BION2SEL: An Ontology-Based Approach for the Selection of Molecular Biology Databases

  • Daniel Lichtnow
  • Ronnie Alves
  • Oscar Pastor
  • Verónica Burriel
  • José Palazzo Moreira de Oliveira
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 8826)

Abstract

The catalogs of molecular biology databases does not provide a full description of databases, so the user should select databases using limited information available. Taking into account this fact, in the context of an initiative called BioDBCore, a group of experts proposes core metadata definitions to describe the molecular biology databases. However, how to use these metadata to infer the quality of a database is a clear open issue. In the present work, we propose an ontology-based approach aiming to guide the database selection process from molecular biology database catalogs using these metadata.

Keywords

molecular biology databases database catalog data quality ontology database selection 

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Copyright information

© Springer International Publishing Switzerland 2014

Authors and Affiliations

  • Daniel Lichtnow
    • 1
  • Ronnie Alves
    • 2
    • 5
    • 6
  • Oscar Pastor
    • 3
  • Verónica Burriel
    • 3
  • José Palazzo Moreira de Oliveira
    • 4
  1. 1.Universidade Federal de Santa Maria, UFSMSanta MariaBrazil
  2. 2.Institut de Biologie ComputationnelleMontpellierFrance
  3. 3.Universitat Politècnica de ValènciaValenciaSpain
  4. 4.Universidade Federal do Rio Grande do Sul, UFRGSPorto AlegreBrazil
  5. 5.Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier, UMR 5506Université Montpellier 2, Centre National de la Recherche ScientifiqueMontpellierFrance
  6. 6.PPGCCUniversidade Federal do ParáBelémBrazil

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