Abstract
The obvious first step in any systematics or population genetics study is to focus on a group of organisms or a level of interest. We assume that these issues are self-explanatory and the reader is referred to the accompanying volume (EXS 92) for examples of the application of molecular techniques to a wide range of questions and a summary of the problems that can arise during the course of such studies. Equally important in the initial stages of the study are sampling strategy, collection, storage, vouchering and archiving. These last two points are especially critical since no standard protocol currently exists for the disposition of tissue or DNA vouchers to scientifically validate the results of a study. Fortunately, this situation is changing as various museums and research universities establish biorepositories for the long-term storage of genetic resources.
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References
DeSalle R, Williams AK, George M (1994) Isolation and characterisation of animal mitochondrial DNA. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Meth ods in Enzymology Vol. 224, Molecular 3 Evolution: Producing the Biochemical Data. Academic Press, San Diego, CA, 176–204
Sytsma KJ, Givnish TJ, Smith JF, Hahn WJ (1994) Collection and storage of land 4 plant samples for macromolecular stu¬dies. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Methods in Enzymology Vol. 224, Molecular Evolution: Produ¬cing the Biochemical Data. Academic Press, San Diego, CA, 23–37
Dessauer HC, Cole CJ, Hafner MS (1990) Collection and storage of tissues. In: DM Hillis, C Moritz (eds): Molecular Sys¬tematics. Sinauer, Sunderland, MA, 25–41
Dessauer HC, Cole CJ, Hafner MS (1996) Collection and storage of tissues. In: DM Hillis, C Moritz, BK Mable (eds): Mo-lecular Systematics. 2nd Edition. Si¬nauer, Sunderland, MA, 29–47
Brown TA (1999) How ancient DNA may help in understanding the origin and spread of agriculture. Philosophical Transactions of the Royal Society of London, Series B - Biological Sciences 354: 89–97
Arctander P (1988) Comparative studies of avian DNA by restriction fragment length polymorphism analysis: Convenient procedures based on blood samples from live birds. Journal of Ornithology 129: 205–216
Lipkin E, Shalom A, Khatib H, Soller M et al. (1993) Milk as a source of deoxyribonucleic acid and as a substrate for the polymerase chain reaction. Journal of Dairy Science 76: 2025–2032
Gonser RA, Collura RV (1996) Waste not, want not: toe-clips as a source of DNA. Journal of Herpetology 30: 445–447
Mockford SW, Wright JM, Snyder M, Herman TB (1999) A non-destructive source of DNA from hatchling freshwater turtles for use in PCR base assays. Herpetological Review 30: 148–149
Goossens B, Waits LP, Taberlet P (1998) Plucked hair samples as a source of DNA - Reliability of dinucleotide microsatellite genotyping. Molecular Ecology 7: 1237–1241
Khoshoo TN (1998) Assessing genetic diversity in wild mega animals using noninvasive methods. Current Science 74: 13–14
Taberlet P, Waits LP (1998) Noninvasive genetic sampling. Trends in Ecology & Evolution 13: 26–27
Strathmann MF (1987) Reproduction and Development of Marine Invertebrates of the Northern Pacific Coast. University of Washington Press, Seattle, WA
Dick M, Bridge DM, Wheeler WC, De-Salle R (1994) Collection and storage of invertebrate samples. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Methods in Enzymology Vol. 224, Molecular Evolution: Producing the Biochemical Data. Academic Press, San Diego, CA, 51–65
Koch DA, Duncan GA, Parsons TJ, Pruess KP et al. (1998) Effects of preservation methods, parasites, and gut contents of black flies (Diptera, Simuliidae) on polymerase chain reaction products. Journal of Medical Entomology 35: 314–318
Dorn PL, Selgean S, Guillot M (1997) Simplified method for preservation and polymerase chain reaction amplification of Trypanosoma cruzi DNA in human blood. Memorias do Instituto Oswaldo Cruz 92: 253–255
Mori SA, Holm-Nielsen LB (1981) Recommendations for botanists visiting neotropical countries. Taxon 30: 87–91
Davis SD, Droop SJM, Gregerson P, Henson L et al. (1986) Plants in Danger. What do we know? International Union for the Conservation of Nature and Natural Resources, Cambridge, UK
Soltis PS, Soltis DE (1993) Ancient DNA. Prospects and limitations. New Zealand Journal of Botany 31: 203–209
Handt O, Hoss M, Krings M, Pääbo S (1994) Ancient DNA - methodological challenges. Experientia 50: 524–529
