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Clostridioides difficile Biofilm

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Updates on Clostridioides difficile in Europe

Part of the book series: Advances in Experimental Medicine and Biology ((AMIDPH,volume 1435))

Abstract

Clostridioides difficile infection (CDI), previously Clostridium difficile infection, is a symptomatic infection of the large intestine caused by the spore-forming anaerobic, gram-positive bacterium Clostridioides difficile. CDI is an important healthcare-associated disease worldwide, characterized by high levels of recurrence, morbidity, and mortality. CDI is observed at a higher rate in immunocompromised patients after antimicrobial therapy, with antibiotics disrupting the commensal microbiota and promoting C. difficile colonization of the gastrointestinal tract.

A rise in clinical isolates resistant to multiple antibiotics and the reduced susceptibility to the most commonly used antibiotic molecules have made the treatment of CDI more complicated, allowing the persistence of C. difficile in the intestinal environment.

Gut colonization and biofilm formation have been suggested to contribute to the pathogenesis and persistence of C. difficile. In fact, biofilm growth is considered as a serious threat because of the related antimicrobial tolerance that makes antibiotic therapy often ineffective. This is the reason why the involvement of C. difficile biofilm in the pathogenesis and recurrence of CDI is attracting more and more interest, and the mechanisms underlying biofilm formation of C. difficile as well as the role of biofilm in CDI are increasingly being studied by researchers in the field.

Findings on C. difficile biofilm, possible implications in CDI pathogenesis and treatment, efficacy of currently available antibiotics in treating biofilm-forming C. difficile strains, and some antimicrobial alternatives under investigation will be discussed here.

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References

  • AbdelKhalek A, Ashby CR Jr, Patel BA, Talele TT, Seleem MN (2016) In vitro antibacterial activity of rhodanine derivatives against pathogenic clinical isolates. PLoS ONE 11(10):e0164227

    Article  PubMed  PubMed Central  Google Scholar 

  • Aldridge P, Paul R, Goymer P et al (2003) Role of the GGDEF regulator PleD in polar development of Caulobacter crescentus. Mol Microbiol 47:1695–1708

    Article  CAS  PubMed  Google Scholar 

  • Aleksić A, Stojanović-Radić Z, Harmanus C et al (2022) In vitro anti-clostridial action and potential of the spice herbs essential oils to prevent biofilm formation of hypervirulent Clostridioides difficile strains isolated from hospitalized patients with CDI. Anaerobe 76:102604

    Article  PubMed  Google Scholar 

  • Al-Hinai MA, Jones SW, Papoutsakis ET (2015) The Clostridium sporulation programs: diversity and preservation of endospore differentiation. Microbiol Mol Biol Rev 79:19–37

    Article  PubMed  PubMed Central  Google Scholar 

  • Arato V, Gasperini G, Giusti F et al (2019) Dual role of the colonization factor CD2831 in Clostridium difficile pathogenesis. Sci Rep 9:5554

    Article  PubMed  PubMed Central  Google Scholar 

  • Awad MM, Johanesen PA, Carter GP et al (2014) Clostridium difficile virulence factors: Insights into an anaerobic spore-forming pathogen. Gut Microbes 5:579–593

    Article  PubMed  PubMed Central  Google Scholar 

  • Azeredo J, Sutherland IW (2008) The use of phages for the removal of infectious biofilms. Curr Pharm Biotechnol 9:261–266

    Article  CAS  PubMed  Google Scholar 

  • Azriel S, Goren A, Rahav G et al (2015) The stringent response regulator DksA is required for Salmonella enteric Serovar Typhimurium growth in minimal medium, motility, biofilm formation, and intestinal colonization. Infect Immun 84:375–384

    Article  PubMed  PubMed Central  Google Scholar 

  • Badet C, Quero F (2011) The in vitro effect of manuka honeys on growth and adherence of oral bacteria. Anaerobe 17:19–22

    Article  CAS  PubMed  Google Scholar 

  • Barbut F, Richard A, Hamadi K et al (2000) Epidemiology of recurrences or reinfections of Clostridium difficile-associated diarrhea. J Clin Microbiol 38:2386–2388

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Biazzo M, Cioncada R, Fiaschi L et al (2013) Diversity of cwp loci in clinical isolates of Clostridium difficile. J Med Microbiol 62:1444–1452

    Article  CAS  PubMed  Google Scholar 

  • Bordeleau E, Fortier LC, Malouin F et al (2011) c-di-GMP turn-over in Clostridium difficile is controlled by a plethora of diguanylatecyclases and phosphodiesterases. PLoS Genet 7:e1002039

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bordeleau E, Purcell EB, Lafontaine DA et al (2015) Cyclic di-GMP riboswitch-regulated type IV pili contribute to aggregation of Clostridium difficile. J Bacteriol 197:819–832

    Article  PubMed  PubMed Central  Google Scholar 

  • Boudry P, Gracia C, Monot M et al (2014) Pleiotropic role of the RNA chaperone protein Hfq in the human pathogen Clostridium difficile. J Bacteriol 196:3234–3248

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bouillaut L, Dubois T, Sonenshein AL et al (2015) Integration of metabolism and virulence in Clostridium difficile. Res Microbiol 166:375–383

    Article  CAS  PubMed  Google Scholar 

  • Brauer M, Lassek C, Hinze C et al (2021) What’s a biofilm?—how the choice of the biofilm model impacts the protein inventory of Clostridioides difficile. Front Microbiol 12:682111

    Article  PubMed  PubMed Central  Google Scholar 

  • Bridier A, Briandet R, Thomas V, Dubois-Brissonnet F (2011) Resistance of bacterial biofilms to disinfectants: a review. Biofouling 27:1017–1032

    Article  CAS  PubMed  Google Scholar 

  • Brunetti G, Giuliani A, Navazio AS et al (2021) Candida gut colonization, yeast species distribution, and biofilm production in Clostridioides difficile infected patients: a comparison between three populations in two different time periods. Braz J Microbiol 52:1845–1852

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Buckley AM, Spencer J, Candlish D et al (2011) Infection of hamsters with the UK Clostridium difficile ribotype 027 outbreak strain R20291. J Med Microbiol 60:1174–1180

    Article  PubMed  PubMed Central  Google Scholar 

  • Butala M, Zgur-Bertok D, Busby SJ (2009) The bacterial LexA transcriptional repressor. Cell Mol Life Sci 66(1):82–93. https://doi.org/10.1007/s00018-008-8378-6

    Article  CAS  PubMed  Google Scholar 

  • Buckley AM, Ewin D, Moura IB et al (2021) Insights into the regulatory mechanisms of Clostridioides difficile biofilm formation. bioRxiv. https://doi.org/10.1101/2021.02.19.431970

  • Cairns LS, Marlow VL, Bissett E et al (2013) A mechanical signal transmitted by the flagellum controls signalling in Bacillus subtilis. Mol Microbiol 90:6–21

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cairns LS, Hobley L, Stanley-Wall NR (2014) Biofilm formation by Bacillus subtilis: New insights into regulatory strategies and assembly mechanisms. Mol Microbiol 93:587–598

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Carter GP, Purdy D, Williams P et al (2005) Quorum sensing in Clostridium difficile: Analysis of a luxS-type signalling system. J Med Microbiol 54:119–127

    Article  CAS  PubMed  Google Scholar 

  • Carter GP, Rood JI, Lyras D (2012) The role of toxin A and toxin B in the virulence of Clostridium difficile. Trends Microbiol 20:21–29

    Article  CAS  PubMed  Google Scholar 

  • Cerquetti M, Molinari A, Sebastianelli A et al (2000) Characterization of surface layer proteins from different Clostridium difficile clinical isolates. Microb Pathog 28:363–372

    Article  CAS  PubMed  Google Scholar 

  • Chang-Graham AL, Danhof HA, Engevik MA et al (2019) Human intestinal enteroids with inducible neurogenin-3 expression as a novel model of gut hormone secretion. Cell Mol Gastroenterol Hepatol 8:209–229

    Article  PubMed  PubMed Central  Google Scholar 

  • Chao Y, Vogel J (2010) The role of Hfq in bacterial pathogens. Cur Opin Microbiol 13:24–33

    Article  CAS  Google Scholar 

  • Chilton CH, Pickering DS, Freeman J (2018) Microbiologic factors affecting Clostridium difficile recurrence. Clin Microbiol Infect 24:476–482

    Article  CAS  PubMed  Google Scholar 

  • Ciofu O, Rojo-Molinero E, Macià MD et al (2017) Antibiotic treatment of biofilm infections. APMIS 125:304–319

    Article  PubMed  Google Scholar 

  • Condinho M, Carvalho B, Cruz A et al (2022) The role of RNA regulators, quorum sensing and c-di-GMP in bacterial biofilm formation. FEBS Open Bio. https://doi.org/10.1002/2211-5463.13389

  • Costa CL, Azevedo CP, Quesada-Gómez C et al (2021) Inhibitory effect of Brazilian red propolis on planktonic and biofilm forms of Clostridioides difficile. Anaerobe 69:102322

    Article  CAS  PubMed  Google Scholar 

  • Crowther GS, Chilton CH, Todhunter SL et al (2014a) Comparison of planktonic and biofilm-associated communities of Clostridium difficile and indigenous gut microbiota in a triple-stage chemostat gut model. J Antimicrob Chemother 69:2137–2147

    Article  CAS  PubMed  Google Scholar 

  • Crowther GS, Chilton CH, Todhunter SL et al (2014b) Development and validation of a chemostat gut model to study both planktonic and biofilm modes of growth of Clostridium difficile and human microbiota. PLoS One 9:e88396

    Article  PubMed  PubMed Central  Google Scholar 

  • Cuenot E, Garcia-Garcia T, Douche T et al (2019) The Ser/Thr kinase PrkC participates in cell wall homeostasis and antimicrobial resistance in Clostridium difficile. Infect Immun 87:e00005–e00019

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cummings JH, Antoine JM, Azpiroz F et al (2004) PASSCLAIM: gut health and immunity. Eur J Nutr 43:II118–II173

    Article  PubMed  Google Scholar 

  • Dapa T, Unnikrishnan M (2013) Biofilm formation by Clostridium difficile. Gut Microbes 4:397–402

    Article  PubMed  PubMed Central  Google Scholar 

  • Ðapa T, Leuzzi R, Baban ST et al (2013) Multiple factors modulate biofilm formation by the anaerobic pathogen Clostridium difficile. J Bacteriol 195:545–555

    Article  PubMed  PubMed Central  Google Scholar 

  • Dawson LF, Valiente E, Faulds-Pain A et al (2012) Characterisation of Clostridium difficile biofilm formation, a role for Spo0A. PLoS One 7:e50527

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dawson LF, Peltier J, Hall CL et al (2021) Extracellular DNA, cell surface proteins and c-di-GMP promote biofilm formation in Clostridioides difficile. Sci Rep 11:3244

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • de la Riva L, Willing SE, Tate EW et al (2011) Roles of cysteine proteases Cwp84 and Cwp13 in biogenesis of the cell wall of Clostridium difficile. J Bacteriol 193:3276–3285

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • De Sordi L, Butt MA, Pye H et al (2015) Development of Photodynamic Antimicrobial Chemotherapy (PACT) for Clostridium difficile. PLoS One 10:e0135039

    Article  PubMed  PubMed Central  Google Scholar 

  • Di Martino P (2018) Extracellular polymeric substances, a key element in understanding biofilm phenotype. AIMS Microbiol 4:274–288

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dineen SS, McBride SM, Sonenshein AL (2010) Integration of metabolism and virulence by Clostridium difficile CodY. J Bacteriol 192:5350–5362

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Doan TH, Bernet-Camard MF, Hoÿs S et al (2022) Impact of subinhibitory concentrations of metronidazole on morphology, motility, biofilm formation and colonization of Clostridioides difficile. Antibiotics (Basel) 11:624

    Article  CAS  PubMed  Google Scholar 

  • Donelli G (2006) Vascular catheter-related infection and sepsis. Surg Infect (Larchmt) 7:S25–S27

    Article  PubMed  Google Scholar 

  • Donelli G, Vuotto C, Cardines R et al (2012) Biofilm-growing intestinal anaerobic bacteria. FEMS Immunol Med Microbiol 65:318–325

    Article  CAS  PubMed  Google Scholar 

  • Dubois T, Tremblay YDN, Hamiot A et al (2019) A microbiota-generated bile salt induces biofilm formation in Clostridium difficile. NPJ Biofilms Microbiomes 5:14

    Article  PubMed  PubMed Central  Google Scholar 

  • Dupont HL (2013) Diagnosis and management of Clostridium difficile infection. Clin Gastroenterol Hepatol 11:1216–1223

    Article  PubMed  Google Scholar 

  • Edwards AN, Nawrocki KL, McBride SM (2014) Conserved oligopeptide permeases modulate sporulation initiation in Clostridium difficile. Infect Immun 82:4276–4291

    Article  PubMed  PubMed Central  Google Scholar 

  • Engevik MA, Danhof HA, Chang-Graham AL et al (2020) Human intestinal enteroids as a model of Clostridioides difficile-induced enteritis. Am J Physiol Gastrointest Liver Physiol 318:G870–G888

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Engevik MA, Danhof HA, Auchtung J et al (2021) Fusobacterium nucleatum adheres to Clostridioides difficile via the RadD adhesin to enhance biofilm formation in intestinal mucus. Gastroenterology 160:1301–1314.e8

    Article  CAS  PubMed  Google Scholar 

  • Fagan RP, Fairweather NF (2014) Biogenesis and functions of bacterial S-layers. Nat rev Microbiol 12:211–222

    Article  CAS  PubMed  Google Scholar 

  • Faulds-Pain A, Twine SM, Vinogradov E et al (2014) The post-translational modification of the Clostridium difficile flagellin affects motility, cell surface properties and virulence. Mol Microbiol 94:272–289

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ferreyra JA, Wu KJ, Hryckowian AJ et al (2014) Gut microbiota-produced succinate promotes C. Difficile infection after antibiotic treatment or motility disturbance. Cell Host Microbe 16:770–777

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Flemming HC, Wingender J (2010) The biofilm matrix. Nat Rev Microbiol 8:623–633

    Article  CAS  PubMed  Google Scholar 

  • Frost LR, Cheng JKJ, Unnikrishnan M (2021) Clostridioides difficile biofilms: a mechanism of persistence in the gut? PLoS Pathog 17:e1009348

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fuchs M, Lamm-Schmidt V, Sulzer J et al (2021) An RNA-centric global view of Clostridioides difficile reveals broad activity of Hfq in a clinically important gram-positive bacterium. Proc Natl Acad Sci U S A 118:e2103579118

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Furukawa K, Gu H, Sudarsan N et al (2012) Identification of ligand analogues that control c-di-GMP riboswitches. ACS Chem Biol 7:1436–1443

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Furuya-Kanamori L, Marquess J, Yakob L et al (2015) Asymptomatic Clostridium Difficile colonization: epidemiology and clinical implications. BMC Infect Dis 15:516

    Article  PubMed  PubMed Central  Google Scholar 

  • Ganeshapillai J, Vinogradov E, Rousseau J et al (2008) Clostridium difficile cell-surface polysaccharides composed of pentaglycosyl and hexaglycosyl phosphate repeating units. Carbohydr Res 343:703e10

    Article  Google Scholar 

  • Garrett EM, Mehra A, Sekulovic O et al (2022) Multiple regulatory mechanisms control the production of CmrRST, an atypical signal transduction system in Clostridioides difficile. mBio 13:e0296921

    Article  Google Scholar 

  • Ghigo JM (2001) Natural conjugative plasmids induce bacterial biofilm development. Nature 412:442–445

    Article  CAS  PubMed  Google Scholar 

  • Ghosh S, Zhang P, Li YQ et al (2009) Superdormant spores of Bacillus species have elevated wet-heat resistance and temperature requirements for heat activation. J Bacteriol 191:5584–5591

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gil F, Paredes-Sabja D (2016) Acyldepsipeptide antibiotics as a potential therapeutic agent against Clostridium difficile recurrent infections. Future Microbiol 11:1179–1189

    Article  CAS  PubMed  Google Scholar 

  • Gil F, Pizarro-Guajardo M, Álvarez R (2015) Clostridium difficile recurrent infection: possible implication of TA systems. Future Microbiol 10:1649–1657

