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In Search of Phylogeographic Patterns in the Northeastern Atlantic and Adjacent Seas

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Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life

Abstract

We reviewed 54 studies on teleost fishes and crustaceans inhabiting European waters to test for the emergence of phylogeographic patterns. Concerning latitudinal variation of genetic diversity, we found that: (1) contrary to the predictions of the “central-margin hypothesis,” only a minority of species (~10 %) revealed higher genetic diversity in the center of their distribution; (2) approximately a third of the fish had a peak of genetic diversity at their southern limit; (3) another substantial fraction of species (41 % for fishes and 72 % for crustaceans) showed little or no latitudinal variation of genetic diversity. Genetic structure expressed by significant FSTs varied widely among species from cases where Atlantic, North Sea, and the Mediterranean seem to correspond to distinct populations, to others where no structure could be detected across their entire range. Given the heterogeneity in sampling schemes we suggest that regular sampling across entire species ranges can improve our understanding of the marine phylogeography in Europe.

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Notes

  1. 1.

    www.webofknowledge.com/.

  2. 2.

    Fish Base (ed, by Froese R, Pauly D). Digital resource available at www.fishbase.org.

  3. 3.

    WoRMS—World Register of Marine Species (eds by Appeltans W, Bouchet P, Boxshall GA, De Broyer C, de Voogd NJ, Gordon DP, Hoeksema BW, Horton T, Kennedy M, Mees J, Poore GCB, Read G, Stöhr S, Walter TC, Costello MJ). Digital resource available at www.marinespecies.org.

  4. 4.

    www.biology.duke.edu/corona/.

  5. 5.

    http://fishpoptrace.jrc.ec.europa.eu/.

  6. 6.

    http://biocongroup.eu/MarinEra/Welcome.html.

References

  • Aboim MA, Menezes GM, Schlitt T, Rogers AD (2005) Genetic structure and history of populations of the deep-sea fish Helicolenus dactylopterus (Delaroche 1809) inferred from mtDNA sequence analysis. Mol Ecol 14:1343–1354. doi:10.1111/j.1365-294X.2005.02518.x

    Article  CAS  PubMed  Google Scholar 

  • Almada V, Almada F, Francisco S et al (2012) Unexpected high genetic diversity at the extreme northern geographic limit of Taurulus bubalis (Euphrasen 1786). PLoS ONE 7:e44404

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Almada VC, Robalo JI, Levy A et al (2009) Phylogenetic analysis of peri-mediterranean blennies of the genus Salaria: Molecular insights on the colonization of freshwaters. Mol Phylogenet Evol 52:424–431. doi:10.1016/j.ympev.2009.03.029

    Article  CAS  PubMed  Google Scholar 

  • Almada VC, Toledo JF, Brito A et al (2013) Complex origins of the lusitania biogeographic province and northeastern Atlantic fishes. Front Biogeogr 5:20–28

    Google Scholar 

  • Atarhouch T, Rüber L, Gonzalez EG et al (2006) Signature of an early genetic bottleneck in a population of Moroccan sardines (Sardina pilchardus). Mol Phylogenet Evol 39:373–383. doi:10.1016/j.ympev.2005.08.003

    Article  CAS  PubMed  Google Scholar 

  • Aurelle D, Guillemaud T, Afonso P et al (2003) Genetic study of Coris julis (Osteichthyes, Perciformes, Labridae) evolutionary history and dispersal abilities. C R Biol 326:771–785

    Article  CAS  PubMed  Google Scholar 

  • Bargelloni L, Alarcon JA, Alvarez MC et al (2005) The Atlantic-Mediterranean transition: discordant genetic patterns in two seabream species, Diplodus puntazzo (Cetti) and Diplodus sargus (L.). Mol Phylogenet Evol 36:523–535. doi:10.1016/j.ympev.2005.04.017

    Article  CAS  PubMed  Google Scholar 

  • Bargelloni L, Alarcon JA, Magoulas A et al (2003) Discord in the family sparidae (teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean divide. J Evol Biol 16:1149–1158

    Article  CAS  PubMed  Google Scholar 

  • Borsa P, Blanquer A, Berrebi P (1997) Genetic structure of the flounders Platichthys flesus and P. stellatus at different geographic scales. Mar Biol 129:233–246. doi:10.1007/s002270050164

    Article  CAS  Google Scholar 

  • Bremer JRA, Viñas J, Mejuto J et al (2005) Comparative phylogeography of the Atlantic bluefin tuna and swordfish: the combined effects of vicariance, secondary contact, intrograssion, and population expansion on the regional phylogenies of two highly migratory pelagic fishes. Mol Phylogen Evol 36:169–187. doi:10.1016/j.ympev.2004.12.011

    Article  Google Scholar 

  • Charrier G, Chenel T, Durand JD et al (2006) Discrepancies in phylogeographical patterns of two European anglerfishes (Lophius budegassa and Lophius piscatorius). Mol Phylogenet Evol 38:742–754. doi:10.1016/j.ympev.2005.08.002

    Article  CAS  PubMed  Google Scholar 

  • Consuegra S, De Leaniz CG, Serdio A et al (2002) Mitochondrial DNA variation in Pleistocene and modern Atlantic salmon from the Iberian glacial refugium. Mol Ecol 11:2037–2048

    Article  CAS  PubMed  Google Scholar 

  • Correia AT, Ramos A a, Barros F et al (2012) Population structure and connectivity of the European conger eel (Conger conger) across the north-eastern Atlantic and western mediterranean: integrating molecular and otolith elemental approaches. Mar Biol 159:1509–1525. doi:10.1007/s00227-012-1936-3

    Article  Google Scholar 

  • Daemen E, Cross T, Ollevier F, Volckaert F (2001) Analysis of the genetic structure of European eel (Anguilla anguilla) using microsatellite DNA and mtDNA markers. Mar Biol 139:755–764. doi:10.1007/s002270100616

    Article  CAS  Google Scholar 

  • Debes PV, Zachos FE, Hanel R (2008) Mitochondrial phylogeography of the European sprat (Sprattus sprattus L., Clupeidae) reveals isolated climatically vulnerable populations in the mediterranean sea and range expansion in the northeast Atlantic. Mol Ecol 17:3873–3888

    Article  CAS  PubMed  Google Scholar 

  • Domingues VS, Alexandrou M, Almada VC et al (2008a) Tropical fishes in a temperate sea: evolution of the wrasse Thalassoma pavo and the parrotfish Sparisoma cretense in the Mediterranean and the adjacent Macaronesian and Cape Verde Archipelagos. Mar Biol 154:465–474. doi:10.1007/s00227-008-0941-z

    Article  Google Scholar 

  • Domingues VS, Stefanni S, Brito A et al (2008b) Phylogeography and demography of the Blenniid Parablennius parvicornis and its sister species P. sanguinolentus from the northeastern Atlantic Ocean and the western Mediterranean Sea. Mol Phylogenet Evol 46:397–402. doi:10.1016/j.ympev.2007.05.022

    Article  PubMed  Google Scholar 

  • Domingues VS, Almada VC, Santos RS et al (2006a) Phylogeography and evolution of the triplefin Tripterygion delaisi (Pisces, Blennioidei). Mar Biol 150:509–519. doi:10.1007/s00227-006-0367-4

    Article  Google Scholar 

  • Domingues VS, Santos RS, Brito A, Almada VC (2006b) Historical population dynamics and demography of the Eastern Atlantic pomacentrid Chromis limbata (Valenciennes 1833). Mol Phylogenet Evol 40:139–147. doi:10.1016/j.ympev.2006.02.009

    Article  CAS  PubMed  Google Scholar 

  • Domingues VS, Bucciarelli G, Almada VC, Bernardi G (2005) Historical colonization and demography of the Mediterranean damselfish, Chromis chromis. Mol Ecol 14:4051–4063. doi:10.1111/j.1365-294X.2005.02723.x

    Article  PubMed  Google Scholar 

  • Domingues VS, Faria C, Stefanni S et al (2007a) Genetic divergence in the Atlantic-Mediterranean Montagu’s blenny, Coryphoblennius galerita (Linnaeus 1758) revealed by molecular and morphological characters. Mol Ecol 16:3592–3605. doi:10.1111/j.1365-294X.2007.03405.x

    Article  CAS  PubMed  Google Scholar 

  • Domingues VS, Santos RS, Brito A et al (2007b) Mitochondrial and nuclear markers reveal isolation by distance and effects of Pleistocene glaciations in the northeastern Atlantic and Mediterranean populations of the white seabream (Diplodus sargus, L.). J Exp Mar Bio Ecol 346:102–113

    Article  CAS  Google Scholar 

  • Eckert CG, Samis KE, Lougheed SC (2008) Genetic variation across species’ geographical ranges: the central-marginal hypothesis and beyond. Mol Ecol 17:1170–1188. doi:10.1111/j.1365-294X.2007.03659.x

    Article  CAS  PubMed  Google Scholar 

  • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491

    CAS  PubMed Central  PubMed  Google Scholar 

  • Faria R, Weiss S, Alexandrino P (2012) Comparative phylogeography and demographic history of European shads (Alosa alosa and A. fallax) inferred from mitochondrial DNA. BMC Evol Biol 12:194. doi:10.1186/1471-2148-12-194

    Article  PubMed Central  PubMed  Google Scholar 

  • Francisco SM, Castilho R, Soares M et al (2009) Phylogeography and demographic history of Atherina presbyter (Pisces: Atherinidae) in the North-eastern Atlantic based on mitochondrial DNA. Mar Biol 156:1421–1432. doi:10.1007/s00227-009-1182-5

    Article  CAS  Google Scholar 

  • Francisco SM, Faria C, Lengkeek W et al (2011) Phylogeography of the shanny Lipophrys pholis (Pisces: Blenniidae) in the NE Atlantic records signs of major expansion event older than the last glaciation. J Exp Mar Bio Ecol 403:14–20

    Article  Google Scholar 

  • Galarza JA, Turner GF, Macpherson E, Rico C (2009) Patterns of genetic differentiation between two co-occurring demersal species: the red mullet (Mullus barbatus) and the striped red mullet (Mullus surmuletus). Can J Fish Aquat Sci 66:1479–1490

    Google Scholar 

  • García-Merchán VH, Robainas-Barcia A, Abelló P et al (2012) Phylogeographic patterns of decapod crustaceans at the Atlantic-Mediterranean transition. Mol Phylogenet Evol 62:664–672. doi:10.1016/j.ympev.2011.11.009

    Article  PubMed  Google Scholar 

  • Gysels ES, Hellemans B, Pampoulie C, Volckaert FAM (2004) Phylogeography of the common goby, Pomatoschistus microps, with particular emphasis on the colonization of the Mediterranean and the North Sea. Mol Ecol 13:403–417. doi:10.1046/j.1365-294X.2003.02087.x

    Article  CAS  PubMed  Google Scholar 

  • Hickerson MJ, Cunningham CW (2006) Nearshore fish (Pholis gunnellus) persists across the North Atlantic through multiple glacial episodes. Mol Ecol 15:4095–4107. doi:10.1111/j.1365-294X.2006.03085.x

    Article  CAS  PubMed  Google Scholar 

  • Karaiskou N, Triantafyllidis A, Triantaphyllidis C (2004) Shallow genetic structure of three species of the genus Trachurus in European waters. Mar Ecol Prog Ser 281:193–205

    Article  Google Scholar 

  • Kettle AJ, Morales-Muñiz A, Roselló-Izquierdo E et al (2011) Refugia of marine fish in the northeast Atlantic during the last glacial maximum: concordant assessment from archaeozoology and palaeotemperature reconstructions. Clim Past 7:181–201. doi:10.5194/cp-7-181-2011

    Article  Google Scholar 

  • Kruskal WH, Wallis WA (1952) Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47:583–621

    Article  Google Scholar 

  • Kuhner MK (2009) Coalescent genealogy samplers: windows into population history. Trends Ecol Evol 24:86–93. doi:10.1016/j.tree.2008.09.007

    Article  PubMed  Google Scholar 

  • Larmuseau MHD, Van Houdt JKJ, Guelinckx J et al (2009) Distributional and demographic consequences of Pleistocene climate fluctuations for a marine demersal fish in the north-eastern Atlantic. J Biogeogr 36:1138–1151. doi:10.1111/j.1365-2699.2008.02072.x

    Article  Google Scholar 

  • Lemaire C, Versini J-J, Bonhomme F (2005) Maintenance of genetic differentiation across a transition zone in the sea: discordance between nuclear and cytoplasmic markers. J Evol Biol 18:70–80. doi:10.1111/j.1420-9101.2004.00828.x

    Article  CAS  PubMed  Google Scholar 

  • Lundy CJ, Moran P, Rico C et al (1999) Macrogeographical population differentiation in oceanic environments: a case study of European hake (Merluccius merluccius), a commercially important fish. Mol Ecol 8:1889–1898

    Article  CAS  PubMed  Google Scholar 

  • Luttikhuizen PC, Campos J, van Bleijswijk J et al (2008) Phylogeography of the common shrimp, Crangon crangon (L.) across its distribution range. Mol Phylogenet Evol 46:1015–1030. doi:10.1016/j.ympev.2007.11.011

    Article  CAS  PubMed  Google Scholar 

  • Maggs CA, Castilho R, Foltz D et al (2008) Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa. Ecology 89:S108–S122

    Article  PubMed  Google Scholar 

  • Magoulas A, Castilho R, Caetano S et al (2006) Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Mol Phylogenet Evol 39:734–746. doi:10.1016/j.ympev.2006.01.016

    Article  CAS  PubMed  Google Scholar 

  • Magoulas A, Tsimenides N, Zouros E (1996) Mitochondrial DNA phylogeny and the reconstruction of the population history of a species: the case of the European anchovy (Engraulis encrasicolus). Mol Biol Evol 13:178–190

    Article  CAS  PubMed  Google Scholar 

  • Mäkinen HS, Merilä J (2008) Mitochondrial DNA phylogeography of the three-spined stickleback (Gasterosteus aculeatus) in Europe-evidence for multiple glacial refugia. Mol Phylogenet Evol 46:167–182. doi:10.1016/j.ympev.2007.06.011

    Article  PubMed  Google Scholar 

  • Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York

    Google Scholar 

  • Neigel JE (2002) Is FST obsolete? Conservation Genetics 3:167–173. doi:10.1023/A:1015213626922

  • Nesbø CL, Rueness EK, Iversen S a et al (2000) Phylogeography and population history of Atlantic mackerel (Scomber scombrus L.): a genealogical approach reveals genetic structuring among the eastern Atlantic stocks. Proc Biol Sci 267:281–292. doi:10.1098/rspb.2000.0998

    Article  PubMed Central  PubMed  Google Scholar 

  • Nielsen EE, Nielsen PH, Meldrup D, Hansen MM (2004) Genetic population structure of turbot (Scophthalmus maximus L.) supports the presence of multiple hybrid zones for marine fishes in the transition zone between the Baltic Sea and the North Sea. Mol Ecol 13:585–595

    Article  PubMed  Google Scholar 

  • Palero F, Abelló P, Macpherson E et al (2008) Phylogeography of the European spiny lobster (Palinurus elephas): Influence of current oceanographical features and historical processes. Mol Phylogenet Evol 48:708–717. doi:10.1016/j.ympev.2008.04.022

    Article  CAS  PubMed  Google Scholar 

  • Papadopoulos LN, Peijnenburg KTCA, Luttikhuizen PC (2005) Phylogeography of the calanoid copepods Calanus helgolandicus and C. euxinus suggests Pleistocene divergences between Atlantic, Mediterranean, and black sea populations. Mar Biol 147:1353–1365. doi:10.1007/s00227-005-0038-x

    Article  Google Scholar 

  • Papetti C, Zane L, Bortolotto E et al (2005) Genetic differentiation and local temporal stability of population structure in the euphausiid Meganyctiphanes norvegica. Mar Ecol Prog Ser 289:225–235. doi:10.3354/meps289225

    Article  CAS  Google Scholar 

  • Patarnello T, Volckaert FMJ, Castilho R (2007) Pillars of Hercules: is the Atlantic-Mediterranean transition a phylogeographical break? Mol Ecol 16:4426–4444. doi:10.1111/j.1365-294X.2007.03477.x

    Article  PubMed  Google Scholar 

  • Quinteiro J, Rodríguez-Castro J, Rey-Méndez M (2007) Population genetic structure of the stalked barnacle Pollicipes pollicipes (Gmelin 1789) in the northeastern Atlantic: influence of coastal currents and mesoscale hydrographic structures. Mar Biol 153:47–60. doi:10.1007/s00227-007-0783-0

    Article  Google Scholar 

  • Remerie T, Bourgois T, Peelaers D et al (2006) Phylogeographic patterns of the mysid Mesopodopsis slabberi (Crustacea, Mysida) in Western Europe: evidence for high molecular diversity and cryptic speciation. Mar Biol 149:465–481. doi:10.1007/s00227-005-0235-7

    Article  Google Scholar 

  • Robalo JI, Castilho R, Francisco SM et al (2012) Northern refugia and recent expansion in the North Sea: the case of the wrasse Symphodus melops (Linnaeus 1758). Ecol Evol 2:153–164. doi:10.1002/ece3.77

    Article  PubMed Central  PubMed  Google Scholar 

  • Robalo JI, Crespo AM, Castilho R et al (2013) Are local extinctions and recolonizations continuing at the colder limits of marine fish distributions? Halobatrachus didactylus (Bloch and Schneider 1801), a possible candidate. Mar Biol 160:2461–2467. doi:10.1007/s00227-013-2241-5

    Article  Google Scholar 

  • Robalo JI, Lima CS, Francisco SM, et al (2014) Phylogeography of the fivebeard rockling (Ciliata mustela, Linnaeus 1758) J Phylogen Evol Biol 2:123. doi: 10.4172/2329-9002.1000123

  • Rock J, Ironside J, Potter T et al (2007) Phylogeography and environmental diversification of a highly adaptable marine amphipod, Gammarus duebeni. Hered (Edinb) 99:102–111. doi:10.1038/sj.hdy.6800971

    Article  CAS  Google Scholar 

  • Rolland JL, Bonhomme F, Lagardère F et al (2007) Population structure of the common sole (Solea solea) in the Northeastern Atlantic and the Mediterranean Sea: revisiting the divide with EPIC markers. Mar Biol 151:327–341. doi:10.1007/s00227-006-0484-0

    Article  Google Scholar 

  • Roman J, Palumbi SR (2004) A global invader at home: population structure of the green crab, Carcinus maenas, in Europe. Mol Ecol 13:2891–2898. doi:10.1111/j.1365-294X.2004.02255.x

    Article  CAS  PubMed  Google Scholar 

  • Santos RS, Hawkins S, Monteiro LR et al (1995) Marine research, resources and conservation in the Azores. Aquat Conserv Mar Freshw Ecosyst 5:311–354. doi:10.1002/aqc.3270050406

    Article  Google Scholar 

  • Shemesh E, Huchon D, Simon-Blecher N, Achituv Y (2009) The distribution and molecular diversity of the Eastern Atlantic and Mediterranean chthamalids (Crustacea, Cirripedia). Zool Scr 38:365–378. doi:10.1111/j.1463-6409.2008.00384.x

    Article  Google Scholar 

  • Sotelo G, Morán P, Posada D (2008) Genetic Identification of the Northeastern Atlantic Spiny Spider Crab as Maja Brachydactyla Balss 1922. J Crustac Biol 28:76–81. doi:10.1651/07-2875R.1

    Article  Google Scholar 

  • Sotelo G, Posada D, Morán P (2009) Low-mitochondrial diversity and lack of structure in the velvet swimming crab Necora puber along the Galician coast. Mar Biol 156:1039–1048. doi:10.1007/s00227-009-1148-7

    Article  Google Scholar 

  • Stamatis C, Triantafyllidis A, Moutou KA, Mamuris Z (2004) Mitochondrial DNA variation in Northeast Atlantic and Mediterranean populations of Norway lobster, Nephrops norvegicus. Mol Ecol 13:1377–1390. doi:10.1111/j.1365-294X.2004.02165.x

    Article  Google Scholar 

  • StatSoft I (2003) STATISTICA (data analysis software system), version 6. www.statsoft.com

  • Stefanni S, Knutsen H (2007) Phylogeography and demographic history of the deep-sea fish Aphanopus carbo (Lowe, 1839) in the NE Atlantic: vicariance followed by secondary contact or speciation? Mol Phylogenet Evol 42:38–46. doi:10.1016/j.ympev.2006.05.035

    Article  CAS  PubMed  Google Scholar 

  • Triantafyllidis A, Apostolidis AP, Katsares V et al (2005) Mitochondrial DNA variation in the European lobster (Homarus gammarus) throughout the range. Mar Biol 146:223–235. doi:10.1007/s00227-004-1435-2

    Article  CAS  Google Scholar 

  • Wares JP, Cunningham CW (2001) Phylogeography and historical ecology of the North Atlantic intertidal. Evolution 55:2455–2469

    Article  CAS  PubMed  Google Scholar 

  • Was A, Gosling E, Hoarau G (2010) Microsatellite analysis of plaice (Pleuronectes platessa L.) in the NE Atlantic: weak genetic structuring in a milieu of high gene flow. Mar Biol 157:447–462. doi:10.1007/s00227-009-1331-x

    Article  CAS  Google Scholar 

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Acknowledgments

This study was funded by the Eco-Ethology Research Unit’ Strategic Plan (PEst-OE/MAR/UI0331/2011)—Fundação para a Ciência e a Tecnologia - FCT (partially FEDER funded). SMF was supported by an FCT grant (SFRH/BPD/84923/2012).

We dedicate this chapter in loving memory of Vítor Almada whose tragic loss we suffered during the course of this work.

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  1. Eco-Ethology Research Unit, ISPA University Institute, Rua Jardim do Tabaco 34, 1149-041, Lisbon, Portugal

    Sara M. Francisco, Joana I. Robalo, André Levy & Vítor C. Almada

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  1. Sara M. Francisco
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  2. Joana I. Robalo
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  3. André Levy
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  4. Vítor C. Almada
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Correspondence to Sara M. Francisco .

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  1. CNRS, Laboratoire Évolution Biologique et Modélisation, Université d'Aix-Marseille, Marseille, France

    Pierre Pontarotti

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Francisco, S.M., Robalo, J.I., Levy, A., Almada, V.C. (2014). In Search of Phylogeographic Patterns in the Northeastern Atlantic and Adjacent Seas. In: Pontarotti, P. (eds) Evolutionary Biology: Genome Evolution, Speciation, Coevolution and Origin of Life. Springer, Cham. https://doi.org/10.1007/978-3-319-07623-2_15

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