Thomas WK, Pääbo S (1994) DNA sequences from old tissue remains. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Methods in Enzymology Vol. 224, Molecular Evolution: Producing the Biochemical Data. Academic Press, San Diego, CA, 406–419
Pääbo S (1989) Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification. Proceedings of the National Academy of Sciences U.S.A. 86: 1939–1943
Yagi N, Satonaka K, Horio M, Shimogaki H et al. (1996) The role of DNAse and EDTA on DNA degradation in formaldehyde fixed tissues. Biotechnic & Histochemistry 71: 123–129
Adams RP, Zhong M, Fei Y (1999) Preservation of DNA in plant specimens - inactivation and reactivation of DNAses in field specimens. Molecular Ecology 8: 681–683
Briggs DEG (1999) Molecular taphonomy of animal and plant cuticles - selective preservation and diagenesis. Philo-sophical Transactions of the Royal Society of London, Series B - Biological Sciences 354: 7–16
Bada JL, Wang XYS, Hamilton H (1999) Preservation of key biomolecules in the fossil record - current knowledge and future challenges. Philosophical Transactions of the Royal Society of London, Series B - Biological Sciences 354: 77–86
Sytsma KJ, Schaal BA (1985) Genetic variation, differentiation, and evolution in a species complex of tropical shrubs based on isozymic data. Evolution 39: 582–593
Dessauer HC, Menzies RA, Fairbrothers DE (1984) Procedures for collecting and preserving tissues for molecular studies. In: HC Dessauer, MS Hafner (eds): Collections of Frozen Tissues: Value, Management, Field and Laboratory Procedures, and Directory of Existing Collections. Association of Systematics Collections, University of Kansas Press, Lawrence, KS, 21–24
Simione FP, Brown EM (1991) ATCC Preservation Methods: Freezing and Freeze-Drying. 2nd Edition. American Type Culture Collection, Rockville, MD
Simione FP (1992) Cryopreservation Manual. Nalge Company, Rochester, NY
Dessauer HC, Hafner MS (1984) Collections of Frozen Tissues: Value, Management, Field and Laboratory Procedures, and Directory of Existing Collections. Association of Systematics Collections, University of Kansas Press, Lawrence, KS
Dessauer HC, Braun MJ, Neville S (1983) A simple hand centrifuge for field use. Isozyme Bulletin 16: 91.
Hay RI, Gee GF (1984) Procedures for collecting cell lines under field conditions. In: HC Dessauer, MS Hafner (eds): Collections of Frozen Tissues: Value, Management, Field and Laboratory Procedures, and Directory of Existing Collections. Association of Systematics Collections, University of Kansas Press, Lawrence, KS, 25–26
Mazur P (1980) Fundamental aspects of the freezing of cells with emphasis on mammalian ova and embryos. In: Pro-ceedings of the Ninth International Congress on Animal Reproduction and Artificial Insemination, 99–114
Gordh G, Hall JC (1979) A critical point drier used as a method of mounting insects from alcohol. Entomological News 90: 57–59
Austin AD, Dillon N (1997) Extraction and PCR of DNA from parasitoid wasps that have been chemically dried. Australian Journal of Entomology 36: 241–244
Logan JA (1999) Extraction, polymerase chain reaction, and sequencing of a 440 base-pair region of the mitochondrial cytochrome oxidase I gene from 2 species of acetone-preserved damselflies (Odonata, Coenagrionidae, Agrionidae) Environmental Entomology 28: 143–147
Post RJ, Flook PK, Millest AL (1993) Methods for the preservation of insects for DNA studies. Biochemical Systematics and Ecology 21: 85–90
Phillips AJ, Simon C (1995) Simple, efficient, and nondestructive DNA extraction protocol for arthropods. Annals of the Entomological Society of America 88: 281–283
Toe L, Back C, Adjami AG, Tang JM et al. (1997) Onchocerca volvulus - Comparison of field collection methods for the preservation of parasite and vector samples for PCR analysis. Bulletin of the World Health Organization 75: 443–447
Makowski GS, Davis EL, Hopfer SM (1997) Amplification of Guthrie card DNA - Effect of guanidine thiocyanate on binding of natural whole-blood PCR inhibitors. Journal of Clinical Laboratory Analysis 11: 87–93
Ostrander EA, Maslen CL, Hallick LM (1987) Recovery of critical DNA samples from laboratory bench paper. Focus 9: 9
McCabe ERB, Huang S-Z, Seltzer WK, Law ML (1987) DNA microextraction from dried blood spots on filter paper blotters: potential application to newborn screening. Human Genetics 75: 213–217
Weisberg EP, Giorda R, Trucco M, Lampasona V (1993) Lyophilization as a method to store samples of whole-blood. BioTechniques 15: 64
