Skip to main content

DeDA: Deep Directed Accumulator

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 (MICCAI 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14221))

  • 3556 Accesses

Abstract

Chronic active multiple sclerosis lesions, also referred to as rim+ lesions, are characterized by a hyperintense rim observed at the lesion’s edge on quantitative susceptibility maps. Despite their geometrically simple structure, characterized by radially oriented gradients at the lesion edge with a greater gradient magnitude compared to non-rim+ (rim-) lesions, recent studies indicate that the identification performance for these lesions is subpar due to limited data and significant class imbalance. In this paper, we propose a simple yet effective image processing operation, deep directed accumulator (DeDA), which provides a new perspective for injecting domain-specific inductive biases (priors) into neural networks for rim+ lesion identification. Given a feature map and a set of sampling grids, DeDA creates and quantizes an accumulator space into finite intervals and accumulates corresponding feature values. This DeDA operation can be regarded as a symmetric operation to the grid sampling within the forward-backward neural network framework, the process of which is order-agnostic, and can be efficiently implemented with the native CUDA programming. Experimental results on a dataset with 177 rim+ and 3986 rim- lesions show that \(10.1\%\) of improvement in a partial (false positive rate \(<0.1\)) area under the receiver operating characteristic curve (pROC AUC) and \(10.2\%\) of improvement in an area under the precision recall curve (PR AUC) can be achieved respectively comparing to other state-of-the-art methods. The source code is available online at https://github.com/tinymilky/DeDA.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Absinta, M., et al.: Seven-tesla phase imaging of acute multiple sclerosis lesions: a new window into the inflammatory process. Ann. Neurol. 74(5), 669–678 (2013)

    Article  Google Scholar 

  2. Absinta, M., et al.: Persistent 7-tesla phase rim predicts poor outcome in new multiple sclerosis patient lesions. J. Clin. Investig. 126(7), 2597–2609 (2016)

    Article  Google Scholar 

  3. Ballard, D.H.: Generalizing the Hough transform to detect arbitrary shapes. Pattern Recogn. 13(2), 111–122 (1981)

    Article  MATH  Google Scholar 

  4. Barquero, G., et al.: RimNet: a deep 3D multimodal MRI architecture for paramagnetic rim lesion assessment in multiple sclerosis. NeuroImage Clinical 28, 102412 (2020)

    Google Scholar 

  5. Chen, Jiawen, Paris, Sylvain, Durand, Frédo.: Real-time edge-aware image processing with the bilateral grid. ACM Trans. Graph. 26(3), 103 (2007). https://doi.org/10.1145/1276377.1276506

    Article  Google Scholar 

  6. Dal-Bianco, A., et al.: Slow expansion of multiple sclerosis iron rim lesions: pathology and 7 t magnetic resonance imaging. Acta Neuropathol. 133(1), 25–42 (2017)

    Article  Google Scholar 

  7. De Rochefort, L., et al.: Quantitative susceptibility map reconstruction from MR phase data using Bayesian regularization: validation and application to brain imaging. Magn. Reson. Med. Official J. Int. Soc. Magn. Reson. Med. 63(1), 194–206 (2010)

    Article  Google Scholar 

  8. Dosovitskiy, A., et al.: An image is worth 16 \(\times \) 16 words: transformers for image recognition at scale. In: International Conference on Learning Representations (2020)

    Google Scholar 

  9. Gillen, K.M., et al.: QSM is an imaging biomarker for chronic glial activation in multiple sclerosis lesions. Ann. Clin. Transl. Neurol. 8(4), 877–886 (2021)

    Google Scholar 

  10. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  11. Ioffe, S., Szegedy, C.: Batch normalization: accelerating deep network training by reducing internal covariate shift. In: International Conference on Machine Learning, pp. 448–456. PMLR (2015)

    Google Scholar 

  12. Jaderberg, M., Simonyan, K., Zisserman, A., et al.: Spatial transformer networks. In: Advances in Neural Information Processing Systems, vol. 28 (2015)

    Google Scholar 

  13. Kamnitsas, K., et al.: Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation. Med. Image Anal. 36, 61–78 (2017)

    Article  Google Scholar 

  14. Kaunzner, U.W., et al.: Quantitative susceptibility mapping identifies inflammation in a subset of chronic multiple sclerosis lesions. Brain 142(1), 133–145 (2019)

    Article  Google Scholar 

  15. Kayhan, O.S., Gemert, J.C.V.: On translation invariance in CNNs: convolutional layers can exploit absolute spatial location. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 14274–14285 (2020)

    Google Scholar 

  16. Lenc, K., Vedaldi, A.: Understanding image representations by measuring their equivariance and equivalence. In: Proceedings of the IEEE Conference On Computer Vision and Pattern Recognition, pp. 991–999 (2015)

    Google Scholar 

  17. Liu, Z., et al.: Swin transformer: hierarchical vision transformer using shifted windows. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 10012–10022 (2021)

    Google Scholar 

  18. Lou, C., et al.: Fully automated detection of paramagnetic rims in multiple sclerosis lesions on 3t susceptibility-based MR imaging. NeuroImage Clin. 32, 102796 (2021)

    Google Scholar 

  19. Matsoukas, C., Haslum, J.F., Sorkhei, M., Söderberg, M., Smith, K.: What makes transfer learning work for medical images: feature reuse and other factors. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 9225–9234 (2022)

    Google Scholar 

  20. Muckley, M., et al.: Results of the 2020 fastMRI challenge for machine learning MR image reconstruction. IEEE Trans. Med. Imaging 40(9), 2306–2317 (2021)

    Article  Google Scholar 

  21. Shi, T., Boutry, N., Xu, Y., Géraud, T.: Local intensity order transformation for robust curvilinear object segmentation. IEEE Trans. Image Process. 31, 2557–2569 (2022)

    Article  Google Scholar 

  22. Wang, Y., Liu, T.: Quantitative susceptibility mapping (QSM): decoding MRI data for a tissue magnetic biomarker. Magn. Reson. Med. 73(1), 82–101 (2015)

    Article  MathSciNet  Google Scholar 

  23. Zhang, H., Hu, R., Chen, X., Wang, R., Zhang, J., Li, J.: DAGrid: directed accumulator grid. arXiv preprint arXiv:2306.02589 (2023)

  24. Zhang, H., et al.: QSMRim-Net: imbalance-aware learning for identification of chronic active multiple sclerosis lesions on quantitative susceptibility maps. NeuroImage Clin. 34, 102979 (2022)

    Google Scholar 

  25. Zhang, H., et al.: ALL-Net: anatomical information lesion-wise loss function integrated into neural network for multiple sclerosis lesion segmentation. NeuroImage Clin. 32, 102854 (2021)

    Google Scholar 

  26. Zhang, H., et al.: Geometric loss for deep multiple sclerosis lesion segmentation. In: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), pp. 24–28. IEEE (2021)

    Google Scholar 

  27. Zhang, H., et al.: Efficient folded attention for medical image reconstruction and segmentation. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 35, pp. 10868–10876 (2021)

    Google Scholar 

  28. Zhang, Z., Zhang, H., Zhao, L., Chen, T., Arik, S.Ö., Pfister, T.: Nested hierarchical transformer: towards accurate, data-efficient and interpretable visual understanding. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 36, pp. 3417–3425 (2022)

    Google Scholar 

Download references

Acknowledgement

The database was approved by the local Institutional Review Board and written informed consent was obtained from all patients prior to their entry into the database. We would like to thank folks from Weill Cornell for sharing the data used in this paper.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hang Zhang .

Editor information

Editors and Affiliations

1 Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (pdf 212 KB)

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Zhang, H., Wang, R., Hu, R., Zhang, J., Li, J. (2023). DeDA: Deep Directed Accumulator. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14221. Springer, Cham. https://doi.org/10.1007/978-3-031-43895-0_72

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-43895-0_72

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-43894-3

  • Online ISBN: 978-3-031-43895-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics