Abstract
Recent research has shown the potential for neural networks to improve upon classical survival models such as the Cox model, which is widely used in clinical practice. Neural networks, however, typically rely on data that are centrally available, whereas healthcare data are frequently held in secure silos. We present a federated Cox model that accommodates this data setting and also relaxes the proportional hazards assumption, allowing time-varying covariate effects. In this latter respect, our model does not require explicit specification of the time-varying effects, reducing upfront organisational costs compared to previous works. We experiment with publicly available clinical datasets and demonstrate that the federated model is able to perform as well as a standard model.
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Notes
- 1.
For source code, see https://github.com/dkaizhang/federated-survival.
References
Andreux, M., Manoel, A., Menuet, R., Saillard, C., & Simpson, C. (2020). Federated survival analysis with discrete-time cox models (pp. 1–21).
Antolini, L., Boracchi, P., & Biganzoli, E. (2005). A time-dependent discrimination index for survival data. Statistics in Medicine, 24(24), 3927–3944. https://doi.org/10.1002/sim.2427
Bellera, C. A., MacGrogan, G., Debled, M., De Lara, C. T., Brouste, V., & Mathoulin-Pélissier, S. (2010). Variables with time-varying effects and the Cox model: Some statistical concepts illustrated with a prognostic factor study in breast cancer. BMC Medical Research Methodology, 10. https://doi.org/10.1186/1471-2288-10-20
Bello, G. A., Dawes, T. J., Duan, J., Biffi, C., de Marvao, A., Howard, L. S., Gibbs, J. S. R., Wilkins, M. R., Cook, S. A., Rueckert, D., & O’Regan, D. P. (2019). Deep-learning cardiac motion analysis for human survival prediction. Nature Machine Intelligence, 1(2), 95–104. https://doi.org/10.1038/s42256-019-0019-2
Coradini, D., Daidone, M. G., Boracchi, P., Biganzoli, E., Oriana, S., Bresciani, G., Pellizzaro, C., Tomasic, G., Di Fronzo, G., & Marubini, E. (2000). Time-dependent relevance of steroid receptors in breast cancer. Journal of Clinical Oncology, 18(14), 2702–2709. https://doi.org/10.1200/JCO.2000.18.14.2702
Cox, D. R. (1972). Regression models and life-tables. Journal of the Royal Statistical Society. Series B (Methodological), 34(2), 187–202. https://doi.org/10.1111/j.2517-6161.1972.tb00899.x, https://www.jstor.org/stable/2985181
Craig, E., Zhong, C., & Tibshirani, R. (2021). Survival stacking: Casting survival analysis as a classification problem (pp. 1–17). arXiv:abs/2107.13480
Dai, W., Jiang, X., Bonomi, L., Li, Y., Xiong, H., & Ohno-Machado, L. (2020). VERTICOX: Vertically distributed cox proportional hazards model using the alternating direction method of multipliers. IEEE Transactions on Knowledge and Data Engineering, 4347(c), 1. https://doi.org/10.1109/tkde.2020.2989301
Faraggi, D., & Simon, R. (1995). A neural network model for survival data. Statistics in Medicine, 14(1), 73–82. https://doi.org/10.1002/sim.4780140108
Gensheimer, M. F., Narasimhan, B. (2019). A scalable discrete-time survival model for neural networks. PeerJ, 1–19. https://doi.org/10.7717/peerj.6257
Gore, S. M., Pocock, S. J., & Kerr, G. R. (1984). Regression models and non-proportional hazards in the analysis of breast cancer survival author. Journal of the Royal Statistical Society. Series C (Applied Statistics), 33(2), 176–195.
Graf, E., Schmoor, C., Sauerbrei, W., & Schumacher, M. (1999). Assessment and comparison of prognostic classification schemes for survival data. Statistics in Medicine, 18(17–18), 2529–2545. https://doi.org/10.1002/(sici)1097-0258(19990915/30)18:17/18<2529::aid-sim274>3.0.co;2-5
Katzman, J. L., Shaham, U., Cloninger, A., Bates, J., Jiang, T., & Kluger, Y. (2018). DeepSurv: Personalized treatment recommender system using a Cox proportional hazards deep neural network. BMC Medical Research Methodology, 18(1), 1–11. https://doi.org/10.1186/s12874-018-0482-1
Kelly, C. J., Karthikesalingam, A., Suleyman, M., Corrado, G., & King, D. (2019). Key challenges for delivering clinical impact with artificial intelligence. BMC Medicine, 17(1), 1–9. https://doi.org/10.1186/s12916-019-1426-2
Kvamme, H., & Borgan, O. (2019). Continuous and discrete-time survival prediction with neural networks.
