Skip to main content

Large-Scale Applications

  • Chapter
  • First Online:
Computing the Optical Properties of Large Systems

Part of the book series: Springer Theses ((Springer Theses))

  • 484 Accesses

Abstract

To test the methods developed in the last couple of chapters, a number of realistic large scale applications are focused on. Two different problems are considered in detail, the first one of which, the study of environmental effects on the excitons localised on bacteriochlorophyll (Bchl) sites in the Fenna-Matthews-Olson complex, has already been briefly introduced in the last chapter.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

eBook
USD 16.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    The optimised structures of both models of Bchl1, equivalent to those used in [3] were provided by Daniel Cole.

  2. 2.

    However, to converge Qy transitions of other Bchl sites it is often found that the larger system of 15 Å is needed. See the supplementary information of Ref. [3] for more details.

  3. 3.

    The fraction of charge-transfer character is obtained by determining the dominant Kohn–Sham transitions mixed into the transition density matrix. Since the Kohn–Sham states in the system are either localised on the dopant molecule or on the surrounding p-terphenyls, it is possible to identify transitions as charge-transfer states. Furthermore, transitions are compared to the ones obtained if the response density matrix is constrained onto the dopant molecule only.

References

  1. Tronrud, D.E., Wen, J., Gay, L., Blankenship, R.E.: The structural basis for the difference in absorbance spectra for the FMO antenna protein from various green sulfur bacteria. Photosynth. Res. 100, 79–87 (2009)

    Google Scholar 

  2. Fenna, R.E., Matthews, B.W.: Chlorophyll arrangement in a bacteriochlorophyll protein from Chlorobium limicola. Nature 258, 573 (1975)

    Article  ADS  Google Scholar 

  3. Cole, D.J., Chin, A.W., Hine, N.D.M., Haynes, P.D., Payne, M.C.: Toward ab initio optical spectroscopy of the fenna-matthews-olson complex. J. Phys. Chem. Lett. 4, 4206 (2013)

    Article  Google Scholar 

  4. Oxborrow, M., Breeze, J.D., Alford, N.M.: Room-temperature solid-state maser. Nature 488, 353–356 (2012)

    Article  ADS  Google Scholar 

  5. Perdew, J.P., Zunger, A.: Self-interaction correction to density-functional approximations for many-electron systems. Phys. Rev. B 23, 5048 (1981)

    Article  ADS  Google Scholar 

  6. Rietveld, H.M., Malsen, E.N., Clews, C.J.B.: An x-ray and neutron diffraction refinement of the structure of p-terphenyl. Acta Cryst. B26, 693 (1970)

    Article  Google Scholar 

  7. Pope, M., Swenberg, C.E.: Electronic Processes in Organic Crystals and Polymers, 2nd edn. Oxford University Press, New York (1999)

    Google Scholar 

  8. Cudazzo, P., Gatti, M., Rubio, A.: Excitons in molecular crystals from first-principles many-body perturbation theory: picene versus pentacene. Phys. Rev. B 86, 195307 (2012)

    Article  ADS  Google Scholar 

  9. Grimme, S., Parac, M.: Substantial errors from time-dependent density functional theory for the calculation of excited states of large \(\pi \) systems. Chem. Phys. Chem. 4, 292–295 (2003)

    Google Scholar 

  10. Kadantsev, E.S., Scott, M.J., Rubio, A.: Electronic structure and excitations in oligoacenes from ab initio calculations. J. Chem. Phys. 124, 134901 (2006)

    Article  ADS  Google Scholar 

  11. Biermann, D., Schmidt, W.: Diels-alder reactivity of polycyclic aromatic hydrocarbons. 1. Acenes and benzologs. J. Am. Chem. Soc. 102, 3163 (1980)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Tim Joachim Zuehlsdorff .

Rights and permissions

Reprints and permissions

Copyright information

© 2015 Springer International Publishing Switzerland

About this chapter

Cite this chapter

Zuehlsdorff, T.J. (2015). Large-Scale Applications. In: Computing the Optical Properties of Large Systems. Springer Theses. Springer, Cham. https://doi.org/10.1007/978-3-319-19770-8_8

Download citation

Publish with us

Policies and ethics