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UNeXt: MLP-Based Rapid Medical Image Segmentation Network

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Medical Image Computing and Computer Assisted Intervention – MICCAI 2022 (MICCAI 2022)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13435))

Abstract

UNet and its latest extensions like TransUNet have been the leading medical image segmentation methods in recent years. However, these networks cannot be effectively adopted for rapid image segmentation in point-of-care applications as they are parameter-heavy, computationally complex and slow to use. To this end, we propose UNeXt which is a Convolutional multilayer perceptron (MLP) based network for image segmentation. We design UNeXt in an effective way with an early convolutional stage and a MLP stage in the latent stage. We propose a tokenized MLP block where we efficiently tokenize and project the convolutional features and use MLPs to model the representation. To further boost the performance, we propose shifting the channels of the inputs while feeding in to MLPs so as to focus on learning local dependencies. Using tokenized MLPs in latent space reduces the number of parameters and computational complexity while being able to result in a better representation to help segmentation. The network also consists of skip connections between various levels of encoder and decoder. We test UNeXt on multiple medical image segmentation datasets and show that we reduce the number of parameters by 72x, decrease the computational complexity by 68x, and improve the inference speed by 10x while also obtaining better segmentation performance over the state-of-the-art medical image segmentation architectures. Code is available at https://github.com/jeya-maria-jose/UNeXt-pytorch.

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References

  1. https://www.butterflynetwork.com/iq

  2. https://blog.google/technology/health/ai-dermatology-preview-io-2021/

  3. https://hyperfine.io/

  4. Al-Dhabyani, W., Gomaa, M., Khaled, H., Fahmy, A.: Dataset of breast ultrasound images. Data Brief 28, 104863 (2020)

    Google Scholar 

  5. Cao, H., et al.: Swin-UNet: UNet-like pure transformer for medical image segmentation. arXiv preprint arXiv:2105.05537 (2021)

  6. Chen, J., et al.: TransUNet: transformers make strong encoders for medical image segmentation. arXiv preprint arXiv:2102.04306 (2021)

  7. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  8. Codella, N.C., et al.: Skin lesion analysis toward melanoma detection: a challenge at the 2017 international symposium on biomedical imaging (ISBI), hosted by the international skin imaging collaboration (ISIC). In: 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), pp. 168–172. IEEE (2018)

    Google Scholar 

  9. Devlin, J., Chang, M.W., Lee, K., Toutanova, K.: BERT: pre-training of deep bidirectional transformers for language understanding. arXiv preprint arXiv:1810.04805 (2018)

  10. Dosovitskiy, A., et al.: An image is worth \(16\times 16\) words: transformers for image recognition at scale. arXiv preprint arXiv:2010.11929 (2020)

  11. Hatamizadeh, A., et al.: UNETR: transformers for 3D medical image segmentation. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 574–584 (2022)

    Google Scholar 

  12. Hendrycks, D., Gimpel, K.: Gaussian error linear units (GELUS). arXiv preprint arXiv:1606.08415 (2016)

  13. Huang, H., et al.: UNet 3+: a full-scale connected UNet for medical image segmentation. In: ICASSP 2020–2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), pp. 1055–1059. IEEE (2020)

    Google Scholar 

  14. Lian, D., Yu, Z., Sun, X., Gao, S.: As-MLP: an axial shifted MLP architecture for vision. arXiv preprint arXiv:2107.08391 (2021)

  15. Mehta, S., Mercan, E., Bartlett, J., Weaver, D., Elmore, J.G., Shapiro, L.: Y-Net: joint segmentation and classification for diagnosis of breast biopsy images. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11071, pp. 893–901. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00934-2_99

    Chapter  Google Scholar 

  16. Milletari, F., Navab, N., Ahmadi, S.A.: V-Net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016)

    Google Scholar 

  17. Poudel, R.P., Liwicki, S., Cipolla, R.: Fast-SCNN: fast semantic segmentation network. arXiv preprint arXiv:1902.04502 (2019)

  18. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  19. Sandler, M., Howard, A., Zhu, M., Zhmoginov, A., Chen, L.C.: MobileNetV2: inverted residuals and linear bottlenecks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 4510–4520 (2018)

    Google Scholar 

  20. Tolstikhin, I.O., et al.: MLP-mixer: an all-MLP architecture for vision. In: Advances in Neural Information Processing Systems 34 (2021)

    Google Scholar 

  21. Touvron, H., et al.: ResMLP: feedforward networks for image classification with data-efficient training. arXiv preprint arXiv:2105.03404 (2021)

  22. Valanarasu, J.M.J., Oza, P., Hacihaliloglu, I., Patel, V.M.: Medical transformer: gated axial-attention for medical image segmentation. In: de Bruijne, M., et al. (eds.) MICCAI 2021. LNCS, vol. 12901, pp. 36–46. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87193-2_4

    Chapter  Google Scholar 

  23. Valanarasu, J.M.J., Sindagi, V.A., Hacihaliloglu, I., Patel, V.M.: KiU-Net: towards accurate segmentation of biomedical images using over-complete representations. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12264, pp. 363–373. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59719-1_36

    Chapter  Google Scholar 

  24. Vashist, S.K.: Point-of-care diagnostics: recent advances and trends. Biosensors 7(4), 62 (2017)

    Article  Google Scholar 

  25. Wang, H., Zhu, Y., Green, B., Adam, H., Yuille, A., Chen, L.-C.: Axial-DeepLab: stand-alone axial-attention for panoptic segmentation. In: Vedaldi, A., Bischof, H., Brox, T., Frahm, J.-M. (eds.) ECCV 2020. LNCS, vol. 12349, pp. 108–126. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-58548-8_7

    Chapter  Google Scholar 

  26. Wang, W., Chen, C., Ding, M., Yu, H., Zha, S., Li, J.: TransBTS: multimodal brain tumor segmentation using transformer. In: de Bruijne, M., et al. (eds.) MICCAI 2021. LNCS, vol. 12901, pp. 109–119. Springer, Cham (2021). https://doi.org/10.1007/978-3-030-87193-2_11

    Chapter  Google Scholar 

  27. Xie, E., Wang, W., Yu, Z., Anandkumar, A., Alvarez, J.M., Luo, P.: SegFormer: simple and efficient design for semantic segmentation with transformers. arXiv preprint arXiv:2105.15203 (2021)

  28. Yu, T., Li, X., Cai, Y., Sun, M., Li, P.: S2-MLP: spatial-shift MLP architecture for vision. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 297–306 (2022)

    Google Scholar 

  29. Zhang, Z., Liu, Q., Wang, Y.: Road extraction by deep residual U-Net. IEEE Geosci. Remote Sens. Lett. 15(5), 749–753 (2018)

    Article  Google Scholar 

  30. Zhou, Z., Rahman Siddiquee, M.M., Tajbakhsh, N., Liang, J.: UNet++: a nested U-Net architecture for medical image segmentation. In: Stoyanov, D., et al. (eds.) DLMIA/ML-CDS -2018. LNCS, vol. 11045, pp. 3–11. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00889-5_1

    Chapter  Google Scholar 

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Correspondence to Jeya Maria Jose Valanarasu .

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Valanarasu, J.M.J., Patel, V.M. (2022). UNeXt: MLP-Based Rapid Medical Image Segmentation Network. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds) Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, vol 13435. Springer, Cham. https://doi.org/10.1007/978-3-031-16443-9_3

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  • DOI: https://doi.org/10.1007/978-3-031-16443-9_3

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