    Article  CAS  PubMed  Google Scholar 

  • Goldberg J (2002) Biofilms and antibiotic resistance: a genetic linkage. Trends Microbiol 10:264

    Article  CAS  Google Scholar 

  • Goulding D, Thompson H, Emerson J et al (2009) Distinctive profiles of infection and pathology in hamsters infected with Clostridium difficile strains 630 and B1. Infect Immun 77:5478–5485

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hall-Stoodley L, Stoodley P (2009) Evolving concepts in biofilm infections. Cell Microbiol 11:1034–1043

    Article  CAS  PubMed  Google Scholar 

  • Hall-Stoodley L, Costerton JW, Stoodley P (2004) Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol 2:95–108

    Article  CAS  PubMed  Google Scholar 

  • Hamada M, Yamaguchi T, Ishii Y et al (2020) Inhibitory effect of fidaxomicin on biofilm formation in Clostridioides difficile. J Infect Chemother 26:685–692

    Article  CAS  PubMed  Google Scholar 

  • Hammond EN, Donkor ES, Brown CA (2014) Biofilm formation of Clostridium difficile and susceptibility to Manuka honey. BMC Complement Altern Med 14:329

    Article  PubMed  PubMed Central  Google Scholar 

  • Hashem AA, Abd El Fadeal NM et al (2017) In vitro activities of vancomycin and linezolid against biofilm-producing methicillin-resistant staphylococci species isolated from catheter-related bloodstream infections from an Egyptian tertiary hospital. J Med Microbiol 66:744–752

    Article  CAS  PubMed  Google Scholar 

  • Hassall J, Cheng JKJ, Unnikrishnan M (2021) Dissecting individual interactions between pathogenic and commensal bacteria within a multispecies gut microbial community. mSphere 6(2):e00013-21. https://doi.org/10.1128/mSphere.00013-21

    Article  PubMed  PubMed Central  Google Scholar 

  • Hoiby N, Bjarnsholt T, Givskov M et al (2010) Antibiotic resistance of bacterial biofilms. Int J Antimicrob Agents 35:322–332

    Article  PubMed  Google Scholar 

  • Hou K, Wu ZX, Chen XY et al (2022) Microbiota in health and diseases. Signal Transduct Target Ther 7:135

    Article  PubMed  PubMed Central  Google Scholar 

  • Hu X, Kang F, Yang B et al (2019) Extracellular polymeric substances acting as a permeable barrier hinder the lateral transfer of antibiotic resistance genes. Front Microbiol 10:736

    Article  PubMed  PubMed Central  Google Scholar 

  • James GA, Chesnel L, Boegli L et al (2018) Analysis of Clostridium difficile biofilms: imaging and antimicrobial treatment. J Antimicrob Chemother 73:102–108

    Article  CAS  PubMed  Google Scholar 

  • Jimi S, Miyazaki M, Takata T et al (2017) Increased drug resistance of meticillin-resistant Staphylococcus aureus biofilms formed on a mouse dermal chip model. J Med Microbiol 66:542–550

    Article  PubMed  PubMed Central  Google Scholar 

  • Kirby JM, Ahern H, Roberts AK et al (2009) Cwp84, a surface-associated cysteine protease, plays a role in the maturation of the surface layer of Clostridium difficile. J Biol Chem 284:34666–34673

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Klausen M, Aaes-Jørgensen A, Molin S et al (2003) Involvement of bacterial migration in the development of complex multicellular structures in Pseudomonas aeruginosa biofilms. Mol Microbiol 50:61–68

    Article  CAS  PubMed  Google Scholar 

  • Koch B, Worm J, Jensen LE et al (2001) Carbon limitation induces s-dependent gene expression in Pseudomonas fluorescens in soil. Appl Environ Microbiol 67:3363–3370

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kulasakara H, Lee V, Brencic A et al (2006) Analysis of Pseudomonas aeruginosa diguanylatecyclases and phosphodiesterases reveals a role for bis-(3′-5′)-cyclic-GMP in virulence. Proc Natl Acad Sci USA 103:2839–2844

    Google Scholar 

  • Lacotte PA, Simons A, Bouttier S et al (2022) Inhibition of in vitro Clostridioides difficile biofilm formation by the probiotic yeast Saccharomyces boulardii CNCM I-745 through modification of the extracellular matrix composition. Microorganisms 10:1082

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lawley TD, Clare S, Walker AW et al (2009) Antibiotic treatment of Clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts. Infect Immun 77:3661–3669

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lee ASY, Song KP (2005) LuxS/autoinducer-2 quorum sensing molecule regulates transcriptional virulence gene expression in Clostridium difficile. Biochem Biophys Res Commun 335:659–666

    Article  CAS  PubMed  Google Scholar 

  • Leslie JL, Huang S, Opp JS et al (2015) Persistence and toxin production by Clostridium difficile within human intestinal organoids result in disruption of epithelial paracellular barrier function. Infect Immun 83:138–145

    Article  PubMed  Google Scholar 

  • Li YH, Tian X (2012) Quorum sensing and bacterial social interactions in biofilms. Sensors (Basel) 12:2519–2538

    Article  CAS  PubMed  Google Scholar 

  • Lindsay D, von Holy A (2006) Bacterial biofilms within the clinical setting: what healthcare professionals should know. J Hosp Infect 64:313–325

    Article  CAS  PubMed  Google Scholar 

  • Lipovsek S, Leitinger G, Rupnik M (2013) Ultrastructure of Clostridium difficile colonies. Anaerobe 24:66e70

