN) risk classification and an additional 39 % are data deficient leaving only 33 % of aquatic mammal species at low risk. Furthermore, recent studies have suggested that even some of these species at relatively low risk should receive conservation attention due to their high evolutionary distinctiveness (May-Collado and Agnarsson 2011) and possible sudden changes in their risk of extinction due to rapidly changing environment (Davidson et al. 2011). Examples of such evolutionarily unique species are the data deficient Amazon River dolphin (Inia geoffrensis) and the walrus (Odobenus rosmarus). Both species are the only extant representatives of old lineages and live in habitats threatened by human activities and climate change, respectively. Additionally, based on the IUCN population trend information we estimate that most aquatic mammals are either decreasing (19.3 %) or unknown (64.3 %). In the light of these threats it is important to prioritize conservation efforts. In 2011, the Convention on Biological Diversity put in place a plan to protect 10 % of the world’s marine and coastal ecological regions by 2020. Thus identifying geographic areas that could maximize these conservation goals is an urgent task (Davidson et al. 2011).
The International Union Conservation of Nature (IUCN) is the most influential conservation network in the world. Through its ‘Red List’ the IUCN has established conservation priorities prominently based on the imperilment levels of individual species. These categorizations are used by a number of organizations and government agencies to prioritize funding and conservation efforts. IUCN levels of imperilment result from the combination of several criteria including population size, evidence of population decline or recovery, distribution patterns and factors threatening species (http://www.iucn.org).
However, there are other criteria to establish conservation priorities including the use of ‘umbrella species’ also known as keystone or flagship species (Zacharias and Roff 2001), ‘sentinel species’ (Moore 2008), ‘latent extinction risk’ (Cardillo et al. 2006), regional and local habitat models (e.g., Praca et al. 2009; Azzellino et al. 2012), and identification of hot-spots of species richness (Davidson et al. 2011; Kaschner et al. 2011; Pompa et al. 2011). Recent approaches to identify conservation priorities combine information on species status from the IUCN with information on the evolutionary history of the species from phylogenetic trees (Faith 1992, 2002, 2008; Faith et al. 2004; Redding and Mooers 2006; Schipper et al. 2008; Isaac et al. 2007; Mooers et al. 2008; Kuntner et al. 2009; Agnarsson et al. 2010; May-Collado and Agnarsson 2011). This new approach to conservation provides a measure of biodiversity that complements estimates of species richness, that is, of evolutionary distinctiveness of species. The fundamental argument is that the loss of evolutionarily unique species lacking close relatives represents a greater loss of biodiversity than the loss of species whose evolutionary history is, to a great extent, preserved in other closely related species (May-Collado and Agnarsson 2011).
Considering both evolutionary histories of lineages and species’ threats can help the goal of maximizing biodiversity conservation. This approach of identifying areas protecting both threatened species and containing high phylogenetic diversity provides another tool for decision-making. Here we examine global patterns of aquatic mammal phylogenetic conservation priorities using four recently proposed metrics for 127 aquatic mammals. We identify ConservationPriorityAreas (CPAs), estimate the degree to which such areas are contained within current Marine Protected Areas (MPA), and suggest areas where focusing future conservation effort might be particularly valuable.
Material and Methods
Extinction probabilities for IUCN levels of imperilment transformed into extinction probabilities using “pessimistic” and IUCN 50 transformations, as proposed by Mooers et al. 2008
IUCN level of imperilment
Using these transformation methods we calculated conservation priority measures using the TUATARA module version 1.01 (Maddison and Mooers 2007) in the evolutionary analysis package MESQUITE version 2.75 (Maddison and Maddison 2011). We used the conservation priority methods EDGE (Evolutionary Distinct, Globally Endangered) (http://www.edgeofexistence.org), which measures evolutionary distinctiveness (ED) weighted by current IUCN levels of extinction risk. EDGE scores are equivalent to a logarithmic transformation of the product of a species’ evolutionary distinctiveness and the probability it will go extinct (see Isaac et al. 2007). We also use the conservation priority method HEDGE (Heightened EDGE), which like EDGE measure evolutionary distinctiveness by IUCN levels of extinction but additionally considers how future extinction of species will affect the evolutionary distinctiveness of remaining species. In sum, HEDGE estimates the expected terminal branch length of the focal species in light of future extinction risk (Steel et al. 2007). Both conservation methods generate fixed probabilities of extinction as described in Table 1. For more information on how IUCN levels of imperilments are transformed into probabilities of extinction see Moores et al. (2008). Because there are not estimated probabilities of extinction available for data deficient species we arbitrarily assigned an extinction risk score in between the two lowest IUCN extinction categories: least concern and near threatened (Table 1). All four metrics were calculated using both ‘raw’ branch lengths (estimated by MrBayes) as they contain information on the unique evolutionary information of terminal taxa and ultrametrized trees. Furthermore, with the purpose of comparing this approach to identify conservation priority areas with other commonly used conservation prioritization criteria we calculated evolutionary distinctiveness (ED) (Isaac et al. 2007) also implemented in the TUATARA module and gathered information on species richness.
To identify conservation priority areas (CPAs) we used distribution range maps from the IUCN spatial database (2013) as a baseline to produce species richness, ED, EDGE and HEDGE maps, under both IUCN extinction probabilities transformation methods, pessimistic and IUCN50. The IUCN spatial database depict species’ range distribution as polygons based on the extent of occurrence, which is defined as the area contained within a minimum convex hull around species’ observations or records. This convex hull or polygon is further improved by including areas known to be suitable or by removing unsuitable or unoccupied areas based on expert knowledge.
For each species the distribution range was converted to a grid system with cells of 5′ × 5′ (approximately 10 × 10 km at the Equator line). This spatial resolution was selected for its practical compromise between intensive computing and a reasonable representation of geographic patterns. Traditionally, a one-degree cell (100 × 100 km) has been used in macroecological analyses, but there is no ecological reason behind the resolution. More importantly, it has been shown that higher spatial resolutions distort the geographical patterns of species richness (Rahbek 2005; Graham and Hijmans 2006). In contrast, lower spatial resolutions minimize the overestimation of distribution ranges, in particular of those species with small range distributions. For example, Rondinini et al. (2011) used a resolution of 300 × 300 m for their estimations of global mammal’ species richness.
Specie’s presence in each 5′ × 5′ grid cell was assigned with a value of one. The same procedure was repeated to assign the estimated values of ED, EDGE and HEDGE to the grid cells of each species’ occurrence, and maps were calculated by overlying individual grids. For example, the species richness map represents the sum of all presence grids. Under this spatial framework CPAs represent areas with the highest scores due to a high number of species regardless of ED, EDGE, and HEDGE scores or to a few species with high probability scores.
To understand how well these patterns of aquatic mammal conservation priorities are already included in existing MPAs, we used information from the World Database on Protected Areas website (http://protectedplanet.net/). We calculated the percentage of each species range within all designated MPAs of the world and to preserve areal relationships we first re-projected both the species ranges and the MPAs, to an equal area using Behrmann projection. We then iteratively intersected each marine species range with all the MPAs using the function joinPolys with the operator ‘INT’ (intersection) from the package PBS-Mapping (version 2.67). Species range percentage within all MPAs was calculated by contrasting the sum of their intersected areas with the total species range area. All analyses were performed in R (R Core Team 2013) and the final maps were created using ArcGIS v10.1.
Examples of aquatic mammal species that ranked among the top species for one or all methods, their corresponding conservation priority areas (CPAs), population status, and overall overlap with marine protected areas (MPAs)
Conservation priority area
Overlap of species range and MPAs (%)
Brazil to Argentina
Neophocaena asiaeorientalis and N. phocaenoides
Japan, East and South China Sea, Bay of Bengal, Arabian Sea
Not in database/2.35 % respectively
North Atlantic Ocean
North Atlantic Right Whale
North Pacific Right Whale
Hawaiian Monk Seal
Mediterranean Sea, Madeira, Nouadhibou
Mediterranean Monk Seal
Gulf of Alaska, California
Peru and Chile
Kurl and Aleutian Islands, Gulf of Alaska, California
Northern Fur Seal
Kurl and Aleutian Islands, Gulf of Alaska, California
Steller Sea Lion
Australian Sea Lion
Galapagos Sea Lion
Galapagos Fur Seal
Here we provide the first spatial analysis of phylogenetic conservation priorities for aquatic mammals. We consider four methods that essentially reflect two possible scenarios differing in how extinction risk is evaluated for the lower threat categories and data deficient species: the pessimistic approach and the IUCN50 approach. The two approaches give dramatically different results, in many cases highlighting different CPAs. The pessimistic approach gives more weight to phylogenetic diversity, while the IUCN50 gives more weight to extinction risk of species (May-Collado and Agnarsson 2011). Given that both perspectives are valid, we used a combination of these two scenarios to identify ConservationPriorityAreas, emerging as highly ranking under one or both of these approaches (see Fig. 3). These results provide a tool for conservation planning for aquatic mammals that supplements previous spatial studies using other prioritization criteria (Davidson et al. 2011; Kashner et al. 2011; Pompa et al. 2011), and may thus be useful in helping to guide future conservation effort.
Our results indicate that accumulative evolutionary distinctiveness and conservation priorities are in general concentrated in coast waters. This pattern could be an artifact of survey effort in coastal waters and in general reflect that aquatic mammal survey coverage, whether coastal or oceanic, is very limited (Jewell et al. 2012). Less than 25 % of the ocean surface has been surveyed and only 6 % has been covered frequently enough to allow estimations of population trends (Kaschner et al. 2012). In addition, spatial coverage is also significantly biased towards some ocean basins. Karchner et al. (2012) reported that with the exception of Antarctic waters, survey coverage was biased toward the northern hemisphere, especially US and northern European waters, which may explain the consensus among methods identifying the Aleutian and Hawaiian Islands as CPAs. Nevertheless, despite this potential data bias most CPAs were found in the southern hemisphere, suggesting that phylogenetic conservation priority methods do not simply reflect sampling effort, but identify areas that contain aquatic mammal communities including both evolutionarily unique species and those at risk.
As we discussed in our methods, CPAs were the result from the cumulative values for each metric in each cell. Thus CPAs may reflect a large number of species varying in conservation priority values or possibly only a few species with high values. The later seems to be the case for Hawaii, Nouadhibou, Madeira Island, Yangtze river, and Southern Brazil-Argentina where highly evolutionary unique species are endemic to those areas (Table 2). Other CPAs such as California, Southern Australia and New Zealand include many species, but only some of which are evolutionarily unique species. These areas are part of ranges of several species with very broad distribution ranges such as the sperm whale, pygmy and dwarf sperm whales, and blue whale. Interestingly, previous studies that have used species richness to identify ‘hotspot’ of aquatic mammal diversity (Pompa et al. 2011) and a combination of levels of imperilment with intrinsic and extrinsic factors to identify high risk areas for aquatic mammals (Davidson et al. 2011) agree with the CPAs identified here. Davidson et al. (2011) identified five major global hotspots of marine mammal species at risk. Within these major hotpots several locations overlap with those found in this study: Aleutian Islands, Alaska, California, Galapagos, Patagonia, South Africa, Japan, Indonesia, South Australia, and New Zealand. Pompa et al. (2011) identified nine ‘hotspots’ based solely on species richness and 11 irreplaceable key conservation sites, based on the presence of endemic species, five of these sites Hawaiian and Galapagos Islands, Mediterranean Sea, and the Yangtze river network were also identified as CPAs. Finally, Kashner et al. (2011) using an environmental suitability model predicted highest marine mammal richness in New Zealand, Japan, Baja California, Galapagos, the Southeast Pacific and Southern Ocean, all congruent with our study.
Within the CPAs identified here we highlight the presence of several top ranking conservation priority species among those are the extant monk seals (see Table 2). The UICN has estimated a 68 % reduction of Hawaiian monk seal abundance in the past 49 years, and projects an 86 % reduction in the next 15 years. The future for the Mediterranean monk seal seems bleak, current population estimates are about 350–450 individuals (IUCN2013). The Cap Blanc population in Nouadhibou is probably the most threatened, with less than 220 individuals. This is the last population with colonial structure, so its loss would also lead to the loss of a peculiar behavior amongst monk seals (e.g., Gonzalez 2006; Martinez-Jauregui et al. 2012; Gonzalez and Fernandez de Larrinoa 2013). Both species are facing fragmentation of their habitat that overlaps with a number of human activities, some of which affects them directly as bycatch in gillnets and bottom trawl nets particularly in the case of the Mediterranean monk seal (Gonzalez and Fernandez de Larrinoa 2013). In 1988 Hawaiian monk seal habitats were declared as ‘critical areas’ by the Endangered Species Act, limiting several federally authorized activities such permits for fishing, coastal development, and a number of military activities. However, the designation of critical habitat offers limited protection, allowing a number of non-federal activities such as boating and jet-skiing, and tour operations that might have an indirect impact in their recovery. For the Mediterranean monk seals, surveyed protected marine areas might help mitigate interactions with fisheries (Rowwe 2007). Despite growing efforts in protecting the species, only 4.5 % of their habitat is currently protected. In areas where it is protected such as in Madeira Island, Portugal the creation of a natural reserve and change in fishing gear has halted monk seal decline and helped their recovery (Pires et al. 2008; Hale et al. 2011) but such protected area is not in place in Nouadhibou yet (Gonzalez and Fernandez de Larrinoa 2013).
For cetaceans we would like to highlight the river dolphin Baiji and the coastal Franciscana. The Baiji dolphin is likely extinct, no sightings of the species have been made in recent years. In 2005, its population size was estimated to be less than 100 individuals (Dudgeon 2005). A number of restoration efforts have been made including establishing of natural and seminatural reserves in the middle and lower parts of the Yangtze River, and breeding programs. However, the extent of the human impact on this species habitat may not allow its recovery with ~5 % of the world’s total population living along the Yangtze River (Yang et al. 2006). In contrast with the Baiji, the Franciscana is population size is considered ‘healthy’ by the IUCN. However, the extent of bycatch mortality by nearshore gillnets in southern Brazil results in thousands of individuals killed every year, this is a major reason for concern (Danilewicz et al. 2010; Prado et al. 2013), particularly when less than 1 % of the species habitat is under protection. Current MPAs within the species range are few, most are small, sparse, and outside the Rio del Plata area where conservation priority values peaked. Conservation priorities species such as the Hector’s dolphins in New Zealand and finless porpoises (see Figs. 3 and 4) may benefit from expansion of local MPAs, which currently protect only a small percent of their habitat. In contrast, conservation priority species with global distribution such as sperm, blue, sei and fin whales, may benefit for a multinational management approach at the species level combined with protected areas in key breeding and feeding grounds.
Our results offer a spatial phylogeny-based conservation prioritization for aquatic mammals that complements prior findings. Given urgent need to invest management and conservation efforts and the Convention on Biological Diversity plan to protect 10 % of the world’s marine and coastal ecological regions by 2020, such analyses should be helpful tools in identifying important areas for consideration.
We thank EcoHealth Alliance for providing us with the resources to produce the spatial analysis and to Lisa Ballance, Roseli Pellens, and an anonymous reviewer for their comments that greatly improve this manuscript.
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