Skip to main content

Groupwise Deformable Registration of Fiber Track Sets Using Track Orientation Distributions

  • Conference paper
  • First Online:
Computational Diffusion MRI and Brain Connectivity

Part of the book series: Mathematics and Visualization ((MATHVISUAL))

Abstract

Diffusion-weighted imaging (DWI) and tractography allow to study the macroscopic structure of white matter in vivo. We present a novel method for deformable registration of unsegmented full-brain fiber track sets extracted from DWI data. Our method attempts to align the track orientation distributions (TODs) of multiple subjects, rather than individual tracks. As such, it can handle complex track configurations and allows for multi-resolution registration. We validated the registration method on synthetically deformed DWI data and on data of 15 healthy subjects, and achieved sub-voxel accuracy in dense white matter structures. This work is, to the best of our knowledge, the first demonstration of direct registration of probabilistic tractography data.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Anderson, A.W.: Measurement of fiber orientation distributions using high angular resolution diffusion imaging. Magn. Reson. Med. 54(5), 1194–1206 (2005)

    Article  Google Scholar 

  2. Caan, M.W.A., Van Vliet, L.J., Majoie, C.B.L.M., Van Der Graaff, M.M., Grimbergen, C.A., Vos, F.M.: Nonrigid point set matching of white matter tracts for diffusion tensor image analysis. IEEE Trans. Biomed. Eng. 58(9), 2431–2440 (2011)

    Article  Google Scholar 

  3. Calamante, F., Tournier, J.D., Jackson, G.D., Connelly, A.: Track-density imaging (TDI): super-resolution white matter imaging using whole-brain track-density mapping. NeuroImage 53(4), 1233–1243 (2010)

    Article  Google Scholar 

  4. Descoteaux, M., Angelino, E., Fitzgibbons, S., Deriche, R.: Apparent diffusion coefficients from high angular resolution diffusion imaging: estimation and applications. Magn. Reson. Med. 56(2), 395–410 (2006)

    Article  Google Scholar 

  5. Dhollander, T., Veraart, J., Van Hecke, W., Maes, F., Sunaert, S., Sijbers, J., Suetens, P.: Feasibility and advantages of diffusion weighted imaging atlas construction in Q-Space. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Toronto. LNCS, vol. 6892, pp. 166–173. Springer, Heidelberg (2011)

    Google Scholar 

  6. Dhollander, T., Emsell, L., Van Hecke, W., Maes, F., Sunaert, S., Suetens, P.: Robustifying probabilistic tractography by using track orientation distributions. In: Proceedings of the International Society for Magnetic Resonance in Medicine, Salt Lake City, 2013, vol. 21, p. 744

    Google Scholar 

  7. Du, J., Goh, A., Qiu, A.: Diffeomorphic metric mapping of high angular resolution diffusion imaging based on Riemannian structure of orientation distribution functions. IEEE Trans. Med. Imaging 31(5), 1021–1033 (2012)

    Article  Google Scholar 

  8. Durrleman, S., Fillard, P., Pennec, X., Trouvé, A., Ayache, N.: Registration, atlas estimation and variability analysis of white matter fiber bundles modeled as currents. NeuroImage 55(3), 1073–1090 (2011)

    Article  Google Scholar 

  9. Guevara, P., Duclap, D., Poupon, C., Marrakchi-Kacem, L., Fillard, P., Le Bihan, D., Leboyer, M., Houenou, J., Mangin, J.F.: Automatic fiber bundle segmentation in massive tractography datasets using a multi-subject bundle atlas. NeuroImage 61(4), 1083–1099 (2012)

    Article  Google Scholar 

  10. Holland, D., Kuperman, J.M., Dale, A.M.: Efficient correction of inhomogeneous static magnetic field-induced distortion in echo planar imaging. NeuroImage 50(1), 175–183 (2010)

    Article  Google Scholar 

  11. Mayer, A., Zimmerman-Moreno, G., Shadmi, R., Batikoff, A., Greenspan, H.: A supervised framework for the registration and segmentation of white matter fiber tracts. IEEE Trans. Med. Imaging 30(1), 131–145 (2011)

    Article  Google Scholar 

  12. O’Donnell, L.J., Westin, C.F.: Automatic tractography segmentation using a high-dimensional white matter atlas. IEEE Trans. Med. Imaging 26(11), 1562–1575 (2007)

    Article  Google Scholar 

  13. O’Donnell, L.J., Wells, W.M., Golby, A.J., Westin, C.F.: Unbiased groupwise registration of white matter tractography. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Nice. LNCS, vol. 7512, pp. 123–130. Springer, Heidelberg (2012)

    Google Scholar 

  14. Raffelt, D., Tournier, J.D., Fripp, J., Crozier, S., Connelly, A., Salvado, O.: Symmetric diffeomorphic registration of fibre orientation distributions. NeuroImage 56(3), 1171–1180 (2011)

    Article  Google Scholar 

  15. Raffelt, D., Tournier, J.D., Crozier, S., Connelly, A., Salvado, O.: Reorientation of fiber orientation distributions using apodized point spread functions. Magn. Reson. Med. 67(3), 844–855 (2012)

    Article  Google Scholar 

  16. Siless, V., Glaunès, J., Guevara, P., Mangin, J.F., Poupon, C., Le Bihan, D., Thirion, B., Fillard, P.: Joint T1 and brain fiber log-demons registration using currents to model geometry. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012, Nice. LNCS, vol. 7511, pp. 57–65. Springer, Heidelberg (2012)

    Google Scholar 

  17. Tournier, J.D., Calamante, F., Connelly, A.: Robust determination of the fibre orientation distribution in diffusion MRI: non-negativity constrained super-resolved spherical deconvolution. NeuroImage 35(4), 1459–1472 (2007)

    Article  Google Scholar 

  18. Tournier, J.D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22(1), 53–66 (2012)

    Article  Google Scholar 

  19. Vercauteren, T., Pennec, X., Perchant, A., Ayache, N.: Diffeomorphic demons: efficient non-parametric image registration. NeuroImage 45(1), S61–S72 (2009)

    Article  Google Scholar 

  20. Wassermann, D., Bloy, L., Kanterakis, E., Verma, R., Deriche, R.: Unsupervised white matter fiber clustering and tract probability map generation: applications of a Gaussian process framework for white matter fibers. NeuroImage 51(1), 228–241 (2010)

    Article  Google Scholar 

  21. Ziyan, U., Sabuncu, M.R., O’Donnell, L.J., Westin, C.F.: Nonlinear registration of diffusion MR images based on fiber bundles. In: Ayache, N., Ourselin, S., Maeder, A. (eds.) MICCAI 2007, Brisbane. LNCS, vol. 4791, pp. 351–358. Springer, Heidelberg (2007)

    Google Scholar 

  22. Zvitia, O., Mayer, A., Shadmi, R., Miron, S., Greenspan, H.K.: Co-registration of white matter tractographies by adaptive-mean-shift and Gaussian mixture modeling. IEEE Trans. Med. Imaging 29(1), 132–145 (2010)

    Article  Google Scholar 

Download references

Acknowledgements

D. Christiaens is supported by a Ph.D. grant of the Agency for Innovation by Science and Technology (IWT).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Daan Christiaens .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Christiaens, D., Dhollander, T., Maes, F., Sunaert, S., Suetens, P. (2014). Groupwise Deformable Registration of Fiber Track Sets Using Track Orientation Distributions. In: Schultz, T., Nedjati-Gilani, G., Venkataraman, A., O'Donnell, L., Panagiotaki, E. (eds) Computational Diffusion MRI and Brain Connectivity. Mathematics and Visualization. Springer, Cham. https://doi.org/10.1007/978-3-319-02475-2_14

Download citation

Publish with us

Policies and ethics