Summary
The chromosomal distribution of minisatellites (cloned and/or detected using natural or synthetic tandem repeats) is strikingly different in man and mouse. In man, the vast majority is clustered in the terminal band of a subset of chromosome arms. Interestingly, the class of shorter tandem repeats called microsatellites is widespread along the chromosomes, suggesting that minisatellites can be created or maintained only in certain regions. In order to gain a better knowledge of these areas, we have studied a sub-telomeric cosmid from the pseudoautosomal region.
Sixty kilo bases of human genomic DNA starting approximately 20 kilobases from the human sex chromosomes telomere have previously been independently isolated in two cosmid clones (locus DXYSI4) (Cooke et al., 1985); Rouyer et al., 1986). We have studied in more detail one of the two cosmids from this locus and found that it contains four different minisatellite structures representing 20 kilo bases of the cosmid. These structures are unrelated to each other or to the mini satellite family described by Jeffreys et al. (1985). They display different degrees of polymorphism correlated with varying amounts of inner homogeneity. Combined with the previous description of an additional mini satellite (Cooke et al., 1985; Inglehearn and Cooke, 1990) in the contiguous cosmid, our observation shows that these structures may represent an important proportion of the DNA in sub-telomeric regions.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
Ali S, Müller CR, Epplen JT (1986) DNA finger printing by oligonucleotide probes specific for simple repeats. Hum Genet 74: 239–243
Armour JAL, Povey S, Jeremiah S, Jeffreys AJ (1990) Systematic cloning of human minisatellites from ordered array charomid libraries. Genomics 8: 501–512
Armour JAL, Vergnaud G, Crosier M, Jeffreys AJ (1992) Isolation of human minisatellite loci detected by synthetic tandem repeat probes: direct comparison with cloned DNA fingerprinting probes. Human Molecular Genetics 1: 319–323
Bell GI, Serby MJ, Rutter WJ (1982) The highly polymorphic region near the human insulin gene is composed of simple tandemly repeating sequences. Nature 295: 31–35
Bernardi G, Bernardi G (1986) The human genome and its evolutionary context. Cold Spring Harbor Symp Quant Biol 51: 479–487
Blonden LAJ, den Dunnen JT, van Paassen HMB, Wapenaar MC, Grootscholten PM, Ginjaar HB, Bakker E et al. (1989) High resolution deletion breakpoint mapping in the DMD gene by whole cosmid hybridization. Nucleic Acids Res 17: 5611–5621
Brown WRA (1988) A physical map of the human pseudoautosomal region. EMBO J 7: 2377–2385
Brown WRA (1989) Molecular cloning of human telomeres in yeast. Nature 338: 774–776
Cooke HJ, Brown WRA, Rappold GA (1985) Hypervariable telomeric sequences from the human sex chromosomes are pseudoautosomal. Nature 317: 687
Cross SH, Allshire RC, McKay SJ, McGill NI, Cooke HJ (1989) Cloning of human telomeres by complementation in yeast. Nature 338: 771–774
Dutrillaux B (1973) Nouveau systèème de marquage chromosomique: les bandes T. Chromosoma 41: 395–402
Dutrillaux B (1979) Chromosomal evolution in primates: tentative phylogeny from Microcebus murinus (Prosimian) to man. Hum Genet 48: 251–314
Ellis NA, Goodfellow PJ, Pym B, Smith M, Palmer M, Frischauf A-M, Goodfellow PN (1989) The pseudoautosomal boundary in man is defined by an Alu repeat sequence inserted on the Y chromosome. Nature 337: 81–84
Georges M, Gunawardana A, Threadgill D, Lathrop M, Olsaker I, Mishra A, Sargeant L et al. (1991) Characterization of a set of variable number of tandem repeat markers conserved in bovidae. Genomics 11: 24–32
Inglehearn CF, Cooke HJ (1990) A VNTR immediately adjacent to the human pseudoautosomal telomere. Nucleic Acids Res 18: 471–476
Jarman AP, Wells RA (1989) Hypervariable minisatellites: recombinators or innocent bystanders. Trends Genet 5: 367–371
Jeffreys JJ, Wilson V, Thein SL (1985) Hypervariable ‘minisatellite’ regions in human DNA. Nature 314: 67–73
Jeffreys AJ, Royle NJ, Wilson V, Wong Z (1988) Spontaneous mutation rates to new length alleles at tandem-repetitive hypervariable loci in human DNA. Nature 332: 278–281
Jones DSC, Schofield JP (1990) A rapid method for isolating high quality plasmid DNA suitable for DNA sequencing. Nucleic Acids Res 18: 7463–7464
Julier C, de Gouyon B, Georges M, Guénet JL, Nakamura Y, Avner P, Lathrop GM (1990) Minisatellite linkage maps in the mouse by cross-hybridization with human probes containing tandem repeats. Proc Natl Acad Sci USA 87: 4585–4589
Lauthier V, Mariat D, Vergnaud G (1992) CEB15 detects a VNTR locus (Het: 92%) on chromosome lp. Human Molecular Genetics 1: 63
Lauthier V, Mariat D, Zoroastro M, Vergnaud G (1991a) A synthetic probe STR14C19, detects a new polymorphic locus at 16pter (D16S282). Nucleic Acids Res 19: 4015
Lauthier V, Mariat D, Zoroastro M, Vergnaud G (1991b) A synthetic probe, STR14C13, detects a new polymorphic locus on chromosome arm 7q (D7S450). Nucleic Acids Res 19: 4014
Lauthier V, Vergnaud G (1992) CEB13 detects a VNTR locus (Het: 93%) on chromosome 7q. Human Molecular Genetics 1: 64
Mariat D, De Gouyon B, Julier C, Lathrop M, Vergnaud G (1993) Genetic mapping through the use of synthetic tandem repeats in the mouse genome. Mammalian Genome 4: 135–140
Mariat D, Guérin G, Bertaud M, Vergnaud G (1992) Modulation of polymorphic loci detection with synthetic tandem repeat variants. Mammalian Genome 3: 546–549
Mariat D, Vergnaud G (1992) Detection of polymorphic loci in various genomes with Synthetic Tandem Repeats. Genomics 12: 454–458
Nakamura Y, Carlson M, Krapcho K, Kanamori M, White R (1988) New approach for isolation of VNTR markers. Am J Hum Genet 43: 854–859
Nakamura Y, Leppert M, O’Connell P, Wolff R, Holm T, Culver M, Martin C et al. (1987) Variable number of tandem repeat (VNTR) markers for human gene mapping. Science 235: 1616–1622
Page DC, Bieker K, Brown LG, Hinton S, Leppert M, Lalouel JM, Lathrop M et al. (1987) Linkage, physical mapping, and DNA sequence analysis of pseudoautosomal loci on the human X and Y chromosomes. Genomics 1: 243–256
Petit C, Levilliers J, Weissenbach J (1988) Physical mapping of the human pseudo-autosomal region, comparison with genetic linkage map. EMBO J 7: 2369–2376
Rappold GA, Lehrach H (1988) A long range restriction map of the pseudoautosomal region by partial digest PFGE analysis from the telomere. Nucleic Acids Res 16: 5361–5377
Rouyer R, de la Chapelle A, Andersson M, Weissenbach J (1990) An interspersed repeated sequence specific for human subtelomeric regions. EMBO J 9: 505–514
Rouyer F, Simmler MC, Vergnaud G, Johnsson C, Levilliers J, Petit C, Weissenbach J (1986) The pseudoautosomal region of the human sex chromosomes. Cold Spring Harbor Symp Quant Biol 51: 221–228
Royle NJ, Clarkson RE, Wong Z, Jeffreys AJ (1988) Clustering of hypervariable minisatellites in the proterminal regions of human autosomes. Genomics 3: 352–360
Schäfer R, Zischler H, Birsner U, Becker A, Epplen JT (1988) Optimized oligonucleotide probes for DNA fingerprinting. Electrophoresis 9: 369–374
Vergnaud G (1989) Polymers of random short oligonucleotides detect polymorphic loci in the human genome. Nucleic Acids Res 17: 7623–7630
Vergnaud G, Mariat D, Apiou F, Aurias A, Lathrop M, Lauthier V (1991a) The use of synthetic tandem repeats to isolate new VNTR loci: cloning of a human hypermutable sequence. Genomics 11: 135–144
Vergnaud G, Mariat D, Zoroastro M, Lauthier V (1991b) Detection of single and multiple polymorphic loci by synthetic tandem repeats of short oligonucleotides. Electrophoresis 12: 134–140
Weissenbach J, Gyapay G, Dib C, Vignal A, Morissette J, Milasseau P, Vaysseix G et al. (1992) A second-generation linkage map of the human genome. Nature 359: 794–801
White R, Lalouel J-M, Lathrop M, Leppert M, Nakamura Y, O’Connell P (1990) “Linkage maps of Man (Homo Sapiens)”. In: S. J. O’Brian (ed.) Genetics Maps. Locus Maps of Complex Genomes, 5th edition, Cold Spring Harbor Laboratory Press, Vol. 5, pp 134–157
Wong Z, Wilson V, Patel I, Povey S, Jeffreys AJ (1987) Characterization of a panel of highly variable minisatellites cloned from human DNA. Annu. Hum. Genet. 51: 269–288
Wyman AR, White R (1980) A highly polymorphic locus in human DNA. Proc. Natl. Acad. Sci. USA 77: 6754–6758
Zischler H, Kammerbauer C, Studer R, Grzeschik K-H, Epplen JT (1992) Dissecting (CAC)5/(GTG)5 multilocus fingerprints from man into individual locus-specific, hypervariable components. Genomics 13: 983–990
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 1993 Springer Basel AG
About this chapter
Cite this chapter
Vergnaud, G. et al. (1993). Detection, cloning, and distribution of minisatellites in some mammalian genomes. In: Pena, S.D.J., Chakraborty, R., Epplen, J.T., Jeffreys, A.J. (eds) DNA Fingerprinting: State of the Science. Progress in Systems and Control Theory. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-8583-6_4
Download citation
DOI: https://doi.org/10.1007/978-3-0348-8583-6_4
Publisher Name: Birkhäuser, Basel
Print ISBN: 978-3-7643-2906-8
Online ISBN: 978-3-0348-8583-6
eBook Packages: Springer Book Archive

