Abstract
Fetal MRI reconstruction aims at finding a high-resolution image given a small set of low-resolution images. It is usually modeled as an inverse problem where the regularization term plays a central role in the reconstruction quality. Literature has considered several regularization terms s.a. Dirichlet/Laplacian energy [1], Total Variation (TV)-based energies [2,3] and more recently non-local means [4]. Although TV energies are quite attractive because of their ability in edge preservation, standard explicit steepest gradient techniques have been applied to optimize fetal-based TV energies. The main contribution of this work lies in the introduction of a well-posed TV algorithm from the point of view of convex optimization. Specifically, our proposed TV optimization algorithm for fetal reconstruction is optimal w.r.t. the asymptotic and iterative convergence speeds O(1/n2) and \(O(1/\sqrt{\varepsilon})\), while existing techniques are in O(1/n) and O(1/ε). We apply our algorithm to (1) clinical newborn data, considered as ground truth, and (2) clinical fetal acquisitions. Our algorithm compares favorably with the literature in terms of speed and accuracy.
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Keywords
- Fetal Brain
- Reconstruction Quality
- Normalize Root Mean Square Error
- Total Variation Energy
- SIAM Multiscale Modeling
These keywords were added by machine and not by the authors. This process is experimental and the keywords may be updated as the learning algorithm improves.
References
Gholipour, A., Estroff, J., Warfield, S.: Robust Super-Resolution Volume Reconstruction from Slice Acquisitions: Application to Fetal Brain MRI. IEEE TMI 29(10), 1739–1758 (2010)
Kuklisova-Murgasova, M., Quaghebeur, G., Rutherford, M., Hajnal, J., Schnabel, J.: Reconstruction of Fetal Brain MRI with Intensity Matching and Complete Outlier Removal. Medical Image Analysis 16, 1550–1564 (2012)
Rousseau, F., Kim, K., Studholme, C., Koob, M., Dietemann, J.-L.: On Super-Resolution for Fetal Brain MRI. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part II. LNCS, vol. 6362, pp. 355–362. Springer, Heidelberg (2010)
Rousseau, F., Oubel, E., Pontabry, J., Schweitzer, M., Studholme, C., Koob, M., Dietemann, J.: BTK: An Open-Source Toolkit for Fetal Brain MR Image Processing. Computer Methods and Programs in Biomedicine 109, 65–73 (2013)
Rousseau, F., Glenn, O., Iordanova, B., Rodriguez-Carranza, C., Vigneron, D., Barkovich, J., Studholme, C.: A Novel Approach to High Resolution Fetal Brain MR Imaging. In: Duncan, J.S., Gerig, G. (eds.) MICCAI 2005. LNCS, vol. 3749, pp. 548–555. Springer, Heidelberg (2005)
Buades, A., Coll, B., Morel, J.: A review of image denoising algorithms, with a new one. SIAM Multiscale Modeling and Simulation (MMS) 4(2), 490–530 (2005)
Gholipour, A., Estroff, J., Barnewolt, C., Connolly, S., Warfield, S.: Fetal Brain Volumetry Through MRI Volumetric Reconstruction and Segmentation. International Journal of Computer Assisted Radiology and Surgery 6(3), 329–339 (2011)
Charbonnier, P., Blanc-Féraud, L., Aubert, G., Barlaud, M.: Deterministic Edge-Preserving Regularization in Computed Imaging. IEEE TIP 6(2), 298–311 (1997)
Kim, K., Habas, P., Rousseau, F., Glenn, O., Barkovich, A., Studholme, C.: Intersection Based Motion Correction of Multi-Slice MRI for 3D in Utero Fetal Brain Image Formation. IEEE Transactions on Medical Imaging 29(1), 146–158 (2010)
Studholme, C.: Mapping Fetal Brain Development in utero Using MRI: The Big Bang of Brain Mapping. Review of Biomedical Engineering 13, 345–368 (2011)
Fogtmann, M., Seshamani, S., Kim, K., Chapman, T., Studholme, C.: A Unified Approach for Motion Estimation and Super Resolution Reconstruction from Structural Magnetic Resonance Imaging on Moving Subjects. In: Murgasova, M., Rousseau, F., Rueckert, D., Schnabel, J., Studholme, C., Zöllei, L., Gerig, G. (eds.) MICCAI Workshop on Perinatal and Paediatric Imaging, pp. 9–26 (2012)
Rudin, L.I., Osher, S., Fatemi, E.: Nonlinear Total Variation Based Noise Removal Algorithms. Physica D 60(1-4), 259–268 (1992)
Beck, A., Teboulle, M.: A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems. SIAM J. Imaging Sci. 2(1), 183–202 (2009)
Chambolle, A., Pock, T.: A First-Order Primal-Dual Algorithm for Convex Problems with Applications to Imaging. JMIV 40(1), 120–145 (2011)
Nesterov, Y.: Smooth Minimization of Non-Smooth Functions. Mathematic Programming 103, 127–152 (2005)
Yoo, T.S., Ackerman, M.J., Lorensen, W.E., Schroeder, W., Chalana, V., Aylward, S., Metaxas, D., Whitaker, R.: ITK - The Insight Toolkit. In: Medicine Meets Virtual Reality, pp. 586–592 (2002)
Tustison, N., Gee, J.: N4ITK: ITK for MRI Bias Field Correction (2009)
Gilboa, G., Osher, S.: Nonlocal Operators with Applications to Image Processing. SIAM Multiscale Modeling and Simulation (MMS) 7(3), 1005–1028 (2007)
Osher, S., Burger, M., Goldfarb, D., Yin, W.: An Iterative Regularization Method for Total Variation-based Image Restoration. SIAM MMS 4, 460–489 (2005)
Wu, C., Tai, X.: Augmented Lagrangian Method, Dual Methods, and Split Bregman Iteration for ROF, Vectorial TV, and High Order Models. SIAM SIIMS 3(3), 300–339 (2010)
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Tourbier, S., Bresson, X., Hagmann, P., Thiran, JP., Meuli, R., Cuadra, M.B. (2014). Efficient Total Variation Algorithm for Fetal Brain MRI Reconstruction. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014. MICCAI 2014. Lecture Notes in Computer Science, vol 8674. Springer, Cham. https://doi.org/10.1007/978-3-319-10470-6_32
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DOI: https://doi.org/10.1007/978-3-319-10470-6_32
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