Cann RL, Feldman RA, Freed LA, Lum JK et al. (1994) Collection and storage of vertebrate samples. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Methods in Enzymology Vol. 224, Molecular Evolution: Producing the Biochemical Data. Academic Press, San Diego, CA, 38–51
Croat TB (1979) Use of a portable propane gas oven for field drying plants. Taxon 28: 573–580
Hower RO (1979) Freeze-drying Biological Specimens. Smithsonian Institution Press, Washington, DC
Rogers SO, Bendich AJ (1985) Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Molecular Biology 5: 69–76
Hamrick JL, Loveless MD (1986) Isozyme variation in tropical trees: Procedures and preliminary results. Biotropica 18: 201–207
Doyle JJ, Dickson EE (1987) Preservation of plant samples for DNA restriction endonuclease analysis. Taxon 36: 715–722
Pyle MM, Adams RP (1989) In situ preservation of DNA in plant specimens. Taxon 38: 576–581
Tai TH, Tanksley SD (1990) A rapid and inexpensive method for isolation of total DNA from dehydrated plant tissue. Plant Molecular Biology Reporter 8: 297–303
Harris SA (1993) DNA analysis of tropical plant species. An assessment of different drying methods. Plant Systematics and Evolution 188: 57–64
Khadhair AH, Momani F, Hiruki C (1995) Molecular stability of clover proliferation phytoplasma DNA in periwinkle plant tissues after thermal treatment under microwave conditions. Proceedings of The Japan Academy Series B - Physical and Biological Sciences 71: 265–268
Chase M, Hills J (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40: 215–220
Hanlin RT (1972) Preservation of fungi by freeze-drying. Bulletin of the Torrey Botanical Club 99: 23–27
Bolster P (1978) Preserving Flowers with Silica Gel. Canadian Department of Agriculture Publication 1649, Ottawa
Liston A, Rieseberg LH, Adams RP, Do N et al. (1990) A method for collecting dried plant specimen for DNA and isozymes analysis, and the results of a field test in Xinjiang, China. Annals of the Missouri Botanical Garden 77: 859–864
Mellor JD (1978) Fundamentals of Freeze-Drying. Academic Press, New York
Schierenbeck KA (1994) Modified polyethylene-glycol DNA extraction procedure for silica gel-dried tropical woody plants. BioTechniques 16: 392–394
Holzmann M, Pawlowski J (1996) Preservation of Foraminifera for DNA extraction and PCR amplification. Journal of Foraminiferal Research 26: 264–267
Winsor L (1998) Collection, handling, fixation, histological and storage procedures for taxonomic studies of terrestrial flatworms (Tricladida, Terricola). Pedobiologia 42: 405–411
Noguchi M, Furuya S, Takeuchi T, Hirohashi S (1997) Modified formalin and methanol fixation methods for molecular biological and morphological analyses. Pathology International 47: 685–691
Greer CE, Lund JK, Manos MM (1991) PCR amplification from paraffin embedded tissues: recommendations on fixatives for long-term storage and prospective studies. PCR Methods and Applications 1: 46–50
Reiss RA, Schwert DP, Ashworth AC (1995) Field preservation of Coleoptera for molecular genetic analyses. Environmental Entomology 24: 716–719
Taylor WR (1981) Preservation practices: water in tissues, specimen volume, and alcohol concentration. Curation Newsletter 2: 1–3
Masner L (1994) Effect of low temperature on preservation and quality of insect specimens stored in alcohol. Insect Collection News 9: 14–15
Flournoy LE, Adams RP, Pandy RN (1996) Interim and archival preservation of plant specimens in alcohols for DNA Studies. BioTechniques 20: 657–660
Bahl A, Pfenninger M (1996) A rapid method of DNA isolation using laundry detergent. Nucleic Acids Research 24: 1587–1588
Kuch U, Pfenninger M, Bahl A (1999) Laundry detergent effectively preserves amphibian and reptile blood and tissues for DNA isolation. Herpetological Review 30: 80–82
Sansinforiano ME, Padilla JA, Demendoza JH, Demendoza MH et al. (1998) Rapid and easy method to extract and preserve DNA from Cryptococcus neoformans and other pathogenic yeasts. Mycoses 41: 195–198
Nakanishi M, Wilson AC, Nolan RA, Gorman GC et al. (1969) Phenoxyethanol: Protein preservative for taxonomists. Science 163: 681–683
Birungi J, Roy MS, Arctander P (1998) DMSO-preserved samples as a source of messenger RNA for RT-PCR. Molecular Ecology 7: 1429–1430
Quinn T, White, B (1987) Identification of restriction-fragment-length polymorph-isms in genomic DNA of the lesser snow goose (Anser calrulescens calrulescens) Molecular Biology and Evolution 4: 126–143
