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StructuRegNet: Structure-Guided Multimodal 2D-3D Registration

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Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 (MICCAI 2023)

Abstract

Multimodal 2D-3D co-registration is a challenging problem with numerous clinical applications, including improved diagnosis, radiation therapy, or interventional radiology. In this paper, we present StructuRegNet, a deep-learning framework that addresses this problem with three novel contributions. First, we combine a 2D-3D deformable registration network with an adversarial modality translation module, allowing each block to benefit from the signal of the other. Second, we solve the initialization challenge for 2D-3D registration by leveraging tissue structure through cascaded rigid areas guidance and distance field regularization. Third, StructuRegNet handles out-of-plane deformation without requiring any 3D reconstruction thanks to a recursive plane selection. We evaluate the quantitative performance of StructuRegNet for head and neck cancer between 3D CT scans and 2D histopathological slides, enabling pixel-wise mapping of low-quality radiologic imaging to gold-standard tumor extent and bringing biological insights toward homogenized clinical guidelines. Additionally, our method can be used in radiation therapy by mapping 3D planning CT into the 2D MR frame of the treatment day for accurate positioning and dose delivery. Our framework demonstrates superior results to traditional methods for both applications. It is versatile to different locations or magnitudes of deformation and can serve as a backbone for any relevant clinical context.

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References

  1. Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J., Dalca, A.V.: VoxelMorph: a learning framework for deformable medical image registration. IEEE Trans. Med. Imaging 38(8), 1788–1800 (2019). https://doi.org/10.1109/TMI.2019.2897538

    Article  Google Scholar 

  2. Caldas-Magalhaes, J., et al.: The accuracy of target delineation in laryngeal and hypopharyngeal cancer. Acta Oncologica 54(8), 1181–1187 (2015). https://doi.org/10.3109/0284186X.2015.1006401

  3. Chappelow, J., et al.: Elastic registration of multimodal prostate MRI and histology via multiattribute combined mutual information. Med. Phys. 38(4), 2005–2018 (2011). https://doi.org/10.1118/1.3560879

    Article  Google Scholar 

  4. Ferrante, E., Paragios, N.: Slice-to-volume medical image registration: a survey. Med. Image Anal. 39, 101–123 (2017). https://doi.org/10.1016/j.media.2017.04.010

    Article  Google Scholar 

  5. Geets, X., et al.: Inter-observer variability in the delineation of pharyngo-laryngeal tumor, parotid glands and cervical spinal cord: comparison between CT-scan and MRI. Radiother. Oncol.: J. Eur. Soc. Ther. Radiol. Oncol. 77(1), 25–31 (2005). https://doi.org/10.1016/j.radonc.2005.04.010

    Article  Google Scholar 

  6. Guo, H., Xu, X., Xu, S., Wood, B.J., Yan, P.: End-to-end ultrasound frame to volume registration (2021)

    Google Scholar 

  7. Heinrich, M.P., et al.: MIND: modality independent neighbourhood descriptor for multi-modal deformable registration. Med. Image Anal. 16(7), 1423–1435 (2012). https://doi.org/10.1016/j.media.2012.05.008

    Article  Google Scholar 

  8. Jaganathan, S., Wang, J., Borsdorf, A., Shetty, K., Maier, A.: Deep iterative 2D/3D registration. arXiv:2107.10004 [cs, eess], vol. 12904, pp. 383–392 (2021). https://doi.org/10.1007/978-3-030-87202-1_37

  9. Jager, E.A., et al.: Interobserver variation among pathologists for delineation of tumor on H &E-sections of laryngeal and hypopharyngeal carcinoma. How good is the gold standard? Acta Oncologica 55(3), 391–395 (2016). https://doi.org/10.3109/0284186X.2015.1049661

    Article  Google Scholar 

  10. Kimm, S.Y., et al.: Methods for registration of magnetic resonance images of ex vivo prostate specimens with histology. J. Magn. Reson. Imaging 36(1), 206–212 (2012)

    Article  Google Scholar 

  11. Kuckertz, S., Papenberg, N., Honegger, J., Morgas, T., Haas, B., Heldmann, S.: Learning deformable image registration with structure guidance constraints for adaptive radiotherapy. In: Špiclin, Ž, McClelland, J., Kybic, J., Goksel, O. (eds.) WBIR 2020. LNCS, vol. 12120, pp. 44–53. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-50120-4_5

    Chapter  Google Scholar 

  12. Lee, M.C.H., Oktay, O., Schuh, A., Schaap, M., Glocker, B.: Image-and-spatial transformer networks for structure-guided image registration (2019). https://doi.org/10.48550/arXiv.1907.09200

  13. Leroy, A., et al.: MO-0476 statistical discrepancies in GTV delineation for H &N cancer across expert centers. Radiother. Oncol. 170, S426–S427 (2022). https://doi.org/10.1016/S0167-8140(22)02370-2

    Article  Google Scholar 

  14. Leroy, A., et al.: End-to-end multi-slice-to-volume concurrent registration and multimodal generation. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) MICCAI 2022. LNCS, pp. 152–162. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16446-0_15

    Chapter  Google Scholar 

  15. Li, L., et al.: Co-registration of ex vivo surgical histopathology and in vivo T2 weighted MRI of the prostate via multi-scale spectral embedding representation. Sci. Rep. 7(1), 8717 (2017). https://doi.org/10.1038/s41598-017-08969-w

    Article  MathSciNet  Google Scholar 

  16. Markova, V., Ronchetti, M., Wein, W., Zettinig, O., Prevost, R.: Global multi-modal 2D/3D registration via local descriptors learning (2022)

    Google Scholar 

  17. Njeh, C.F.: Tumor delineation: the weakest link in the search for accuracy in radiotherapy. J. Med. Phys./Assoc. Med. Physicists India 33(4), 136–140 (2008). https://doi.org/10.4103/0971-6203.44472

    Article  Google Scholar 

  18. Ohnishi, T., et al.: Deformable image registration between pathological images and MR image via an optical macro image. Pathol. Res. Pract. 212(10), 927–936 (2016). https://doi.org/10.1016/j.prp.2016.07.018

    Article  Google Scholar 

  19. Rusu, M., et al.: Registration of presurgical MRI and histopathology images from radical prostatectomy via RAPSODI. Med. Phys. 47(9), 4177–4188 (2020)

    Article  Google Scholar 

  20. Shao, W., et al.: ProsRegNet: a deep learning framework for registration of MRI and histopathology images of the prostate. arXiv:2012.00991 [eess] (2020)

  21. Tian, L., Lee, Y.Z., Estépar, R.S.J., Niethammer, M.: LiftReg: limited angle 2D/3D deformable registration (2023)

    Google Scholar 

  22. Ward, A.D., et al.: Prostate: registration of digital histopathologic images to in vivo MR images acquired by using endorectal receive coil. Radiology 263(3), 856–864 (2012). https://doi.org/10.1148/radiol.12102294

    Article  Google Scholar 

  23. Xiao, G., et al.: Determining histology-MRI slice correspondences for defining MRI-based disease signatures of prostate cancer. Comput. Med. Imaging Graph. 35(7), 568–578 (2011). https://doi.org/10.1016/j.compmedimag.2010.12.003

    Article  Google Scholar 

  24. Xu, Z., et al.: Adversarial uni- and multi-modal stream networks for multimodal image registration. arXiv:2007.02790 [cs, eess] (2020)

  25. Zhu, J.Y., Park, T., Isola, P., Efros, A.A.: Unpaired image-to-image translation using cycle-consistent adversarial networks. arXiv:1703.10593 [cs] (2020)

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Correspondence to Amaury Leroy .

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Leroy, A. et al. (2023). StructuRegNet: Structure-Guided Multimodal 2D-3D Registration. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14229. Springer, Cham. https://doi.org/10.1007/978-3-031-43999-5_73

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  • DOI: https://doi.org/10.1007/978-3-031-43999-5_73

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