Skip to main content

Lipoamide dehydrogenase

  • Chapter

Part of the book series: MCBU Molecular and Cell Biology Updates ((MCBU))

Summary

In this review the structure and function of the lipoamide dehydrogenase component of the keto acid dehydrogenase complexes is discussed. Three structural models are available and in recent years many new genes have been sequenced and expressed. Unsolved is the role that many non-complex-bound lipoamide dehydrogenases play in metabolism and the physiological function of free lipoic acid. Central in catalysis is the problem of stabilization of the 2-electron reduced enzyme. Mutagenesis studies and the use of a modified flavin cofactor revealed the various factors involved in this stabilization in which also the core component of the complex has a function.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Aharonowitz, Y.A., Gay, Y., Schreiber, R. and Cohen, G. (1993) Characterization of a broad-range disulfide reductase from Streptomyces clavuligerus and its possible role in beta-lactam biosynthesis. J. Bacteriology 175: 623–629.

    CAS  Google Scholar 

  • Ala’Aldeen, D.A.A., Weston, V, Baldwin, T.J. and Boriello, S.P. (1995) The gene cluster encoding components of the pyruvate dehydrogenase complex of Neisseria meningitidis: detection and sequence analysis. J. Med. Microbiol 42: 148.

    Google Scholar 

  • Allen, A.G. and Perham, R.N. (1991) Two lipoyl domains in the dihydrolipoamide acetyltransferase chain of the pyruvate dehydrogenase complex of Streptococcus faecalis. FEBS Lett. 287: 206–210.

    Article  PubMed  CAS  Google Scholar 

  • Arscott, L.D. and Williams, C.H., Jr. (1994) R- and S-dihydrolipoic acid derivatives as substrates of lipoamide dehydrogenase. In: K. Yagi (ed.): Flavins and Flavoproteins 1993, Walter de Gruyter, Berlin, pp 527–530.

    Google Scholar 

  • Bastiaens, P.I.H., van Hoek, A., Wolkers, W.F., Brochon, J.C. and Visser, A.J.W.G. (1992) Comparison of the dynamical structures of lipoamide dehydrogenase and glutathione reductase by time resolved polarized flavin fluorescence. Biochemistry 31: 7050–7060.

    Article  PubMed  CAS  Google Scholar 

  • Benen, J., van Berkel, W., Zak, Z., Visser, T., Veeger, C. and De Kok, A. (1991) Lipoamide dehydrogenase from Azotobacter vinelandii: site-directed mutagenesis of the His450-Glu455 diad. Spectral properties of wild type and mutated enzymes. Eur. J. Biochem. 202: 863–872.

    Article  PubMed  CAS  Google Scholar 

  • Benen, J., van Berkel, W., Veeger, C. and de Kok, A. (1992) Lipoamide dehydrogenase from Azotobacter vinelandii. The role of the C-terminus in catalysis and dimer stabilization. Eur. J. Biochem. 207: 499–505.

    Article  PubMed  CAS  Google Scholar 

  • Benen, J., van Berkel, W., Dieteren, N., Arscott, D., Williams, C.H., Jr., Veeger, C. and De Kok, A. (1992) Lipoamide dehydrogenase from Azotobacter vinelandii: site-directed mutagenesis of the His 450-Glu455 diad. Kinetics of wild type and mutated enzymes. Eur. J. Biochem. 207: 487–497.

    Article  PubMed  CAS  Google Scholar 

  • Berks, B.C., McEwan, A.G. and Ferguson, S.J. (1993) Membrane-associated NADH-dehydrogenase activities in Rhodobacter capsulatus: purification of a dihydrolipoyl dehydrogenase. J. Gen. Microbiol. 139: 1841–1851.

    PubMed  CAS  Google Scholar 

  • Biewenga, G.P., de Jong, J. and Bast, A. (1994) Lipoic acid favors thiolsulfinate formation after hypochlorous acid scavenging: a study with lipoic acid derivatives. Arch. Biochem. Biophys. 312: 114–120.

    Article  PubMed  CAS  Google Scholar 

  • Bosma, H.J., de Kok A., Westphal, A.H. and Veeger, C. (1984) The composition of the pyruvate dehydrogenase complex from Azotobacter vinelandii. Does a unifying model exist for the complexes from gram-negative bacteria? Eur. J. Biochem. 142: 541–549.

