Skip to main content

Boundary-Aware Network for Kidney Parsing

  • Conference paper
  • First Online:
Lesion Segmentation in Surgical and Diagnostic Applications (CuRIOUS 2022, KiPA 2022, MELA 2022)

Abstract

Kidney structures segmentation is a crucial yet challenging task in the computer-aided diagnosis of surgery-based renal cancer. Although numerous deep learning models have achieved remarkable success in many medical image segmentation tasks, accurate segmentation of kidney structures on computed tomography angiography (CTA) images remains challenging, due to the variable sizes of kidney tumors and the ambiguous boundaries between kidney structures and their surroundings. In this paper, we propose a boundary-aware network (BA-Net) to segment kidneys, kidney tumors, arteries, and veins on CTA scans. This model contains a shared encoder, a boundary decoder, and a segmentation decoder. The multi-scale deep supervision strategy is adopted on both decoders, which can alleviate the issues caused by variable tumor sizes. The boundary probability maps produced by the boundary decoder at each scale are used as attention to enhance the segmentation feature maps. We evaluated the BA-Net on the Kidney PArsing (KiPA) Challenge dataset and achieved an average Dice score of 89.65\(\%\) for kidney structures segmentation on CTA scans using 4-fold cross-validation. The results demonstrate the effectiveness of the BA-Net. Code and pre-trained models are available at https://github.com/ShishuaiHu/BA-Net.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 44.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 59.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    https://kipa22.grand-challenge.org/.

References

  1. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  2. Dong, Z., et al.: MNET: rethinking 2d/3d networks for anisotropic medical image segmentation. arXiv preprint arXiv:2205.04846 (2022)

  3. He, Y., et al.: Dense biased networks with deep priori anatomy and hard region adaptation: semi-supervised learning for fine renal artery segmentation. Med. Image Anal. 63, 101722 (2020)

    Article  Google Scholar 

  4. He, Y., et al.: Meta grayscale adaptive network for 3d integrated renal structures segmentation. Med. Image Anal. 71, 102055 (2021)

    Article  Google Scholar 

  5. Heller, N., et al.: The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: results of the kits19 challenge. Med. Image Anal. 67, 101821 (2021)

    Article  Google Scholar 

  6. Hu, S., Zhang, J., Xia, Y.: Boundary-aware network for kidney tumor segmentation. In: Liu, M., Yan, P., Lian, C., Cao, X. (eds.) MLMI 2020. LNCS, vol. 12436, pp. 189–198. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59861-7_20

    Chapter  Google Scholar 

  7. Huang, Z., Wang, Z., zhikai yang, Gu, L.: ADWU-Net: adaptive depth and width u-net for medical image segmentation by differentiable neural architecture search. In: Medical Imaging with Deep Learning (2022). https://openreview.net/forum?id=kF-d1SKWJpS

  8. Isensee, F., Jaeger, P.F., Kohl, S.A.A., Petersen, J., Maier-Hein, K.H.: nnU-net: a self-configuring method for deep learning-based biomedical image segmentation. Nat. Methods. 18(2), 203–211 (2021). https://doi.org/10.1038/s41592-020-01008-zhttps://www.nature.com/articles/s41592-020-01008-z

  9. Jia, H., Song, Y., Huang, H., Cai, W., Xia, Y.: HD-Net: hybrid discriminative network for prostate segmentation in MR images. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11765, pp. 110–118. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32245-8_13

    Chapter  Google Scholar 

  10. Karimi, D., Salcudean, S.E.: Reducing the hausdorff distance in medical image segmentation with convolutional neural networks. IEEE Trans. Med. Imaging 39(2), 499–513 (2019)

    Article  Google Scholar 

  11. Kervadec, H., Bouchtiba, J., Desrosiers, C., Granger, E., Dolz, J., Ayed, I.B.: Boundary loss for highly unbalanced segmentation. In: International Conference on Medical Imaging with Deep Learning, pp. 285–296. PMLR (2019)

    Google Scholar 

  12. Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016)

    Google Scholar 

  13. Peng, C., et al.: HyperSegNAS: bridging one-shot neural architecture search with 3d medical image segmentation using hypernet. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), pp. 20741–20751, June 2022

    Google Scholar 

  14. Ronneberger, O., Fischer, P., Brox, T.: U-net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  15. Shao, P., et al.: Laparoscopic partial nephrectomy with segmental renal artery clamping: technique and clinical outcomes. Eur. Urol. 59(5), 849–855 (2011)

    Article  Google Scholar 

  16. Shao, P., et al.: Precise segmental renal artery clamping under the guidance of dual-source computed tomography angiography during laparoscopic partial nephrectomy. Eur. Urol. 62(6), 1001–1008 (2012)

    Article  Google Scholar 

  17. Shit, S., et al.: CLDICE-a novel topology-preserving loss function for tubular structure segmentation. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 16560–16569 (2021)

    Google Scholar 

Download references

Acknowledgement

This work was supported in part by the Natural Science Foundation of Ningbo City, China, under Grant 2021J052, in part by the Ningbo Clinical Research Center for Medical Imaging under Grant 2021L003, in part by the Open Project of Ningbo Clinical Research Center for Medical Imaging under Grant 2022LYKFZD06, and in part by the National Natural Science Foundation of China under Grants 62171377.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yong Xia .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Hu, S., Liao, Z., Ye, Y., Xia, Y. (2023). Boundary-Aware Network for Kidney Parsing. In: Xiao, Y., Yang, G., Song, S. (eds) Lesion Segmentation in Surgical and Diagnostic Applications. CuRIOUS KiPA MELA 2022 2022 2022. Lecture Notes in Computer Science, vol 13648. Springer, Cham. https://doi.org/10.1007/978-3-031-27324-7_2

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-27324-7_2

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-27323-0

  • Online ISBN: 978-3-031-27324-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics