Skip to main content

Iterons of stringently controlled plasmids and DNA fingerprinting

  • Chapter
DNA Fingerprinting: State of the Science

Part of the book series: Progress in Systems and Control Theory ((EXS))

Summary

DNA probes which detect polymorphic, repetitive sequences in a variety of genomes have been developed using different approaches. Naturally occurring plasmids, with repeated units termed iterons near or within their origins (ori) of replication, could be of interest for the development of probes, possibly even revealing novel minisatellite families in mammals involved in replicational processes. We used the plasmids P1, pSC101 and RSF1010 or their PCR amplified ori regions as probes in Southern blot hybridisations with mammalian DNA. At low stringency they generated reproducible fingerprint-like patterns. A bovine genomic library was screened at the same stringency with the PCR-amplified ori region of PI containing the five times repeated core sequence 5’-ATGTGTGNTGNNGGG-3’ to generate a probe for cattle DNA with higher specificity.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Ali S, Müller CR, Epplen JT (1986) DNA fingerprinting by oligonucleotide probes specific for simple repeats. Hum Genet 74: 239–243

    Article  Google Scholar 

  • Birnboim HC, Doly J (1979) A rapid akaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res 7: 1513–1523

    Article  Google Scholar 

  • Collick A, Jeffreys AJ (1990) Detection of a novel minisatellite specific DNA-binding protein. Nucleic Acids Res 18: 625–629

    Article  Google Scholar 

  • Crawford AM, Buchanan FC, Fraser KM, Robinson AJ, Hill DF (1991) Repeat sequences from complex ds viruses can be used as minisatellite probes for DNA fingerprinting. Animal Genetics 22: 177–181

    Article  Google Scholar 

  • Frey J, Bagdasarian M (1989). The molecular biology of IncQ plasmids. In: Thomas CM (ed) Promiscuous Plasmids of Gram-negative Bacteria. Academic Press, London: 79–94

    Google Scholar 

  • Jeanpierre M (1987) A rapid method for the purification of DNA from blood. Nucleic Acids Res 15: 9611

    Article  Google Scholar 

  • Jeffreys AJ, Wilson V, Thein SL (1985) Hypervariable minisatellite regions in human DNA. Nature 314: 67–73

    Article  Google Scholar 

  • Kaukine J and Varvio S-L (1992) Artiodactyl retroposons: association with microsatellites and use in SINEmorph detection by PCR. Nucleic Acids Res 20: 2955–2958

    Article  Google Scholar 

  • Linder P, Churchward G, Guixian X, Yi-Yi Y, Caro L (1985) An essential replication gene, repA, of plasmid pSC101 is autoregulated. J Mol Biol 181: 383–393

    Article  Google Scholar 

  • Nakamura Y, Leppert M, O’Connell P, Wolff R, Holm T, Culver M, Martin C, Fujimoto E, Hoff M, Kumlin E and White R (1987) Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 235: 1616–1622

    Article  Google Scholar 

  • Novick RP (1987) Plasmid Incompatibility. Microbiol Rev 51: 381–395

    Google Scholar 

  • Persson C and Nordström K (1986) Control of replication of the broad host range plasmid RSF 1010: The incompatibility determinant consists of directly repeated DNA sequences. Mol Gen Genet 203: 189–192

    Article  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.

    Google Scholar 

  • Sanger F, Nikeln S, Coulson AR (1977) DNA sequencing with chaintermination inhibitors. Proc Natl Acad Sci USA 74: 5463–5467

    Article  Google Scholar 

  • Scott J (1984) Regulation of plasmid replication. Microbiol Rev 48: 2–23

    Google Scholar 

  • Vassart G, Georges M, Monsieur EH (1987) Hypervariable minisatellites in human and animal DNA. Science 235: 683–684

    Article  Google Scholar 

  • Vergnaud G (1989) Polymers or random short oligonucleotides detect polymorphic loci in the human genome. Nucleic Acids Res 19: 7623–7630

    Article  Google Scholar 

  • Vieira J, Messing J (1982) The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19: 259–268

    Article  Google Scholar 

  • Weber JL (1990) Informativeness of human (dC-dA)n × (dG — dT)n polymorphisms. Genomics 7: 524–530

    Article  Google Scholar 

  • Westneat DF, Noon WA, Reeve HK and Aquadro CF (1988) Improved hybridization conditions for DNA “fingerprints ”probed with M13. Nucleic Acids Res NAC 16: 4161

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1993 Springer Basel AG

About this chapter

Cite this chapter

Huebscher, K.J., Dolf, G., Frey, J. (1993). Iterons of stringently controlled plasmids and DNA fingerprinting. In: Pena, S.D.J., Chakraborty, R., Epplen, J.T., Jeffreys, A.J. (eds) DNA Fingerprinting: State of the Science. Progress in Systems and Control Theory. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-8583-6_8

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-8583-6_8

  • Publisher Name: Birkhäuser, Basel

  • Print ISBN: 978-3-7643-2906-8

  • Online ISBN: 978-3-0348-8583-6

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics