Abstract
Ecology has to do with the number of individuals or species in a biological population or community. Historically, the estimation of population size has been approached with different field methods and statistical analyses. One of the recent approaches to estimating population abundance, occupancy, and density is the use of hierarchical models. Essentially, these models integrate the ecological process (occupancy, abundance, and density) conditional to the observational process (the detection probability, usually <1.0) and estimate parameters through maximum likelihood and/or Bayesian statistical approaches. Occupancy, abundance, and density are central themes in many research projects, theses, and monitoring programs and have direct applications in the conservation and management of Neotropical mammal populations. In this introductory chapter, we briefly address these aspects to put in context the chapters that integrate this book.
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References
Andrewartha HG, Birch LG (1954) The distribution and abundance of animals. University of Chicago Press, Chicago
Buckland ST, Rexstad EA, Marques TA, Oedekoven CS (2015) Distance sampling: methods and applications. Springer International Publishing, Cham
Burgin CJ, Colella JP, Kahn PL, Upham NS (2018) How many species of mammals are there? J Mammal 99(1):1–14
Carrillo JD, Forasiepi A, Jaramillo C, Sánchez-Villagra MR (2015) Neotropical mammal diversity and the Great American Biotic Interchange: spatial and temporal variation in South America’s fossil record. Front Genet 5:451. https://doi.org/10.3389/fgene.2014.00451
Ceballos G, Ehrlich PR, Raven PH (2020) Vertebrates on the brink as indicators of biological annihilation and the sixth mass extinction. Proc Natl Acad Sci 117(24):13596–13602
Costa LP, Leite YL, Mendes S, Ditchfield AD (2005) Mammal conservation in Brazil. Conserv Biol 19(3):672–679
Denes FV, Silveira LF, Beissinger SR (2015) Estimating abundance of unmarked animal populations: accounting for imperfect detection and other sources of zero inflation. Methods Ecol Evol 6(5):543–556
Dirzo R, Ceballos G, Ehrlich PR (2022) Circling the drain: the extinction crisis and the future of humanity. Philos Trans R Soc B 377:20210378. https://doi.org/10.1098/rstb.2021.0378
Eisenberg JF (1989) Mammals of the Neotropics, vol. I: the northern Neotropics. University of Chicago Press, Chicago
García del Valle Y, Naranjo EJ, Caballero J, Martorell C, Ruan-Soto F, Enríquez PL (2015) Cultural significance of wild mammals in Mayan and mestizo communities of the Lacandon Rainforest, Chiapas, Mexico. J Ethnobiol Ethnomed 11:36. https://doi.org/10.1186/s13002-015-0021-7
Kéry M, Royle A (2016) Applied hierarchical modeling in ecology: analysis of distribution, abundance, and species richness in R and BUGS, vol 1. Elsevier Academic Press, Waltham
Kéry M, Royle A (2020) Applied hierarchical modeling in ecology: analysis of distribution, abundance, and species richness in R and BUGS, vol 2. Elsevier Academic Press, Waltham
Kéry M, Schaub M (2012) Bayesian population analysis using WinBUGS: a hierarchical perspective. Elsevier Academic Press, Waltham
Kéry M, Royle A, Meredith M (2022) AHMbook: functions and data for the book ‘applied hierarchical modeling in ecology’, vols 1 and 2. R package version 0.2.6. https://CRAN.R-project.org/package=AHMbook
Krebs CJ (1978) Ecology: the experimental analysis of distribution and abundance. University of British Columbia, Vancouver
MacKenzie DI, Nichols JD, Royle JA, Pollock KH, Bailey LL, Hines JE (eds) (2017) Occupancy estimation and modeling, 2nd edn. Academic, Boston
Magurran AE, McGill BJ (2010) Biological diversity: frontiers in measurement and assessment. OUP, Oxford
Nagy-Reis M, Oshima JE, Kanda C, Palmeira FB, De Melo F et al (2020) Neotropical carnivores: a data set on carnivore distribution in the Neotropics. Ecology 101(11):e03128. https://doi.org/10.1002/ecy.3128
Ojeda RA (2013) Diversity and conservation of Neotropical mammals. In: Levin SA (ed) Encyclopedia of biodiversity, vol 2, 2nd edn. Academic, Waltham, pp 582–594
Patterson BD (2020) On drivers of Neotropical mammal diversification. Mastozool Neotrop 27:15–26
Patton JL, Pardiñas UFJ, D’Elia G (2015) Mammals of South America, vol. 2 (Rodents). The University of Chicago Press
Royle JA, Dorazio RM (2008) Hierarchical modeling and inference in ecology: the analysis of data from populations, metapopulations and communities. Elsevier, Waltham
Royle JA, Chandler RB, Sollmann R, Gardner B (eds) (2014) Spatial capture-recapture. Academic, Boston
Simpson GG (1980) Splendid isolation: the curious history of South American mammals. University Press, New Haven
Solari S, Martinez-Arias V (2014) Recent changes in systematics and taxonomy of Neotropical bats (Mammalia: Chiroptera). Therya 5:167–196. https://doi.org/10.12933/therya-14-180
Thompson WL (2004) Sampling rare or elusive species: concepts, designs, and techniques for estimating population parameters. Island Press, Washington, DC
Valdez R (2019) Historical and conservation perspectives of wildlife in Mexico. In: Valdez R, Ortega JA (eds) Wildlife ecology and management in Mexico. Texas A&M University Press, College Station, pp 1–18
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Mandujano, S., Naranjo, E.J., Andrade-Ponce, G.P. (2023). Neotropical Mammals and the Analysis of Occupancy and Abundance. In: Mandujano, S., Naranjo, E.J., Andrade Ponce, G.P. (eds) Neotropical Mammals. Springer, Cham. https://doi.org/10.1007/978-3-031-39566-6_1
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