Kvamme, H., Borgan, O., & Scheel, I. (2019). Time-to-event prediction with neural networks and cox regression. Journal of Machine Learning Research, 20, 1–30.
Li, H., Boimel, P., Janopaul-Naylor, J., Zhong, H., Xiao, Y., Ben-Josef, E., & Fan, Y. (2019). Deep convolutional neural networks for imaging data based survival analysis of rectal cancer (pp. 1–4).
Li, T., Sahu, A. K., Zaheer, M., Sanjabi, M., Talwalkar, A., & Smith, V. (2018). Federated optimization in heterogeneous networks. arxiv:abs/1812.06127
Lu, C. L., Wang, S., Ji, Z., Wu, Y., Xiong, L., Jiang, X., & Ohno-Machado, L. (2015). WebDISCO: A web service for distributed cox model learning without patient-level data sharing. Journal of the American Medical Informatics Association, 22(6), 1212–1219. https://doi.org/10.1093/jamia/ocv083
Luck, M., Sylvain, T., Cardinal, H., Lodi, A., & Bengio, Y. (2017). Deep learning for patient-specific kidney graft survival analysis (Nips 2017). arxiv:abs/1705.10245
McMahan, H. B., Moore, E., Ramage, D., Hampson, S., & Agüera y Arcas, B. (2017). Communication-efficient learning of deep networks from decentralized data. In Proceedings of the 20th International Conference on Artificial Intelligence and Statistics, AISTATS 2017 (Vol. 54).
Paszke, A., Gross, S., Massa, F., Lerer, A., Bradbury, J., Chanan, G., Killeen, T., Lin, Z., Gimelshein, N., Antiga, L., Desmaison, A., Köpf, A., Yang, E., DeVito, Z., Raison, M., Tejani, A., Chilamkurthy, S., Steiner, B., Fang, L., Bai, J., & Chintala, S. (2019). PyTorch: An imperative style, high-performance deep learning library. Advances in Neural Information Processing Systems, 32(NeurIPS).
Rieke, N., Hancox, J., Li, W., Milletarì, F., Roth, H. R., Albarqouni, S., Bakas, S., Galtier, M. N., Landman, B. A., Maier-Hein, K., Ourselin, S., Sheller, M., Summers, R. M., Trask, A., Xu, D., Baust, M., & Cardoso, M. J. (2020). The future of digital health with federated learning. NPJ Digital Medicine, 3(1), 1–7. https://doi.org/10.1038/s41746-020-00323-1
Wang, P., Li, Y., & Reddy, C. K. (2019). Machine learning for survival analysis: A survey. ACM Computing Surveys, 51(6). https://doi.org/10.1145/3214306
Wiens, J., Saria, S., Sendak, M., Ghassemi, M., Liu, V. X., Doshi-Velez, F., Jung, K., Heller, K., Kale, D., Saeed, M., Ossorio, P. N., Thadaney-Israni, S., & Goldenberg, A. (2019). Do no harm: A roadmap for responsible machine learning for health care. Nature Medicine, 25(September). https://doi.org/10.1038/s41591-019-0548-6
Yang, L., Beliard, C., & Rossi, D.: Heterogeneous data-aware federated learning (1).
Zhu, X., Yao, J., & Huang, J. (2017). Deep convolutional neural network for survival analysis with pathological images. In Proceedings—2016 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016 (Vol. 2, pp. 544–547). https://doi.org/10.1109/BIBM.2016.7822579
Zhu, X., Yao, J., Zhu, F., & Huang, J. (2017). WSISA: Making survival prediction from whole slide histopathological images. In Proceedings—30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017 (pp. 6855–6863). https://doi.org/10.1109/CVPR.2017.725
Acknowledgements
This work was supported by the UKRI CDT in AI for Healthcare http://ai4health.io (Grant No. EP/S023283/1).
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Zhang, D.K., Toni, F., Williams, M. (2023). A Federated Cox Model with Non-proportional Hazards. In: Shaban-Nejad, A., Michalowski, M., Bianco, S. (eds) Multimodal AI in Healthcare. Studies in Computational Intelligence, vol 1060. Springer, Cham. https://doi.org/10.1007/978-3-031-14771-5_12
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