    Article  Google Scholar 

  • Macfarlane S, Dillon JF (2007) Microbial biofilms in the human gastrointestinal tract. J Appl Microbiol 102:1187–1196

    Article  CAS  PubMed  Google Scholar 

  • Macfarlane S, Macfarlane GT (2006) Composition and metabolic activities of bacterial biofilms colonizing food residues in the human gut. Appl Environ Microbiol 72:6204–6211

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Macfarlane GT, Macfarlane S, Gibson GR (1998) Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colon. Microb Ecol 35:180–187

    Article  CAS  PubMed  Google Scholar 

  • Macfarlane S, Bahrami B, Macfarlane GT (2011) Mucosal biofilm communities in the human intestinal tract. Adv Appl Microbiol 75:111–143

    Article  CAS  PubMed  Google Scholar 

  • Machado D, Castro J, Palmeira-de-Oliveira A et al (2015) Bacterial vaginosis biofilms: challenges to current therapies and emerging solutions. Front Microbiol 6:152

    Google Scholar 

  • Mah TF, O’Toole GA (2001) Mechanisms of biofilm resistance to antimicrobial agents. Trends Microbiol 9:34–39

    Article  CAS  PubMed  Google Scholar 

  • Mahnic A, Auchtung JM, Poklar Ulrih N et al (2020) Microbiota in vitro modulated with polyphenols shows decreased colonization resistance against Clostridioides difficile but can neutralize cytotoxicity. Sci Rep 10:8358

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Maldarelli GA, De Masi L, von Rosenvinge EC et al (2014) Identification, immunogenicity and cross-reactivity of Type IV pilin and pilin-like proteins from Clostridium difficile. Pathog Dis 71:302–314

    Article  CAS  PubMed  Google Scholar 

  • Maldarelli GA, Piepenbrink KH, Scott AJ et al (2016) Type IV pili promote early biofilm formation by Clostridium difficile. Pathog Dis 74:ftw061

    Article  PubMed  PubMed Central  Google Scholar 

  • Martínez-Meléndez A, Morfin-Otero R, Villarreal-Treviño L et al (2021) Analysis of biofilm production and expression of adhesion structures of circulating Clostridioides difficile strains from Mexico. Enferm Infecc Microbiol Clin (Engl Ed). https://doi.org/10.1016/j.eimc.2021.01.017

  • Mathur H, Rea MC, Cotter PD et al (2016) The efficacy of thuricin CD, tigecycline, vancomycin, teicoplanin, rifampicin and nitazoxanide, independently and in paired combinations against Clostridium difficile biofilms and planktonic cells. Gut Pathog 8:20

    Article  PubMed  PubMed Central  Google Scholar 

  • Mccracken KW, Howell JC, Wells JM, Spence JR (2011) Generating human intestinal tissue from pluripotent stem cells in vitro. Nat Protoc 6:1920–1928

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Meeker DG, Beenken KE, Mills WB et al (2016) Evaluation of antibiotics active against methicillin-resistant Staphylococcus aureus based on activity in an established biofilm. Antimicrob Agents Chemother 60:5688–5694

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Melville S, Craig L (2013) Type IV pili in gram-positive bacteria. Microbiol Mol Biol Rev 77:323–341

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mhatre E, Monterrosa RG, Kovács ÁT (2014) From environmental signals to regulators: modulation of biofilm development in Gram-positive bacteria. J Basic Microbiol 54:616–632

    Article  PubMed  Google Scholar 

  • Motta JP, Wallace JL, Buret AG et al (2021) Gastrointestinal biofilms in health and disease. Nat Rev Gastroenterol Hepatol 18:314–334

    Article  PubMed  Google Scholar 

  • Nale JY, Chutia M, Carr P et al (2016) ‘Get in Early’; biofilm and wax moth (Galleria mellonella) models reveal new insights into the therapeutic potential of Clostridium difficile bacteriophages. Front Microbiol 7:1383

    Article  PubMed  PubMed Central  Google Scholar 

  • Nassif X, Beretti JL, Lowy J et al (1994) Roles of pilin and PilC in adhesion of Neisseria meningitidis to human epithelial and endothelial cells. Proc Natl Acad Sci U S A. 91:3769–3773

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nelson RL, Suda KJ, Evans CT (2017) Antibiotic treatment for Clostridium difficile-associated diarrhoea in adults. Cochrane Database Syst Rev 3:CD004610

    PubMed  Google Scholar 

  • Ng KM, Ferreyra JA, Higginbottom SK et al (2013) Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature 502:96–99

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Normington C, Moura IB, Bryant JA et al (2021) Biofilms harbour Clostridioides difficile, serving as a reservoir for recurrent infection. npj Biofilms Microbiomes 7:16

    Article  PubMed  PubMed Central  Google Scholar 

  • Ofosu A (2016) Clostridium difficile infection: a review of current and emerging therapies. Ann Gastroenterol 29:147–154

    Article  PubMed  PubMed Central  Google Scholar 

  • Owrangi B, Masters N, Vollmerhausen TL et al (2017) Comparison between virulence characteristics of dominant and non-dominant Escherichia coli strains of the gut and their interaction with Caco-2 cells. Microb Pathog 105:171–176

    Article  CAS  PubMed  Google Scholar 

  • Ozturk B, Gunay N, Ertugrul BM et al (2016) Effects of vancomycin, daptomycin, and tigecycline on coagulase-negative staphylococcus biofilm and bacterial viability within biofilm: an in vitro biofilm model. Can J Microbiol 62:735–743

    Article  CAS  PubMed  Google Scholar 

  • Pantaléon V, Bouttier S, Soavelomandroso AP et al (2014) Biofilms of Clostridium species. Anaerobe 30:193–198

    Article  PubMed  Google Scholar 

  • Pantaléon V, Soavelomandroso AP, Bouttier S et al (2015) The Clostridium difficile protease Cwp84 modulates both biofilm formation and cell-surface properties. PLoS ONE 10:1–20

    Article  Google Scholar 

  • Pantaléon V, Monot M, Eckert C et al (2018) Clostridium difficile forms variable biofilms on abiotic surface. Anaerobe 53:34–37

    Article  PubMed  Google Scholar 

  • Peng JS, Tsai WC, Chou CC (2002) Inactivation and removal of Bacillus cereus by sanitizer and detergent. Int J Food Microbiol 77:11–18

    Article  CAS  PubMed  Google Scholar 

  • Peng Z, Jin D, Kim HB et al (2017) Update on antimicrobial resistance in Clostridium difficile: resistance mechanisms and antimicrobial susceptibility testing. J Clin Microbiol 55:1998–2008

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Percival SL, Suleman L, Francolini I et al (2014) The effectiveness of photodynamic therapy on planktonic cells and biofilms and its role in wound healing. Future Microbiol 9:1083–1094

    Article  CAS  PubMed  Google Scholar 

  • Percival SL, Suleman L, Vuotto C et al (2015) Healthcare-associated infections, medical devices and biofilms: risk, tolerance and control. J Med Microbiol 64:323–334

    Article  PubMed  Google Scholar 

  • Pérez-Cobas AE, Artacho A, Ott SJ et al (2014) Structural and functional changes in the gut microbiota associated to Clostridium Difficile infection. Front Microbiol 5:220–234

    Google Scholar 

  • Pettit LJ, Browne HP, Yu L et al (2014) Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism. BMC genomics 15:160

    Article  PubMed  PubMed Central  Google Scholar 

  • Phalak P, Henson MA (2019) Metabolic modeling of Clostridium difficile associated dysbiosis of the gut microbiota. Processes 7:97

    Article  CAS  Google Scholar 

  • Pickering DS, Wilcox MH, Chilton CH (2018) Biofilm-derived spores of Clostridioides (Clostridium) difficile exhibit increased thermotolerance compared to planktonic spores. Anaerobe 54:169–171

    Article  CAS  PubMed  Google Scholar 

  • Piepenbrink KH, Maldarelli GA, de la Peña CF et al (2014) Structure of Clostridium difficile PilJ exhibits unprecedented divergence from known Type IV pilins. J Biol Chem 289:4334–4345

    Article  CAS  PubMed  Google Scholar 

  • Piepenbrink KH, Maldarelli GA, Martinez de la Peña CF et al (2015) Structural and evolutionary analyses show unique stabilization strategies in the Type IV pili of Clostridium difficile. Structure 23:385–396

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Piotrowski M, Karpiński P, Pituch H, van Belkum A, Obuch-Woszczatyński P (2017) Antimicrobial effects of Manuka honey on in vitro biofilm formation by Clostridium difficile. Eur J Clin Microbiol Infect Dis. https://doi.org/10.1007/s10096-017-2980-1

  • Piotrowski M, Wultańska D, Obuch-Woszczatyński P, Pituch H (2019) Fructooligosaccharides and mannose affect Clostridium difficile adhesion and biofilm formation in a concentration-dependent manner. Eur J Clin Microbiol Infect Dis 38:1975–1984

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Piotrowski M, Wultańska D, Pituch H (2022) Effect of prebiotics on Bacteroides sp. adhesion and biofilm formation and synbiotic effect on Clostridioides difficile. Future Microbiol 17:363–375

    Article  CAS  PubMed  Google Scholar 

  • Pizarro-Guajardo M, Calderón-Romero P, Castro-Córdova P et al (2016a) Ultrastructural variability of the exosporium layer of Clostridium difficile spores. Appl Environ Microbiol 82:2202–2209

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pizarro-Guajardo M, Calderón-Romero P, Paredes-Sabja D (2016b) Ultrastructure variability of the exosporium layer of Clostridium difficile spores from sporulating cultures and biofilms. Appl Environ Microbiol 82:5892–5898

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Poquet I, Saujet L, Canette A et al (2018) Clostridium difficile biofilm: remodeling metabolism and cell surface to build a sparse and heterogeneously aggregated architecture. Front Microbiol 9:2084

    Article  PubMed  PubMed Central  Google Scholar 

  • Purcell EB, McKee RW, McBride SM et al (2012) Cyclic diguanylate inversely regulates motility and aggregation in Clostridium difficile. J Bacteriol 194:3307–3316

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Purcell EB, McKee RW, Bordeleau E et al (2016) Regulation of Type IV pili contributes to surface behaviours of historical and epidemic strains of Clostridium difficile. J Bacteriol 198:565–577

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Purcell EB, McKee RW, Courson DS et al (2017) A nutrient-regulated cyclic diguanylate phosphodiesterase controls Clostridium difficile biofilm and toxin production during stationary phase. Infect Immun 85(9):e00347-17

    Article  PubMed  PubMed Central  Google Scholar 

  • Rahmoun LA, Azrad M, Peretz A (2021) Antibiotic resistance and biofilm production capacity in Clostridioides difficile. Front Cell Infect Microbiol 11:683464

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rashid T, Haghighi F, Hasan I et al (2019) Activity of hospital disinfectants against vegetative cells and spores of Clostridioides difficile embedded in biofilms. Antimicrob Agents Chemother 64:e01031-19

    Article  PubMed  PubMed Central  Google Scholar 

  • Ribeiro SM, Felício MR, Boas EV et al (2016) New frontiers for anti-biofilm drug development. Pharmacol Ther 160:133–144

    Article  CAS  PubMed  Google Scholar 

  • Robinson CD, Auchtung JM, Collins J, Britton RA (2014) Epidemic Clostridium difficile strains demonstrate increased competitive fitness compared to nonepidemic isolates. Infect Immun 82:2815–2825

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Römling U, Amikam D (2006) Cyclic di-GMP as a second messenger. Cur Opin Microbiol 9:218–228

    Article  Google Scholar 

  • Römling U, Balsalobre C (2012) Biofilm infections, their resilience to therapy and innovative treatment strategies. J Intern Med 272(6):541–561. https://doi.org/10.1111/joim.12004

    Article  CAS  PubMed  Google Scholar 

  • Ronish LA, Sidner B, Yu Y, Piepenbrink KH (2022) Recognition of extracellular DNA by type IV pili promotes biofilm formation by Clostridioides difficile. J Biol Chem 298:102449

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rossi E, Cimdins A, Lüthje P et al (2017) “It’s a gut feeling”—Escherichia coli biofilm formation in the gastrointestinal tract environment. Crit Rev Microbiol 9:1–30

    Google Scholar 

  • Rothenbacher FP, Suzuki M, Hurley JM et al (2012) Clostridium difficile MazF toxin exhibits selective, not global, mRNA cleavage. J Bacteriol 194:3464–3474

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Roy R, Tiwari M, Donelli G et al (2017) Strategies for combating bacterial biofilms: A focus on anti-biofilm agents and their mechanisms of action. Virulence. https://doi.org/10.1080/21505594.2017.1313372

  • Sauer K, Stoodley P, Goeres DM et al (2022) The biofilm life cycle: expanding the conceptual model of biofilm formation. Nat Rev Microbiol 20:608–620

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schiffrin EJ, Blum S (2002) Interactions between the microbiota and the intestinal mucosa. Eur J Clin Nutr 56(Suppl 3):S60–S64

    Article  PubMed  Google Scholar 

  • Schulze A, Mitterer F, Pombo JP, Schild S (2021) Biofilms by bacterial human pathogens: Clinical relevance—development, composition and regulation—therapeutical strategies. Microb Cell 8:28–56

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sculean A, Aoki A, Romanos G et al (2015) Is photodynamic therapy an effective treatment for periodontal and peri-implant infections? Dent Clin North Am 59:831–858

    Article  PubMed  Google Scholar 

  • Sebaihia M, Wren BW, Mullany P et al (2006) The multidrug resistant pathogen Clostridium difficile has a highly mobile mosaic genome. Nat Genet 38:779–786

    Article  PubMed  Google Scholar 

  • Semenyuk EG, Laning ML, Foley J et al (2014) Spore formation and toxin production in Clostridium difficile biofilms. PLoS One 9:e87757

    Article  PubMed  PubMed Central  Google Scholar 

  • Semenyuk EG, Poroyko VA, Johnston PF et al (2015) Analysis of bacterial communities during Clostridium difficile infection in the mouse. Infect Immun 83:4383–4391

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sengupta C, Mukherjee O, Chowdhury R (2016) Adherence to intestinal cells promotes biofilm formation in Vibrio cholerae. J Infect Dis 214:1571–1578

    Article  CAS  PubMed  Google Scholar 

  • Shah D, Zhang Z, Khodursky A et al (2006) Persisters: a distinct physiological state of E. coli. BMC Microbiol 6:53

    Article  PubMed  PubMed Central  Google Scholar 

  • Silva JO, Martins Reis AC, Quesada-Gómez C et al (2014) In vitro effect of antibiotics on biofilm formation by Bacteroides fragilis group strains isolated from intestinal microbiota of dogs and their antimicrobial susceptibility. Anaerobe 28:24–28

    Article  CAS  PubMed  Google Scholar 

  • Slater RT, Frost LR, Jossi SE et al (2019) Clostridioides difficile LuxS mediates inter-bacterial interactions within biofilms. Sci Rep 9:9903

    Article  PubMed  PubMed Central  Google Scholar 

  • Smith AB, Jenior ML, Keenan O et al (2022) Enterococci enhance Clostridioides difficile pathogenesis. Nature 611:780–786

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Soavelomandroso AP, Gaudin F, Hoys S et al (2017) Biofilm structures in a mono-associated mouse model of Clostridium difficile infection. Front Microbiol 8:2086

    Article  PubMed  PubMed Central  Google Scholar 

  • Soutourina O (2017) RNA-based control mechanisms of Clostridium difficile. Curr Opin Microbiol 36:62–68

    Article  CAS  PubMed  Google Scholar 

  • Soutourina OA, Monot M, Boudry P et al (2013) Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. PLoS Genet 9:e1003493

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Spencer J, Leuzzi R, Buckley A et al (2014) Vaccination against Clostridium difficile using toxin fragments: Observations and analysis in animal models. Gut Microbes 5:23–22

    Article  Google Scholar 

  • Spigaglia P (2016) Recent advances in the understanding of antibiotic resistance in Clostridium difficile infection. Ther Adv Infect Dis 3:23–42

    CAS  PubMed  PubMed Central  Google Scholar 

  • Spoering AL, Lewis K (2001) Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials. J Bacteriol 183:6746–6751

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stabler RA, He M, Dawson L, Martin M, Valiente E, Corton C, Lawley TD, Sebaihia M, Quail MA, Rose G, Gerding DN, Gibert M, Popoff MR, Parkhill J, Dougan G, Wren BW (2009) Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium. Genome Biol 10(9):R102. https://doi.org/10.1186/gb-2009-10-9-r102

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stevenson E, Minton NP, Kuehne SA (2015) The role of flagella in Clostridium difficile pathogenicity. Trends Microbiol 23:1–8

    Article  Google Scholar 

  • Sudarsan N, Lee ER, Weinberg Z et al (2008) Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321:411–413

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tischler AD, Camilli A (2005) Cyclicdiguanylate regulates Vibrio cholera virulence gene expression. Infect Immun 73:5873–5882

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tremblay YDN, Durand BAR, Hamiot A et al (2021) Metabolic adaption to extracellular pyruvate triggers biofilm formation in Clostridioides difficile. ISME J 15:3623–3635

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Twine SM, Reid CW, Aubry A et al (2009) Motility and flagellar glycosylation in Clostridium difficile. J Bacteriol 191:7050–7062

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tyerman JG, Ponciano JM, Joyce P et al (2013) The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibiotics. BMC Evol Biol 13:22

    Article  PubMed  PubMed Central  Google Scholar 

  • Valiente E, Bouché L, Hitchen P et al (2016) Role of glycosyltransferases modifying type B flagellin of emerging hypervirulent Clostridium difficile lineages and their impact on motility and biofilm formation. J Biol Chem 291:25450–25461

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vandana, Das S (2022) Genetic regulation, biosynthesis and applications of extracellular polysaccharides of the biofilm matrix of bacteria. Carbohydr Polym 291:119536

    Article  CAS  PubMed  Google Scholar 

  • Varga JJ, Nguyen V, O’Brien DK et al (2006) Type IV pili-dependent gliding motility in the Gram-positive pathogen Clostridium perfringens and other Clostridia. Mol Microbiol 62:680–694

    Article  CAS  PubMed  Google Scholar 

  • Varga JJ, Therit B, Melville SB (2008) Type IV pili and the CcpA protein are needed for maximal biofilm formation by the gram-positive anaerobic pathogen Clostridium perfringens. Infect Immun 76:4944–4951

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vlamakis H, Chai Y, Beauregard P et al (2013) Sticking together: building a biofilm the Bacillus subtilis way. Nat Rev Microbiol 11:157–168

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vuotto C, Moura I, Barbanti F et al (2016) Sub-inhibitory concentrations of metronidazole increase biofilm formation in Clostridium difficile strains. Pathog Dis 74:ftv114

    Article  PubMed  Google Scholar 

  • Walter BM, Rupnik M, Hodnik V et al (2014) The LexA regulated genes of the Clostridium difficile. BMC Microbiol 14:88

    Article  PubMed  PubMed Central  Google Scholar 

  • Walter BM, Cartman ST, Minton NP et al (2015) The SOS response master regulator LexA is associated with sporulation, motility and biofilm formation in Clostridium difficile. PLoS One 10:1–17

    Article  CAS  Google Scholar 

  • Wang X, Blumenfeld R, Feng XQ, Weitz DA (2022a) ‘Phase transitions’ in bacteria—from structural transitions in free living bacteria to phenotypic transitions in bacteria within biofilms. Phys Life Rev 43:98–138

    Article  PubMed  Google Scholar 

  • Wang Y, Bian Z, Wang Y (2022b) Biofilm formation and inhibition mediated by bacterial quorum sensing. Appl Microbiol Biotechnol 106:6365–6381

    Article  CAS  PubMed  Google Scholar 

  • Wen Y, Behiels E, Devreese B (2014) Toxin-antitoxin systems: their role in persistence, biofilm formation, and pathogenicity. Pathog Dis 70:240–249

    Article  CAS  PubMed  Google Scholar 

  • Willing SE, Candela T, Shaw HA et al (2015) Clostridium difficile surface proteins are anchored to the cell wall using CWB2 motifs that recognise the anionic polymer PSII. Mol Microbiol 96:596–608

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Winkler WC, Breaker RR (2005) Regulation of bacterial gene expression by riboswitches. Ann Rev Microbiol 59:487–517

    Article  CAS  Google Scholar 

  • Xue Z, Sendamangalam VR, Gruden CL, Seo Y (2012) Multiple roles of extracellular polymeric substances on resistance of biofilm and detached clusters. Environ Sci Technol 46:13212–13219

    Article  CAS  PubMed  Google Scholar 

  • Yang HT, Chen JW, Rathod J et al (2018) Lauric acid is an inhibitor of Clostridium difficile growth in vitro and reduces inflammation in a mouse infection model. Front Microbiol 8:2635

    Article  PubMed  PubMed Central  Google Scholar 

  • Zhu D, Wang S, Sun X (2021) FliW and CsrA govern flagellin (FliC) synthesis and play pleiotropic roles in virulence and physiology of Clostridioides difficile R20291. Front Microbiol 12:735616

    Article  PubMed  PubMed Central  Google Scholar 

  • Zoetendal EG, von Wright A, Vilpponen-Salmela T et al (2002) Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from faeces. Appl Environ Microbiol 68:3401–3407

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Vuotto, C., Donelli, G., Buckley, A., Chilton, C. (2024). Clostridioides difficile Biofilm. In: Mastrantonio, P., Rupnik, M. (eds) Updates on Clostridioides difficile in Europe. Advances in Experimental Medicine and Biology(), vol 1435. Springer, Cham. https://doi.org/10.1007/978-3-031-42108-2_12

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