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Software and Online Resources: Perspectives and Potential Applications

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Foodinformatics

Abstract

Chemical databases arose as a tool for the storage of chemical structures and related information. Governmental agencies and others’ initiatives from around the world have compiled chemical databases to serve specific purposes. After compilation, curation, implementation, and launch, the databases are maintained through continuous updates and corrections. Comparative analysis among databases allows for the detection of complementarity, redundancy, or uniqueness. In addition, it provides information about missing areas in property and/or chemical space. This is routinely performed in the drug discovery field, typically based on chemical structures. The translation of these analyses to other areas, such as flavor materials, is emerging. Discussed below are a number of currently available databases of use to those working in the food/flavor area. Representative software and online resources available for the chemoinformatic analysis of such databases is presented in the second section of this chapter. The last section presents the author’s perspectives of the field and potential applications with the intent of motivating the use of chemoinformatic tools to the food chemistry field.

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References

  1. Martinez-Mayorga K, Medina-Franco JL (2009) Chemoinformatics—applications in food chemistry, vol. 58. Elsevier, Burlington

    Google Scholar 

  2. Martínez-Mayorga K, Peppard TL, Yongye AB, Santos R, Giulianotti M, Medina-Franco JL (2011) Characterization of a comprehensive flavor database. J Chemometr 25:550–560

    Article  Google Scholar 

  3. Sprous DG, Salemme FR (2007) A comparison of the chemical properties of drugs and FEMA/FDA notified GRAS chemical compounds used in the food industry. Food Chem Toxicol 45:1419–1427

    Article  CAS  Google Scholar 

  4. Medina-Franco JL, Martínez-Mayorga K, Peppard TL, Del Rio A (2012) Chemoinformatic analysis of GRAS (Generally Recognized as Safe) flavor chemicals and natural products. PLoS ONE 7:e50798

    Article  CAS  Google Scholar 

  5. Femaflavor. http://www.femaflavor.org

  6. Hallagan JB, Hall RL (1995) FEMA GRAS—a GRAS assessment program for flavor ingredients. Regul Toxicol Pharm 21:422

    Article  CAS  Google Scholar 

  7. Hallagan JB, Hall RL (2009) Under the conditions of intended use—new developments in the FEMA GRAS program and the safety assesment of flavor ingredients. Food Chem Toxicol 47:267–278

    Article  CAS  Google Scholar 

  8. http://www.rifm.org/index.php

  9. http://www.iofi.org

  10. http://eur-lex.europa.eu/JOHtml.do?uri=OJ:L:2012:267:SOM:EN:HTML

  11. https://webgate.ec.europa.eu/sanco_foods/main/?event=display

  12. http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2012:267:FULL:EN:PDF

  13. http://www.accessdata.fda.gov/scripts/fcn/fcnNavigation.cfm?filter=&sortColumn=&rpt=eafusListing&displayAll=false#1

  14. http://www.usp.org/food-ingredients/food-chemicals-codex

  15. http://www.leffingwell.com/flavbase.htm

  16. Leffingwell J, Leffingwell D (2014) Perfumer Flavorist 39:26–37

    Google Scholar 

  17. http://www.vcf-online.nl/VcfHome.cfm

  18. http://www.leffingwell.com/baciseso.htm

  19. http://dir.perfumerflavorist.com/main/login.html;jsessionid=9EC896163AA3A88037DD0BC0E2CE6F65

  20. http://www.flavornet.org

  21. http://acree.foodscience.cornell.edu/flavornet.html

  22. Arnam H, Acreeb TE (1998) Flavornet: a database of aroma compounds based on odor potency in natural products. Dev Food Sci 40:27

    Article  Google Scholar 

  23. http://bioinf-applied.charite.de/superscent

  24. López-Vallejo F, Peppard TL, Medina-Franco JL, Martínez-Mayorga K (2011) Computational methods for the discovery of mood disorder therapies. Expert Opin Drug Discov 6:1227–1245

    Article  Google Scholar 

  25. Dunkel M, Schmidt U, Struck S, Berger L, Gruening B, Hossbach J, Jaeger IS, Effmert U, Piechulla B, Eriksson R, Knudsen J, Preissner R (2008) SuperScent–a database of flavors and scents. Nucleic Acids Res 37:D291–D294

    Article  Google Scholar 

  26. http://www.thegoodscentscompany.com/index.html

  27. http://www.phenol-explorer.eu/

  28. Wiener A, Shudler M, Levit A, Niv MY (2011) BitterDB: a database of bitter compounds. Nucleic Acids Res 40:D413–D419

    Article  Google Scholar 

  29. http://bitterdb.agri.huji.ac.il/bitterdb

  30. http://senselab.med.yale.edu

  31. http://www.sigmaaldrich.com/chemistry/flavors-and-fragrances.html

  32. http://frutaromfandfingredients.com/ingredients4u/Templates/showpage.asp?DBID=1&LNGID=1&TMID=84&FID=517

  33. Irwin JJ, Shoichet BK, Mysinger MM, Huang N, Colizzi F, Wassam P, Cao Y (2009) Automated docking screens: a feasibility study. J Med Chem 52:5712–5720

    Article  CAS  Google Scholar 

  34. Consortium TU (2014) Activities at the universal protein resource (UniProt). Nucleic Acids Res 32:W321–W326

    Google Scholar 

  35. Rost B, Yachdav G, Liu J (2004) The PredictProtein server. Nucleic Acids Res 32:W321–W326

    Article  CAS  Google Scholar 

  36. http://www.cdc.gov/

  37. http://www.rff.org/news/features/pages/food-safety-research-consortium.aspx

  38. http://www.combase.cc/index.php/en/

  39. http://bites.ksu.edu/

  40. http://foodrisk.org/exclusives/faremicrobial/

  41. http://www.ugacfs.org/

  42. http://www.vstech.com/healthcare-initiatives/food-nutrition-informatics.php

  43. Ahn Y-Y, Ahnert SE, Bagrow JP, Barabási A-L (2011) Flavor network and the principles of food pairing. Sci Rep 1:196

    Article  CAS  Google Scholar 

  44. Koenderink NJJP, Hulzebos JL, Roller S, Egan B, Top JL Antimicrobials on-line: concept and application for multidisciplinary knowledge exchange in the food domain. http://www.koenderink.info/nicole/pdf/Koenderink2003AFOT.pdf

    Google Scholar 

  45. Top JL, Rijgersberg H (2003) Modelling for decision support in the vegetable and fruit supply chain. Acta Hort 604:189–197

    Google Scholar 

  46. http://www.afsg.nl/InformationManagement/index.php?Itemid=0&id=21&option=com_content&task=view

  47. http://www.eatright.org/HealthProfessionals/content.aspx?id=6442471521

  48. http://www.law.georgetown.edu/oneillinstitute/

  49. Medina-Franco JL, Giulianotti MA, Welmaker GS, Houghten RA (2013) Shifting the single-target to the multi-target paradigm in drug discovery. Drug Discov Today 18:495–501

    Google Scholar 

  50. http://www.vcclab.org/

  51. http://www.molecularmovies.com/toolkit/

  52. http://www.chemaxon.com/

  53. http://www.chemcomp.com/

  54. http://schrodinger.com/

  55. http://www.statsoft.com/

  56. http://spotfire.tibco.com/

  57. www.miner3d.com/

  58. www.chemicalize.org/

  59. www.chemspider.com/

  60. www.elsevier.com/online-tools/reaxys

  61. http://cactus.nci.nih.gov/index.html

  62. http://www.uwm.edu.pl/biochemia/index.php/en/biopep

  63. http://www.molprint.com/

  64. http://sea.bkslab.org/

  65. http://www.vcclab.org/lab/

  66. http://www.pharmaexpert.ru/passonline/index.php

  67. http://bioserv.rpbs.univ-paris-diderot.fr/Help/FAFDrugs.html

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Acknowledgments

K.M-M. thanks the Institute of Chemistry-UNAM and DGAPA-UNAM for funding (PAPIIT IA200513-2). The authors also wish to thank Robertet Flavors for permission to publish this chapter.

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Correspondence to Karina Martinez-Mayorga .

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Martinez-Mayorga, K., Peppard, T., Medina-Franco, J. (2014). Software and Online Resources: Perspectives and Potential Applications. In: Martinez-Mayorga, K., Medina-Franco, J. (eds) Foodinformatics. Springer, Cham. https://doi.org/10.1007/978-3-319-10226-9_9

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