Sensing and Signalling in Diatom Responses to Abiotic Cues

Jaubert, Marianne; Duchêne, Carole; Kroth, Peter G.; Rogato, Alessandra; Bouly, Jean-Pierre; Falciatore, Angela

doi:10.1007/978-3-030-92499-7_21

Marianne Jaubert³,
Carole Duchêne³,
Peter G. Kroth⁴,
Alessandra Rogato^5,6,
Jean-Pierre Bouly³ &
…
Angela Falciatore³

2067 Accesses
3 Citations

Abstract

Diatoms are prominent microalgae that proliferate in a wide range of aquatic environments. Still, fundamental questions regarding their biology, such as how diatoms sense and respond to environmental variations, remain largely unanswered. In recent years, advances in the molecular and cell biology of diatoms and the increasing availability of genomic data have made it possible to explore sensing and signalling pathways in these algae. Pivotal studies of photosensory perception have highlighted the great capacity of diatoms to accurately detect environmental variations by sensing differential light signals and adjust their physiology accordingly. The characterization of photoreceptors and light-dependent processes described in this review, such as plastid signalling and diel regulation, is unveiling sensing systems which are unique to these algae, reflecting their complex evolutionary history and adaptation to aquatic life. Here, we also describe putative sensing components involved in the responses to nutrient, osmotic changes, and fluid motions. Continued elucidation of the molecular systems processing endogenous and environmental cues and their interactions with other biotic and abiotic stress signalling pathways is expected to greatly increase our understanding of the mechanisms controlling the abundance and distribution of the highly diverse diatom communities in marine ecosystems.

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Abbreviations

AUREO:: aureochrome
bHLH:: basic helix–loop–helix domain
BV:: biliverdin
CA:: carbonic anhydrase
CCREs:: CO₂/cAMP-responsive elements
CPD:: cyclobutane pyrimidine dimer
CPF:: cryptochrome/photolyase family
CRY:: cryptochrome
DCMU:: 3-(3′, 4′-dichlorophenyl)-1, 1-dimethylurea
DPH:: diatom phytochrome
FAD:: flavin adenine dinucleotide
FMN:: flavin-mononucleotide
FR:: far-red light
MTHF:: 5,10-methenyltetrahydrofolic acid
N:: nitrogen
NAGK:: N-acetyl-L-glutamate kinase
NAT :: natural antisense transcript
ncRNA:: non coding RNA
NPF:: nitrate transporter 1/peptide transporter family
P:: phosphorus
PAS:: Per-Arnt-Sim domain (from “period”, “aryl hydrocarbon receptor nuclear transporter” and “single-minded” proteins)
PCM:: photosensory core module
PHR:: photolyase-related domain
PHY:: phytochrome
PL:: photolyase
R:: red light
ROS:: reactive oxygen species
Ser/Thr:: serine/threonine
snRNA:: small nuclear RNA
sRNA:: small RNA
TE:: transposable element
TF:: transcription factor
TOR:: target of rapamycin
UV:: ultra-violet

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Acknowledgments

We thank Alessandro Manzotti for support for graphic design. Research was supported by funding from the Fondation Bettencourt-Schueller (Coups d’élan pour la recherche française-2018 to A.F.), the grant “DYNAMO” (ANR-11-LABX-0011-01- to A.F.), and the ANR grant CLIMA-CLOCK (ANR-20-CE20-0024 TO A.F.), the Betty Moore Foundation Marine Microbial Initiative (grant GBMF4981.01 to M.J.), a DFG grant (KR1661/19-1) to P.G.K. and the international ANR-DFG Grant “DiaRhythm” to A.F and P.G.K. (KR1661/20-1)

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Laboratoire de Biologie du chloroplaste et perception de la lumière chez les microalgues, UMR7141, Centre national de la recherche scientifique, Sorbonne Université, Institut de Biologie Physico-Chimique, Paris, France
Marianne Jaubert, Carole Duchêne, Jean-Pierre Bouly & Angela Falciatore
Fachbereich Biologie, Universität Konstanz, Konstanz, Germany
Peter G. Kroth
Integrative Marine Ecology Department, Stazione Zoologica Anton Dohrn, Naples, Italy
Alessandra Rogato
Institute of Biosciences and BioResources, IBBR/CNR, Naples, Italy
Alessandra Rogato

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Laboratoire de Biologie du chloroplaste et perception de la lumière chez les microalgues, UMR7141, Centre national de la recherche scientifique, Sorbonne Université Institut de Biologie Physico-Chimique, Paris, France
Angela Falciatore
School of Environmental Sciences, University of East Anglia Norwich Research Park, Norwich, UK
Thomas Mock

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Jaubert, M., Duchêne, C., Kroth, P.G., Rogato, A., Bouly, JP., Falciatore, A. (2022). Sensing and Signalling in Diatom Responses to Abiotic Cues. In: Falciatore, A., Mock, T. (eds) The Molecular Life of Diatoms. Springer, Cham. https://doi.org/10.1007/978-3-030-92499-7_21

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