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Detecting Early Signs of Insufficiency in COVID-19 Patients from CBC Tests Through a Supervised Learning Approach

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Intelligent Systems (BRACIS 2021)

Abstract

One important task in the COVID-19 clinical protocol involves the constant monitoring of patients to detect possible signs of insufficiency, which may eventually rapidly progress to hepatic, renal or respiratory failures. Hence, a prompt and correct clinical decision not only is critical for patients prognosis, but also can help when making collective decisions regarding hospital resource management. In this work, we present a network-based high-level classification technique to help healthcare professionals on this activity, by detecting early signs of insufficiency based on Complete Blood Count (CBC) test results. We start by building a training dataset, comprising both CBC and specific tests from a total of 2,982 COVID-19 patients, provided by a Brazilian hospital, to identify which CBC results are more effective to be used as biomarkers for detecting early signs of insufficiency. Basically, the trained classifier measures the compliance of the test instance to the pattern formation of the network constructed from the training data. To facilitate the application of the technique on larger datasets, a network reduction option is also introduced and tested. Numerical results show encouraging performance of our approach when compared to traditional techniques, both on benchmark datasets and on the built COVID-19 dataset, thus indicating that the proposed technique has potential to help medical workers in the severity assessment of patients. Especially those who work in regions with scarce material resources.

This work was carried out at the Center for Artificial Intelligence (C4AI-USP), with support by the São Paulo Research Foundation (FAPESP) under grant number: 2019/07665-4 and by the IBM Corporation. This work is also supported in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) - Finance Code 001, FAPESP under grant numbers 2015/50122-0, the Brazilian National Council for Scientific and Technological Development (CNPq) under grant number 303199/2019-9, and the Ministry of Science and Technology of China under grant number: G20200226015.

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References

  1. Anghinoni, L., Zhao, L., Ji, D., Pan, H.: Time series trend detection and forecasting using complex network topology analysis. Neural Netw. 117, 295–306 (2019)

    Article  Google Scholar 

  2. Beck, B.R., Shin, B., Choi, Y., Park, S., Kang, K.: Predicting commercially available antiviral drugs that may act on the novel coronavirus (SARS-CoV-2) through a drug-target interaction deep learning model. Comput. Struct. Biotechnol. J. 18, 784–790 (2020)

    Article  Google Scholar 

  3. Brandes, U.: A faster algorithm for betweenness centrality. J. Math. Sociol. 25(2), 163–177 (2001)

    Article  Google Scholar 

  4. Breiman, L.: Bagging predictors. Mach. Learn. 24(2), 123–140 (1996)

    MATH  Google Scholar 

  5. Breiman, L.: Random forests. Mach. Learn. 45(1), 5–32 (2001)

    Article  Google Scholar 

  6. Carneiro, M.G., Zhao, L.: Organizational data classification based on the importance concept of complex networks. IEEE Trans. Neural Netw. Learn. Syst. 29(8), 3361–3373 (2017)

    Google Scholar 

  7. Chen, D., Lü, L., Shang, M.S., Zhang, Y.C., Zhou, T.: Identifying influential nodes in complex networks. Phys. A: Stat. Mech. Appl. 391(4), 1777–1787 (2012)

    Article  Google Scholar 

  8. Colliri, T., Ji, D., Pan, H., Zhao, L.: A network-based high level data classification technique. In: 2018 International Joint Conference on Neural Networks (IJCNN), pp. 1–8. IEEE (2018)

    Google Scholar 

  9. Csardi, G., Nepusz, T., et al.: The Igraph software package for complex network research. Int. J. Complex Syst. 1695(5), 1–9 (2006)

    Google Scholar 

  10. Fapesp: Research data metasearch. https://repositorio.uspdigital.usp.br/handle/item/243. Accessed 1 Feb 2021

  11. Freund, Yoav, Schapire, Robert E..: A desicion-theoretic generalization of on-line learning and an application to boosting. In: Vitányi, Paul (ed.) EuroCOLT 1995. LNCS, vol. 904, pp. 23–37. Springer, Heidelberg (1995). https://doi.org/10.1007/3-540-59119-2_166

    Chapter  Google Scholar 

  12. Gelman, A., Hill, J.: Data Analysis Using Regression and Multilevel Hierarchical Models, vol. 1. Cambridge University Press, New York (2007)

    Google Scholar 

  13. Hinton, G.E.: Connectionist learning procedures. Artif. Intell. 40(1–3), 185–234 (1989)

    Article  Google Scholar 

  14. Lichman, M.: UCI machine learning repository (2013). http://archive.ics.uci.edu/ml

  15. Metsky, H.C., Freije, C.A., Kosoko-Thoroddsen, T.S.F., Sabeti, P.C., Myhrvold, C.: CRISPR-based surveillance for COVID-19 using genomically-comprehensive machine learning design. BioRxiv (2020)

    Google Scholar 

  16. Pearson, K.: Note on regression and inheritance in the case of two parents. Proc. Royal Soc. London 58(347–352), 240–242 (1895)

    Google Scholar 

  17. Pedregosa, F., et al.: Scikit-learn: machine learning in Python. J. Mach. Learn. Res. 12, 2825–2830 (2011)

    MathSciNet  MATH  Google Scholar 

  18. Rish, I.: An empirical study of the Naive Bayes classifier. In: IJCAI 2001 Workshop on Empirical Methods in Artificial Intelligence, vol. 3(22) (2001), IBM New York

    Google Scholar 

  19. Safavin, S.R., Landgrebe, D.: A survey of decision tree classifier methodology. IEEE Trans. Syst., Man, Cybern. 21(3), 660–674 (1991)

    Google Scholar 

  20. Secr. Saude SP: prefeitura.sp.gov.br/cidade/secretarias/saude/vigilancia\(\_\)em\(\_\)saude/. Accessed 9 May 2021

    Google Scholar 

  21. Shan, F., et al.: Lung infection quantification of COVID-19 in CT images with deep learning. arXiv preprint arXiv:2003.04655 (2020)

  22. Silva, T.C., Zhao, L.: Network-based high level data classification. IEEE Trans. Neural Netw. Learn. Syst. 23(6), 954–970 (2012)

    Article  Google Scholar 

  23. Strogatz, S.H.: Exploring complex networks. Nature 410(6825), 268–276 (2001)

    Article  Google Scholar 

  24. Valejo, A., Ferreira, V., Fabbri, R., Oliveira, M.C.F.d., Lopes, A.D.A.: A critical survey of the multilevel method in complex networks. ACM Comput. Surv. (CSUR) 53(2), 1–35 (2020)

    Google Scholar 

  25. Vapnik, V.N.: The Nature of Statistical Learning Theory. Springer, New York (2000). https://doi.org/10.1007/978-1-4757-3264-1

  26. Yan, L., et al.: An interpretable mortality prediction model for COVID-19 patients. Nat. Mach. Intell. 2(5), 1–6 (2020)

    Google Scholar 

  27. Zoabi, Y., Deri-Rozov, S., Shomron, N.: Machine learning-based prediction of COVID-19 diagnosis based on symptoms. npj Digital Med. 4(1), 1–5 (2021)

    Google Scholar 

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Colliri, T., Minakawa, M., Zhao, L. (2021). Detecting Early Signs of Insufficiency in COVID-19 Patients from CBC Tests Through a Supervised Learning Approach. In: Britto, A., Valdivia Delgado, K. (eds) Intelligent Systems. BRACIS 2021. Lecture Notes in Computer Science(), vol 13074. Springer, Cham. https://doi.org/10.1007/978-3-030-91699-2_4

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  • DOI: https://doi.org/10.1007/978-3-030-91699-2_4

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