Lansman RA, Shade RO, Shapira JF, Avise JC (1981) The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. Journal of Molecular Evolution 17: 214–226
Gelhaus A, Urban B, Pirmez C (1995) DNA extraction from urea-preserved blood or blood clots for use in PCR. Trends in Genetics 11: 129–129
Laulier M, Pradier E, Bigot Y, Periquet G (1995) An easy method for preserving nucleic acids in field samples for later molecular and genetic studies without refrigerating. Journal of Evolutionary Biology 8: 657–663
Tuttle RM, Waselenko JK, Yosseffi P, Weigand, N et al. (1998) Preservation of nucleic acids for polymerase chain reaction after prolonged storage at room temperature. Diagnostic Molecular Pathology 7: 302–309
Asahida T, Kobayashi T, Saitoh K, Nakayama I (1997) Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fisheries Science 62: 727–730
Dawson MN, Raskoff KA, Jacobs DK (1998) Field preservation of marine invertebrate tissue for DNA analyses. Molecular Marine Biology and Biotechnology 7: 145–152
Seutin G, White BN, Boag PT (1991) Preservation of avian blood and tissue samples for DNA analyses. Canadian Journal of Zoology 69: 82–90
Nickrent DL (1994) From field to film - Rapid sequencing methods for field-collected plant species. BioTechniques 16: 470
Shubin N, Tabin C, Carroll S (1997) Fossils, genes and the evolution of animal limbs Nature (London) 388: 639–648
Kramer EM, Irish VF (1999) Molecular genetic studies in Arabidopsis thaliana and other higher-eudicot flowering plants have led to the development of the `ABC’ model of the determination of organ identity in flow. Nature (London) 399: 144–148
Eernisse DJ, Kluge AG (1993) Taxonomic congruence versus total evidence, and the phylogeny of amniotes inferred from fossils, molecules and morphology. Molecular Biology and Evolution 10: 1170–1195
Jacobs DK, Wray CG, Wedeen CJ, Kostriken R et al. (2000) Molluscan engrailed expression, serial organization and shell evolution. Evolution and Development 2: 340–347
Wasser SK, Houston CS, Koehler GM, Cadd GG et al. (1997) Techniques for application of fecal DNA methods to field studies of ursids. Molecular Ecology 6: 1091–1097
Frantzen MAJ, Silk JB, Ferguson JWH, Wayne RK et al. (1998) Empirical evaluation of preservation methods for fecal DNA. Molecular Ecology 7: 1423–1428
Shankaranarayanan P, Singh L (1998) A rapid and simplified procedure for isolating DNA from scat samples. Current Science 75: 883–884
Launhardt K, Epplen C, Epplen JT, Winkler P (1998) Amplification of micro-satellites adapted from human systems in fecal DNA of wild Hanuman langurs (Presbytie entellus) Electrophoresis 19: 1356–1361
Dowd SE, Gerba CP, Enriquez FJ, Pepper IL (1998) PCR amplification and species determination of Microsporidia in formalin-fixed feces after immunomagnetic separation. Applied and Environmental Microbiology 64: 333–336
Jannett FJ Jr. (1989) Some tests of synthetic paper and polyethylene sacks for specimens preserved in fluids. Curator 32: 24–25
Blackwell M, Chapman R (1994) Collection and storage of fungal and algal samples. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Methods in Enzymology Vol. 224, Molecular Evolution: Producing the Biochemical Data. Academic Press, San Diego, CA, 65–77
Lee WL, Bell BM, Sutton JF (1982) Guidelines for Acquisition and Management of Biological Specimens. A Report of the participants of a Conference on Voucher Specimen Management sponsored under the auspicies of the Council of Curatorial Methods of the Association of Systematics Collections. Association of Systematics Collections, University of Kansas Press, Lawrence, KS
Williams SL, Hawks CA (1986) Inks for documentation in vertebrate research collections. Curator 29: 93–108
Wood RM, Williams SL (1993) An evaluation of disposable pens for permanent museum records. Curator 36: 189–200
Baker RJ, Hafner MS (1984) Curatorial problems unique to frozen tissue collections. In: HC Dessauer, MS Hafner (eds): Collections of Frozen Tissues: Value, Management, Field and Laboratory Procedures, and Directory of Existing Collections. Association of Systematics Collections, University of Kansas Press, Lawrence, KS, 35–40
Jewett SL (1987) Byron Weston Resistall Ledger and other papers used for labels in aqueous preservatives. Curation Newsletter 9: 1–2
Van Guelpen L, McElman JF, Sulak KJ (1987) Additional label papers for specimens in aqueous preservatives. Curation Newsletter 9: 3–4
Walker S (1986) Investigation of the properties of Tyvek pertaining to its use as a storage material for artifacts. The International Institute for Conservation, Canadian Group Newsletter 12: 21–25
Gisbert J, Palacios F, Garcia-Perea R (1990) Labelling vertebrate collections with Tyvek®synthetic paper. Collection Forum 6: 35–37
Remsen JV Jr. (1977) On taking field notes. American Birds 31: 946–953
Herman SG (1980) The Naturalist’s Field Journal. Buteo Books, Vermillion, SD
Friend M (1987) Field Guide to Wildlife Diseases. U.S. Department of the Interior, Fish and Wildlife Service Resource Publication No. 167, Washington, DC
Jong S-C, Atkins WB (1985) Conservation, collection, and distribution of cultures. In: S-C Jong, WB Atkins, DH Howard (eds) Fungi Pathogenic for Humans and Animals. Marcel Dekker, Inc., New York, 153–194
Cypess RH, Jong S-C (1997) Culture collections for equitable use of microbial germplasm. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 235–244
Staines JE, McGowan VF, Skerman VAD (1986) World Directory of Collections of Cultures of Microorganisms. 3rd Edition. World Data Centre, University of Queensland, Brisbane
Miyachi S, Nakayama 0, Yokohama Y, Hara Y et al. (1989) World Catalogue of Algae. 2nd Edition. Japan Scientific Societies Press, Tokyo
Edwards MJ (1988) Microbes and Cells at Work: An Index to ATCC Strains with Special Applications. American Type Culture Collection, Rockville, MD
Maglott DR, Nierman WC (1991) Catalo- 118 gue of Recombinant DNA Materials. 2nd Edition. American Type Culture Collec-tion, Rockville, MD
Krickevsky MI, Fabricius BO, Sugawara H (1988) Information resources. In: DL Hawksworth, BE Kirsop (eds): Living Re-119 sources for Biotechnology, Filamentous Fungi. Cambridge University Press, New York, 31–53
Starr RC, Zeikus JA (1993) The Culture Collection of Algae at The University of 120 Texas at Austin: 1993 list of cultures. Journal of Phycology 29 (suppl.): 1–106
Gardes M, White TJ, Fortin JA, Bruns TD et al. (1991) Indentification of 8 indigen-ous and introduced fungi in mycorrhizae 121 by amplification of internal transcribed spacer. Canadian Journal of Botany 69: 180–190
Lee SB, Taylor JW (1990) Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds): PCR Proto-cols: A Guide to Methods and Applications. Academic Press, San Diego, CA, 282–287.
Bold HC, Wynne MJ (1985) Introduction to the Algae. Prentice-Hall, Englewood Cliffs, NJ
Shands HL, Stoner AK (1997) Agricul-tural germplasm and global contribu- 123 tions. In: KE Hoagland, AY Rossman(eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 97–106
Hawtin G, Engels J, Siebeck W (1997) International germplasm collections un-der the Biodiversity Convention - Op- 124 tions for a continued multilateral exchange of genetic resources for food and agriculture. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Sym- 125 posia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 247–262
Henderson DM, Prentice HT (1977) International Directory of Botanical Gardens. Regnum Vegetabile. Vol. 95. International Bureau for Plant Taxonomy and Nomenclature, Utrecht, The Nether-lands
Raven PH, Johnson GB, Zenger VE (1986) Instructor’s Manual to Accompany Raven and Johnson Biology. Times Mirror/Mosby College Publ., St. Louis, MO, 33
Connor KF, Towill LE (1993) Pollenhandling protocol and hydration-dehydration characteristics of pollen for application to long-term storage. Euphytica 68: 77–84
Dessauer HC, Hafner MS, Zink RM (1988) A national program to develop, maintain and utilize frozen tissue collections for scientific research. Association of Systematics Collections Newsletter 16: 3–10
Sheldon FM, Dittmann DL (1997) The value of vertebrate tissue collections in applied and basic science. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 151–162
Baker R, Hager B, Monk R (1999) Issues concerning loan policies for destructive analysis of museum based frozen tissue and DNA samples. (Abstract). In: Proceedings of Society for the Preservation of Natural History Collections, 14th Annual Meeting, June 27–2 July 1999. National Museum of Natural History, Smithsonian Institution, Washington, DC, 20
Thomas WK, Pääbo S, Villablanca FX, Wilson AC (1990) Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. Journal of Molecular Evolution 31: 101–112
Hagelberg E, Sykes B, Hedges R (1989) Ancient bone DNA amplified. Nature (London) 342: 485–486
Lee HC, Pagliaro EM, Berka KM, Folk NL et al. (1991) Genetic markers in human bones: DNA analysis. Journal of Forensic Science 36: 320–326.
Tuross N, Stathoplos L (1994) Ancient proteins in fossil bones. In: EA Zimmer, TJ White, RL Cann, AC Wilson (eds): Methods in Enzymology Vol. 224, Molecular Evolution: Producing the Biochemical Data. Academic Press, San Diego, CA, 121–129
Simpson TA, Smith RJH (1995) Amplification of mitochondrial DNA from archival temporal bone specimens. Laryngoscope 105: 28–34
Koshiba M, Ogawa K, Hamazaki S, Sugiyama T et al. (1993) The effect of for-malin fixation on DNA and the extraction of high molecular weight DNA from fixed and embedded tissues. Pathology Research and Practice 189: 66–72
Savioz A, Blouin JL, Guidi S, Antonarakis SE et al. (1997) A method for the extraction of genomic DNA from human brain tissue fixed and stored in formalin for many years. Acta Neuropathologica 93: 408–413
Waller R, McAllister DE (1986) A spot test for distinguishing formalin from alcohol solutions. In: J Waddington, DM Rudkin (eds): Proceedings of the 1985 Workshop on Care and Maintenance of Natural History Collections. Life Sciences Miscellaneous Publications of the Royal Ontario Museum, Toronto, 93–99
Moore SJ (1994) What fluid is in this bottle? Biology Curators’ Group Newsletter 6: 44–45
Criscuolo G (1992) Extraction and amplification of DNA from wet museum collections. Ancient DNA Newsletter 1: 12–13
Criscuolo G (1994) On the state of preservation of DNA from museum spirit collections. Biology Curators’ Group Newsletter 6: 39–41
Bulat SA, Zakharov IA (1992) Identification of DNA in the material of entomological collections by means of polymerase chain reaction. Zhurnal Obshchei Biologii 53: 861–863
Rollo F, La Marca A, Amici A (1987) Nucleic acids in mummified plant seeds: screening of twelve specimens by gel-electrophoresis, molecular hybridization and DNA cloning. Theoretical and Applied Genetics 73: 501–505
Golenberg EM, Giannasi DE, Clegg MT, Smiley CJ et al. (1990) Chloroplast DNA sequence from a Miocene Magnolia species. Nature (London) 344: 656–658
Golenberg EM (1994) Antediluvian DNA research. Nature (London) 367: 692–692
Bruns TD, Fogel R, Taylor JW (1990) Amplification and sequencing from fungal herbarium specimens. Mycologia 82: 175–184
Swann EC, Saenz GS, Taylor JW (1991) Maximizing information content of morphological specimens: Herbaria as sources of DNA for molecular systematics. (Abstract). Mycological Society of America Newsletter 42: 36
Goff LJ, Moon DA (1993) PCR amplification of nuclear and plastid genes from algal herbarium specimens and algal spores. Journal of Phycology 29: 381–384
Douglas MP, Rogers SO (1998) DNA damage caused by common cytological fixatives. Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis 401: 77–88
Young DJ, Gilbertson RL, Alcorn SM (1982) A new record for longevity of Macrophomina phaseolina sclerotia soil-inhabiting fungi. Mycologia 74: 504–505
Shibata DK, Arnhem N, Martin WJ (1988) Detection of human papilloma virus in paraffin-embedded tissue using the polymerase chain reaction. Journal of Experimental Medicine 167: 225–230
Crisan D, Mattson JC (1993) Retrospective DNA analysis using fixed tissue specimens. DNA and Cell Biology 12: 455–464
Iwamoto KS, Mizuno T, Ito T, Akiyama M et al. (1996) Feasibility of using decades-old archival tissues in molecular oncology/epidemiology. American Journal of Pathology 149: 399–406
McEwen JE, Reilly PR (1994) Stored Guthrie cards as DNA banks American Journal of Human Genetics 55: 196–200
Visvikis S, Schlenck A, Maurice M (1998) DNA extraction and stability for epidemiologic studies. Clinical Chemistry and Laboratory Medicine 36: 551–555
Frank TS, Svobodanewman SM, His ED (1996) Comparison of methods for extracting DNA from formalin-fixed paraffin sections for nonisotopic PCR. Diagnostic Molecular Pathology 5: 220–224
Morgan K, Lam L, Kalsheker N (1996) A rapid and efficient method for DNA extraction from paraffin wax embedded tissue for PCR amplification. Journal of Clinical Pathology - Clinical Molecular Pathology Edition 49: M179–M180
Pavelic J, Galltroselj K, Bosnar MH, Kardum MM et al. (1996) PCR amplification of DNA from archival specimens - A methodological approach. Neoplasma 43: 75–81
Sabrosky CW (1971) Packing and shipping pinned insects. Bulletin of the Entomological Society of America 17: 6–8
Piegler RS (1992) Shipping of pinned insects. Collection Forum 8: 73–77
McCoy CJ (1993) Packing fluid-preserved herpetological specimens for shipment. Collection Forum 9: 70–75
Mikoliczeak J, Stephens M, Simione FP Jr. (1987) Comparison of -130°C mechanical refrigeration with liquid nitrogen storage for biological specimens. SIM News 37: 74
Naber SP (1996) Continuing role of a frozen-tissue bank in molecular pathology. Diagnostic Molecular Pathology 5: 253–259
Jong S-C (1978) Conservation of the cultures. In: ST Chang, WA Hay (eds): The Biology and Cultivation of Edible Mushrooms. Academic Press, London, 119–135
Smith D (1988) Culture and preservation. In: DL Hawksworth, BE Kirsop (eds): Living Resources for Biotechnology, Filamentous Fungi. Cambridge University Press, New York, 75–99
Palmer WM (1974) Inexpensive jars for museum specimens. Curator 17: 321–324
Legler JM (1981) Inexpensive containers for large herpetological specimens. Herpetological Review 12: 9–10
De Moor FC (1990) Containers for wet collections - problems and solutions. In: EM Herholdt (ed): Natural History Collections: Their Management and Value. Transvaal Museum Special Publication No. 1, Transvaal Museum, Pretoria, 27–36
Hoebeke ER (1985) A unit storage system for fluid-preserved arthropods. Curator 28: 77–83
Holm-Hansen O (1973) Preservation by freezing and freeze-drying. In: R Stein (ed): Handbook of Phycological Methods: Culture Methods and Growth Measurements. Cambridge University Press, New York, 195–206
Jong S-C (1989) Microbial germplasm. In: L Knutson, AK Stoner (eds): Biotic Diversity and Germplasm Preservation, Global Imperatives. Kluwer Academic Publishers, Dordrecht, The Netherlands, 241–273
Stein JR (1973) Handbook of Phycological Methods: Culture Methods and Growth Measurements. Cambridge University Press, New York
Hall GS, Hawksworth DL (1990) International Mycological Directory. 2nd Edition. International Mycological Association, CAB International Mycological Institute, Oxon, UK
Arnett RH Jr., Samuelson GA (1986) The Insect and Spider Collections of the World. Fauna and Flora Publications, Gainesville, FL
Voss G. L (1976) Seashore Life of Florida and the Caribbean. E.A. Seamann Publishing, Miami, FL
Bland RG, Jaques HE (1978) How to Know the Insects. W. C. Brown, Dubuque, IO
Meinkoth NA (1981) The Audubon Society Field Guide to North American Seashore Creatures. Alfred A. Knopf, New York
Schultz GA (1969) How to Know the Marine Isopod Crustaceans. W.C. Brown, Dubuque, IO
Hayward PJ (1985) Ctenostome Bryozoans. Synopses of the British Fauna (New Series) No. 33. E.J. Brill, London
Sims RW (1980) Animal Identification, A Reference Guide; Vol. 1, Marine and Brackish Water Animals; Vol. 2, Land and Freshwater Animals (not Insects); Vol. 3, Insects. British Museum (Natural History), London, and Wiley, Chichester
Huber JT (1998) The importance of voucher specimens, with practical guidelines for preserving specimens of the major invertebrate phyla for identification. Journal of Natural History 32: 367–385
Meester J (1990) The importance of retaining voucher specimens. In: EM Herholdt (ed): Natural History Collections: Their Management and Value. Transvaal Museum Special Publication No. 1, Transvaal Museum, Pretoria, 123–127
Robinson WH (1975) Taxonomic responsibilities of non-taxonomists. Bulletin of the Entomological Society of America 21: 157–159
Yates TL (1985) The role of voucher specimens in mammal collections: characterization and funding responsibilities. Acta Zoologica Fennica 170: 81–82
Dingerkus G (1982) Preliminary observations on acidification of alcohol in museum specimen jars. Curation Newsletter 5: 1–3
Tucker JW, Chester AJ (1984) Effects of salinity, formalin concentration, and buffer on quality and preservation of southern flounder (Paralilchthys lethostigma) larvae. Copeia 4: 981–988
Hughes GW, Cosgrove JA (1990) pH change in a formalin borax solution with inferences about uses of neutralized formalin in vertebrate collections. Collection Forum 6: 21–26
Owen G (1955) Use of propylene phenoxetol as a relaxing agent. Nature (London) 175: 434
Hardwick DF (1950) Preparation of slide mounts of lepidopterous genitalia. Canadian Entomologist 82: 231–235
Turner RD (1960) Mounting minute radulae. The Nautilus 73: 135–137
Gurney AB, Kramer JP, Steyskal GC (1964) Some techniques for the preparation, study, and storage in microvials of insect genitalia. Annals of the Entomological Society of America 57: 240–242
Smith EH (1979) Techniques for the dissection and mounting of the male (aedeagus) and female (spermatheca) genitalia of the Chrysomelidae (Coleoptera) Coleopterists Bulletin 33: 93–103
Mueller GJ (1972) Field Preparation of Marine Specimens. University of Alaska Museum, Fairbanks, AK
Lincoln RJ, Sheals JB (1979) Invertebrate Animals: Collection and Preservation. Cambridge University Press, Cambridge, UK
Hall ER (1962) Collecting and preparing study specimens of vertebrates. University of Kansas Museum of Natural History Miscellaneous Publication 30: 1–46
Wagstaffe R, Fidler JH (1968) Preservation of Natural History Specimens, Vol. 2: Zoology/Vertebrates. H.F. & G. Witherby Ltd., London
Savile DBO (1962) Collection and Care of Botanical Specimens. Canadian Department of Agriculture Publication 1113, Ottawa
Ketchledge EH (1970) Plant Collecting: A Guide to the Preparation of a Plant Collection. State University College of Forestry at Syracuse University, Syracuse, NY
Smith CE (1971) Preparing Herbarium Specimens of Vascular Plants. United States Department of Agriculture Information Bulletin 348, Washington, DC
Harris RH (1990) Zoological preservation and conservation techniques. Journal of Biological Conservation 1: 4–68
Knudsen JW (1972) Collecting and Preserving Plants and Animals. Harper and Row, New York
Herholdt EM (1990) Natural History Collections: Their Management and Value. Transvaal Museum Special Publication No. 1, Transvaal Museum, Pretoria
Stansfield G, Mathias J, Reid G (1994) Manual of Natural History Curatorship. Her Majesty’s Stationery Office, London
Woodward SM, Hlywka WE (1993) A database for frozen tissues and karyotype slides. Collection Forum 9: 76–83
Zaldumbide K, Boulukos E, Pognonec P (2000) Virtual nitrogen tank to monitor frozen cell stocks. BioTechniques 29:122–126
McAllister DE, Murphy R, Morrison J (1978) The compleat minicomputer cataloging and research system for a museum. Curator 21: 63–91
Arnold TH (1990) Computerization of the curatorial and service functions of the National Herbarium, Pretoria. In: EM Herholdt (ed): Natural History Collections: Their Management and Value. Transvaal Museum Special Publication No. 1, Transvaal Museum, Pretoria, 81–87
Wingate LR (1990) Microcomputer use for mammal collection management at the Kaffrarian Museum. In: EM Herholdt (ed): Natural History Collections: Their Management and Value. Transvaal Museum Special Publication No. 1, Transvaal Museum, Pretoria, 89–104
Owen RD (1990) Database computerization and consortium development for vertebrate collections - a collection management perspective. In: EM Herholdt (ed): Natural History Collections: Their Management and Value. Transvaal Museum Special Publication No. 1, Transvaal Museum, Pretoria, 105–116
Lesser WH (1997) International treaties and other legal and economic issues relating to the ownership and use of genetic resources. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 31–50
Stenson AJ, Gray TS (1999) The Politics of Genetic Resource control. St. Martins Press, London
Hoagland KE (1997) Access to specimens and genetic resources: an Associa-tion of Systematics Collections position paper. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 317–330
Holden C (1992) NSF bombs in ice capade. Science 255: 406.
Nicholson TD (1976) Systematics collec-tions and the law. Curator 19: 21–28
Williams SL, Laubach R, Genoways HH (1977) A guide to the management of recent mammal collections. Carnegie Museum of Natural History, Special Publication 4: 1–105
Cato PS (1993) Institution-wide policy for sampling. Collection Forum 9: 27–39
Merritt E (1992) Conditions on outgoing research loans. Collection Forum 8: 78–82
Cato PS, Williams SL (1993) Guidelines for developing policies for the management and care of natural history collections. Collection Forum 9: 84–107
Hoagland KE (1994) Guidelines for Institutional Policies and Planning in Natural History Collections. Association of Systematics Collections, Washington, DC
Reid W (1997) Regulating the biotrade to promote the conservation and sustainable use of biodiversity. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 303–315
Oring L, Able KP, Anderson DW, Baptista LF et al. (1988) Ad Hoc Committee on the Use of Wild Birds in Research, Report of the American Ornithologists’ Union, Cooper Ornithological Society, Wilson Ornithological Society, Supplement to Auk 105
Baker S, Palumbi S (1994) Which whales are hunted? A molecular approach to monitoring whaling. Science 265: 1538–1539
Echandi CMR (1997) Biodiversity, research agreements, intellectual and other property rights: the Costa Rican case. In: KE Hoagland, AY Rossman (eds): Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC, 213–218
Hoagland KE, Rossman AY (1997) Global Genetic Resources: Access, Ownership, and Intellectual Property Rights. Beltsville Symposia in Agricultural Research 21. Association of Systematics Collections, Washington, DC
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Prendini, L., Hanner, R., DeSalle, R. (2002). Obtaining, Storing and Archiving Specimens and Tissue Samples for Use in Molecular Studies. In: DeSalle, R., Giribet, G., Wheeler, W. (eds) Techniques in Molecular Systematics and Evolution. Methods and Tools in Biosciences and Medicine. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-8125-8_11
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