    Article  PubMed  CAS  Google Scholar 

  • Burns, G., Brown, T., Hatter, K. and Sokatch, J.R. (1989) Sequence analysis of the lpdV gene for lipoamide dehydrogenase of branched-chain-oxoacid dehydrogenase of Pseudomonas putida, Eur. J. Biochem. 179: 61–69.

    Article  PubMed  CAS  Google Scholar 

  • Claiborne, A., Ross, R.P., Ward, D., Parsonage, D. and Crane III, E.J. (1994) Flavoprotein peroxide and disulfide reductases and their roles in Streptococcal oxidative metabolism. In: K. Yagi (ed.): Flavins and Flavoproteins 1993, Walter de Gruyter, Berlin, pp 587–596.

    Google Scholar 

  • De Kok, A., Berg, A., van Berkel, W., Fabish-Kijowska, A., van den Akker, F., Mattevi, A. and Hoi, W.G.J. (1994) The pyruvate dehydrogenase complex from Azotobacter vinelandii. In: K. Yagi (ed.): Flavins and Flavoproteins 1993, Walter de Gruyter, Berlin, pp 535–544.

    Google Scholar 

  • Danson, M.J., McQuattie, A. and Stevenson, K.J. (1986) Dihydrolipoamide dehydrogenase from halophilic archaebacteria: purification and properties of the enzyme from Halobacterium halobium. Biochemistry 25: 3880–3884.

    Article  CAS  Google Scholar 

  • Eggink, G., Engel, H., Vriend, G., Terpstra, P. and Witholt, B. (1990) Rubredoxin reductase of Pseudomonas oleovorans. Structural relationship to other flavoprotein oxidoreductases based on one NAD and two FAD fingerprints. J. Mol. Biol. 212: 135–142.

    Article  PubMed  CAS  Google Scholar 

  • Else, A.J., Hough, D.W. and Danson, M.J. (1993) Cloning, sequencing, and expression of Trypanosoma brucei dihydrolipoamide dehydrogenase. Eur. J. Biochem. 212: 423–429.

    Article  PubMed  CAS  Google Scholar 

  • Grishin, N.V. and Phillips, M.A. (1994) The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequence. Protein Sci. 3: 2455–2458.

    Article  PubMed  CAS  Google Scholar 

  • Gunsalus, I.C., Barton, L.S. and Gruber, W. (1956) Biosynthesis and structure of lipoic acid derivatives. J. Am. Chem. Soc. 78: 1763–1766.

    Article  CAS  Google Scholar 

  • Hamilä, H., Palva, A., Paulin, L., Arvidson, S. and Palva, I. (1990) Secretory S complex of Bacillus subtilus: sequence analysis and identity to pyruvate dehydrogenase. J. Bacteriology 172: 5052–5063.

    Google Scholar 

  • Hamilä, H. (1991) Lipoamide dehydrogenase of Staphylococcus aureus: nucleotide sequence and sequence analysis. Biochim. Biophys. Acta 1129: 119–123.

    Google Scholar 

  • Handelman, G.J., Han, D., Tritschler, H. and Packer, L. (1994) α-lipoic acid reduction by mammalian cells to the dithiol form, and release into the culture medium. Biochem. Pharmacol. 47: 1725–1730.

    Article  PubMed  CAS  Google Scholar 

  • Hein, S. and Steinbüchel, A. (1994) Biochemical and molecular characterization of the Alcaligenes eutrophus pyruvate dehydrogenase complex and identification of a new type of dihydrolipoamide dehydrogenase. J. Bacteriology 176: 4394–4408.

    CAS  Google Scholar 

  • Kalia, Y.N., Brocklehurst, S.M., Hipps, D.S., Appela, E., Sakaguchi, K. and Perham, R.N. (1993) The high resolution structure of the peripheral subunit binding domain of dihydrolipoamide acetyltransferase from the pyruvate dehydrogenase complex of Bacillus stearothermophilus. J. Mol. Biol. 230: 323–341.

    Article  PubMed  CAS  Google Scholar 

  • Karplus, P.A. and Schulz, G. (1989) Substrate binding and catalysis by glutathione reductase as derived from refined enzyme: substrate crystal structures at 2 Å resolution. J. Mol. Biol. 210: 163–180.

    Article  PubMed  CAS  Google Scholar 

  • Kellog, R.M., Kruizinga, W., Bystrykh, L.V., Dijkhuizen, L. and Harder, W. (1992) Structural analysis of a stereochemical modification of flavin adenine dinucleotide in alcohol oxidase from methylotrophic yeasts. Tetrahedron 48: 4147–4162.

    Article  Google Scholar 

  • Kraulis, P.J. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24: 946–950.

    Article  Google Scholar 

  • Krüger, N., Oppermann, F.B., Lorenzl, H. and Steinbüchel, A. (1994) Biochemical and molecular characterization of the Clostridium magnum acetoin dehydrogenase enzyme system. J. Bacteriology 176: 3614–3630.

    Google Scholar 

  • Lessard, I.A.D. and Perham, R.N. (1995) Interaction of component enzymes with the peripheral subunit–binding domain of the pyruvate dehydrogenase multienzyme complex of Bacillus stearothermophilus: stoichiometry and specificity in self assembly. Biochem. J. 306: 727–733.

    PubMed  CAS  Google Scholar 

  • Liu, T.-C., Kim, H., Arizmendi, C., Kitano, A. and Patel, M.S. (1993) Identification of two missense mutations in a dihydrolipoamide dehydrogenase-deficient patient. Proc. Natl. Acad. Sci. USA 90: 5186–5190.

    Article  PubMed  CAS  Google Scholar 

  • Maeda-Yorita, K., Russell, G.C., Guest, J.R., Massey, V. and Williams, C.H., Jr. (1991) Properties of lipoamide dehydrogenase altered by site-directed mutagenesis at a key residue (I184Y) in the pyridine nucleotide binding domain. Biochemistry 30: 11788–11795.

    Article  PubMed  CAS  Google Scholar 

  • Maeda-Yorita, K., Russell, G.C., Guest, J.R., Massey, V. and Williams, C.H., Jr. (1994) Modulation of the oxidation-reduction potential of the flavin in lipoamide dehydrogenase from Escherichia coli by alteration of a nearby charged residue, K53R. Biochemistry 33: 6213–6220.

    Article  PubMed  CAS  Google Scholar 

  • Mattevi, A., Schierbeek, A.J. and Hoi, W.G.J. (1991) Refined crystal structure of lipoamide dehydrogenase from Azotobacter vinelandii at 2.2 Å resolution. A comparison with the structure of glutathione reductase. J. Mol. Biol. 220: 975–994.

    Article  PubMed  CAS  Google Scholar 

  • Mattevi, A., de Kok, A. and Perham, R.N. (1992) The pyruvate dehydrogenase multienzyme complex. Curr. Opin. Struct. Biol. 2: 877–887.

    Article  CAS  Google Scholar 

  • Mattevi, A., Obmolova, G., Kalk, K.H., Sokatch, J., Betzel, C.H. and Hoi, W.GJ. (1992) The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45 Å resolution. Proteins 13: 336–351.

    Article  PubMed  CAS  Google Scholar 

  • Mattevi, A., Obmolova, G., Kalk, K.H., Van Berkel, W.J.H. and Hol, W.GJ (1993) The refined crystal structure of Pseudomonas fluorescens lipoamide dehydrogenase at 2.8 Å resolution: Analysis of redox and thermostability properties. J. Mol. Biol. 230: 1200–1215.

    Article  Google Scholar 

  • Meyer, M., Dietrichs, D., Schmidt, B. and Andreesen, J.R. (1991) Thioredoxin elicits a new dihydrolipoamide dehydrogenase activity by interaction with the electron-transferring flavoprotein in Clostridium litoralis and Eubacterium acidaminophilum. J. Bacteriology 173: 1509–13.

    CAS  Google Scholar 

  • Oppermann, F.B. and Steinbüchel, A. (1994) Identification and molecular characterization of the aco genes encoding the Pelobacter carbinolicus acetoin dehydrogenase enzyme system. J. Bacteriology 176: 469–485.

    CAS  Google Scholar 

  • Otulakowski, G., Robinson, B.H. and Willard, H.F. (1988) Gene for lipoamide dehydrogenase maps to human chromosome 7. Som. Cell. Mol. Gen. 14: 411–414.

    Article  CAS  Google Scholar 

  • Palmer, J.A., Hatter, K. and Sokatch, J.R. (1991a) Cloning and sequence analysis of the LPD-glc structural gene of Pseudomonas putida. J. Bacteriology 173: 3109–3116.

    CAS  Google Scholar 

  • Palmer, J.A., Madhusudhan, K.T., Hatter, K. and Sokatch, J.R. (1991) Cloning, sequencing and transcriptional analysis of the structural gene of LPD-3, the third lipoamide dehydrogenase of Pseudomonas putida. Eur. J. Biochem. 202: 231–240.

    Article  PubMed  CAS  Google Scholar 

  • Pick, U., Haramaki, N., Constantinescu, A., Handelman, G.J., Tritschler, H.J. and Packer, L. (1995) Glutathione reductase and lipoamide dehydrogenase have opposite stereospecificities for α-lipoic acid enantiomers. Biochem. Biophys. Res. Comm. 206: 724–730.

    Article  PubMed  CAS  Google Scholar 

  • Pons, G., Raefsky-Estrin, C., Carothers, D.J., Pepin, R.A., Javed, A.A., Jesse, B.W., Ganapathi, M.K., Samols, D. and Patel, M.S. (1988) Cloning and cDNA sequence of the dihydrolipoamide dehydrogenase component of human alpha ketoacid dehydrogenase complexes. Proc. Natl. Acad. Sci. USA 85: 1422–1426.

    Article  PubMed  CAS  Google Scholar 

  • Reed, J.K. (1973) Studies on the kinetic mechanism of lipoamide dehydrogenase from rat liver mitochondria. J. Biol. Chem. 248: 4834–4839.

    PubMed  CAS  Google Scholar 

  • Richarme, G. (1989) Purification of a new dihydrolipoamide dehydrogenase from Escherichia coli. J. Bacteriology 171: 6580–6585.

    CAS  Google Scholar 

  • Sahlman, L. and Williams, C.H., Jr. (1989) Lipoamide dehydrogenase from Escherichia coli. Steady state kinetics of the physiological reaction. J. Biol. Chem. 264: 8039–8045.

    PubMed  CAS  Google Scholar 

  • Schiering, N., Kabsch, W., Moore, M.J., Distefano, M.D., Walsh, C.T. and Pai, E.F. (1991) Structure of the detoxification catalyst mercuric ion reductase from Bacillus sp. strain RC607. Nature 352: 168–172.

    Article  PubMed  CAS  Google Scholar 

  • Schulze, E., Westphal, A.H., Boumans, H. and De Kok, A. (1991) Site-directed mutagenesis of the dihydrolipoyl transacetylase component (E2p) of the pyruvate dehydrogenase complex from Azotobacter vinelandii. Binding of the peripheral components E1p and E3. Eur. J. Biochem. 202: 841–848.

    Article  PubMed  CAS  Google Scholar 

  • Silva, R., Selman, M., Guillen, G., Herrera, L., Fernandez, J.R., Novoa, L.L., Morales, J., Morrera, V., Gonzalez, S., Tamargo, B., del Valle, J.A., Caballero, E., Alvarez, A., Coizeau, E., Cruz, S. and Mussachio, A. (1991) Nucleotide sequence coding for an outer membrane protein from Neisseria meningitidis and use of said protein in vaccine preparation. Eur. Patent Application 0 474 313 A2.

    Google Scholar 

  • Snoep, J.L., Westphal, A.H., Benen, J.A.E., Teixeira de Mattos, M.J., Neijssel, O.M. and de Kok, A. (1992) Isolation and characterization of the pyruvate dehydrogenase complex of anaerobically grown Enterococcus faecalis NCTC 775. Eur. J. Biochem. 203: 245–250.

    Article  PubMed  CAS  Google Scholar 

  • Snoep, J.L., De Graef, M.R., Westphal, A.H., De Kok, A., Teixeira de Mattos, M.J. and Neijssel, O.M. (1993) Differences in sensitivity to NADH of purified pyruvate dehydrogenase complexes of Enterococcus faecalis, Lactococcus lactis, Azotobacter vinelandii and Escherichia coli: Implications for their activity in vivo. FEMS Microbiol. Lett. 114: 279–284.

    Article  PubMed  CAS  Google Scholar 

  • Swaving, J., Weijers, C.A.G.M., van Ooyen, A.J.J, and de Bont, J.A.M. (1995) Complementation of Xanthobacter Py2 mutants defective in epoxyalkane degradation, and expression and nucleotide sequence of the complementing DNA fragment. Microbiology 141: 477–484.

    Article  PubMed  CAS  Google Scholar 

  • Thijssen, H.H.W., Janssen, Y.P.G. and Vervoort, L.T.M. (1994) Microsomal lipoamide reductase provides vitamin K epoxide reductase with reducing equivalents. Biochem. J. 291: 277–280.

    Google Scholar 

  • Van Berkel, W.J.H., van den Berg, W.A.M. and Miiller, F. (1988) Large-scale preparation and reconstitution of apo-flavoproteins with special reference to butyryl-CoA dehydrogenase from Megasphaera elsdenii. Eur. J. Biochem. 178: 197–207.

    Article  PubMed  Google Scholar 

  • Van Berkel, W.J.H., Benen, J.A.E. and Snoek, M.C. ( 1991a On the FAD-induced dimerization of apo-lipoamide dehydrogenase from Azotobacter vinelandii and Pseudomonas fluorescens. Kinetics of reconstitution. Eur. J. Biochem. 197: 769–779.

    Article  PubMed  Google Scholar 

  • Van Berkel, W.J.H., Regelink, A.G., Beintema, J.J. and de Kok, A. (1991) The conformational stability of the redox states of lipoamide dehydrogenase from Azotobacter vinelandii. Eur. J. Biochem. 202: 863–872.

    Article  PubMed  Google Scholar 

  • Van Berkel, W.J.H., Eppink, M.H.M. and Schreuder, H.A. (1994) Crystal structure of p-hydroxybenzoate hydroxylase reconstituted with the modified FAD present in alcohol oxidase from methylotrophic yeasts: Evidence for an arabinoflavin. Protein Science 3: 2245–2253.

    Article  PubMed  Google Scholar 

  • Vettakkorumakankav, N.N. Danson, M.J., Hough, D.W., Stevenson, K.J., Davison, M. and Young, J. (1992) Dihydrolipoamide dehydrogenase from the halophilic archaebacterium Haloferax volcanii: characterization and N-terminal sequence. Biochem. Cell. Biol. 70: 70–75.

    Article  PubMed  CAS  Google Scholar 

  • Vettakkorumakankav, N.N., Stevenson, K.J., Schalkwyk, L.C. and Doolittle, W.F. (1994) Disruption of the gene coding for dihydrolipoamide dehydrogenase in Haloferax volcanii by homologous recombination. In: K. Yagi (ed.): Flavins and Flavoproteins 1993, Walter de Gruyter, Berlin, pp 519–522.

    Google Scholar 

  • Westphal, A.H., Fabisz-Kijovska, A., Kester, H., Obels, P.P. and DeKok, A. (1995) The interaction between lipoamide dehydrogenase and the peripheral-component-binding domain from Azotobacter vinelandii pyruvate dehydrogenase complex. Eur. J. Biochem.; in press.

    Google Scholar 

  • Williams, C.H., Jr. (1992) Lipoamide dehydrogenase, Glutathione reductase, Thioredoxin reductase and Mercuric reductase — Family of flavoprotein transhydrogenases. In: F. Miiller (ed.): Chemistry and Biochemistry of Flavoenzymes, Vol. 3, CRC Press, Boca Raton, pp 121–211.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1996 Birkhäuser Verlag Basel/Switzerland

About this chapter

Cite this chapter

de Kok, A., van Berkel, W.J.H. (1996). Lipoamide dehydrogenase. In: Patel, M.S., Roche, T.E., Harris, R.A. (eds) Alpha-Keto Acid Dehydrogenase Complexes. MCBU Molecular and Cell Biology Updates. Birkhäuser Basel. https://doi.org/10.1007/978-3-0348-8981-0_4

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-8981-0_4

  • Publisher Name: Birkhäuser Basel

  • Print ISBN: 978-3-0348-9853-9

  • Online ISBN: 978-3-0348-8981-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics