Abstract
In this chapter we argue that the multiplicity of subagents is a typical feature of agency which is necessary for a higher-level agent’s reliable self-construction, robustness, and adaptability. The composite organization allows for a dialectic balance between interests and functions of the whole and its parts. We argue that subagents are semi-autonomous and coexist in a partially cooperative, partially antagonistic unity that evolves over time. They generate adaptive variations of structures and functions that help organisms to improve performance and/or survive severe environmental changes. Subagents interact at both physiological and evolutionary time scales. One interaction strategy is guiding semiogenesis, which happens when one subagent provides scaffolding that facilitates, represses, or re-directs the evolution or learning of another subagent . Composite agents emerge either via integration of homogenous components, i.e. reproduction of identical low-level agents without separation followed by specialization, or symbiogenesis, i.e. integration of diverse low-level agents into a symbiotic community followed by co-adaptation. The long-term future fate of specific composite agents is fundamentally uncertain, and this gives rise to a “mixed identity”. In some cases, agents can acquire subagents (e.g., genes or symbionts) from other organisms. Some subagents may break free, infect other agents, or kill their host organism .
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Notes
- 1.
Strand is a single chain of nucleotides in DNA, whereas the DNA helix (in a chromosome) is formed by two reverse-complementary strands of DNA bound to each other like two sides of a ladder.
- 2.
See also Chap. 8.
- 3.
See Chap. 4 for discussion of the origin of life.
- 4.
For instance, Gödel sentences in a formal system are observed as true but cannot be deduced from axioms (Baas & Emmeche, 1997).
References
Baas, N. A. (2006). Hyperstructures as abstract matter. Advances in Complex Systems, 9(3), 157–182.
Baas, N. A., & Emmeche, C. (1997). On emergence and explanation. Intellectica, 2(25), 67–83.
Baldwin, M. J. (1896). A new factor in evolution. American Naturalist, 30, 441–451.
Barton, E. S., White, D. W., Cathelyn, J. S., Brett-McClellan, K. A., Engle, M., Diamond, M. S., et al. (2007). Herpesvirus latency confers symbiotic protection from bacterial infection. Nature, 447(7142), 326–329.
Bonavita, V., & De Simone, R. (2011). Pain as an evolutionary necessity. Neurological Sciences, 32, 61–66.
Bright, M., & Bulgheresi, S. (2010). A complex journey: Transmission of microbial symbionts. Nature Reviews Microbiology, 8(3), 218–230.
Bruni, L. E., & Giorgi, F. (2016). Multi-level semiosis: A paradigm of emergent innovation. Biosemiotics, 9(3), 307–318.
Chen, X., Xu, H., Yuan, P., Fang, F., Huss, M., Vega, V. B., et al. (2008). Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell, 133(6), 1106–1117.
Core, A., Runckel, C., Ivers, J., Quock, C., Siapno, T., Denault, S., et al. (2012). A new threat to honey bees, the parasitic phorid fly Apocephalus borealis. PLoS One, 7(1), e29639.
ENCODE Consortium. (2012). An integrated encyclopedia of DNA elements in the human genome. Nature, 489(7414), 57–74.
Gilbert, S. F., Sapp, J., & Tauber, A. I. (2012). A symbiotic view of life: We have never been individuals. The Quarterly Review of Biology, 87(4), 325–341.
Ginsburg, S., & Jablonka, E. (2019). The evolution of the sensitive soul. Learning and the origin of consciousness. MIT Press.
Herculano-Houzel, S. (2009). The human brain in numbers: A linearly scaled-up primate brain. Frontiers in Human Neuroscience, 3, 31.
Ho, B., Baryshnikova, A., & Brown, G. W. (2018). Unification of protein abundance datasets yields a quantitative Saccharomyces cerevisiae proteome. Cell Systems, 6(2), 192–205. e193.
Hoffmeyer, J., & Stjernfelt, F. (2016). The great chain of semiosis. Investigating the steps in the evolution of semiotic competence. Biosemiotics, 9(1), 7–29.
Honegger, R. (2012). The symbiotic phenotype of lichen-forming Ascomycetes and their endo- and epibionts. In B. Hock (Ed.), Fungal associations (The Mycota) (Vol. IX, 2nd ed., pp. 287–339). Springer.
Ingram, W. M., Goodrich, L. M., Robey, E. A., & Eisen, M. B. (2013). Mice infected with low-virulence strains of Toxoplasma gondii lose their innate aversion to cat urine, even after extensive parasite clearance. PLoS One, 8(9), e75246.
Kikuchi, Y., Hayatsu, M., Hosokawa, T., Nagayama, A., Tago, K., & Fukatsu, T. (2012). Symbiont-mediated insecticide resistance. Proceedings of the National Academy of Science of the U.S.A., 109(22), 8618–8622.
Koonin, E. V., & Galperin, M. Y. (2003). Sequence – evolution – function: Computational approaches in comparative genomics. Kluwer Academic.
Krishnan, H. R., Sakharkar, A. J., Teppen, T. L., Berkel, T. D., & Pandey, S. C. (2014). The epigenetic landscape of alcoholism. International Review of Neurobiology, 115, 75–116.
Lederberg, J. (1951). Inheritance, variation, and adaptation. In C. H. Werkman & P. W. Wilson (Eds.), Bacterial physiology (pp. 67–100). Academic.
Lemke, J. L. (2000). Opening up closure: Semiotics across scales. Annals of the New York Academy of Sciences, 901, 100–111.
Lodish, H., Berk, A., Zipursky, S. L., Matsudaira, P., & Darnell, J. (2000). Molecular cell biology (4th ed.). W. H. Freeman and.
Lorenz, K. (2002 [1963]). On aggression (M. K. Wilson, Trans.). Routledge.
Luongo, T. S., Lambert, J. P., Yuan, A., Zhang, X., Gross, P., Song, J., et al. (2015). The mitochondrial calcium uniporter matches energetic supply with cardiac workload during stress and modulates permeability transition. Cell Reports, 12(1), 23–34.
Margulis, L. (1998). Symbiotic planet: A new look at evolution. Basic Books.
Maynard Smith, J., & Szathmáry, E. (1995). The major transitions in evolution. W.H. Freeman Spektrum.
McCulloch, W. (1945). A heterarchy of values determined by the topology of nervous nets. Bulletin Mathematical Biophysics, 7, 89–93.
Mikhailovsky, G. (2018a). From identity to uniqueness: The emergence of increasingly higher levels of hierarchy in the process of the matter evolution. Entropy, 20(533), 1–18.
Mikhailovsky, G. (2018b). General evolution of the universe driven by attraction and four levels of biological evolution as its essential part. Journal of Evolutionary Science, 1(1), 1–13.
Minsky, M. (1986). The society of mind. Simon and Schuster.
Murchison, E. P., Wedge, D. C., Alexandrov, L. B., Fu, B., Martincorena, I., Ning, Z., et al. (2014). Transmissible dog cancer genome reveals the origin and history of an ancient cell lineage. Science, 343(6169), 437–440.
O’Malley, M. A., & Koonin, E. V. (2011). How stands the tree of life a century and a half after the origin? Biology Direct, 6, 32.
Pigliucci, M., & Müller, G. B. (2010). Elements of an extended evolutionary synthesis. In M. Pigliucci & G. B. Müller (Eds.), Evolution – The extended synthesis. MIT Press.
Plattner, H. (2015). Molecular aspects of calcium signalling at the crossroads of unikont and bikont eukaryote evolution--The ciliated protozoan Paramecium in focus. Cell Calcium, 57(3), 174–185.
Puigbo, P., Wolf, Y. I., & Koonin, E. V. (2013). Seeing the tree of life behind the phylogenetic forest. BMC Biology, 11, 46.
Ramoino, P., Beltrame, F., Diaspro, A., & Fato, M. (1996). Time-variant analysis of organelle and vesicle movement during phagocytosis in Paramecium primaurelia by means of fluorescence confocal laser scanning microscopy. Microscopy Research and Technique, 35(5), 377–384.
Russell, R. J., Scott, C., Jackson, C. J., Pandey, R., Pandey, G., Taylor, M. C., et al. (2011). The evolution of new enzyme function: Lessons from xenobiotic metabolizing bacteria versus insecticide-resistant insects. Evolutionary Applications, 4(2), 225–248.
Schieber, M. (1990). How might the motor cortex individuate movements? Trends in Neuroscience, 13(11), 440–444.
Schlosser, G. (2004). The role of modules in development and evolution. In G. Schlosser & G. P. Wagner (Eds.), Modularity in development and evolution (pp. 519–582). University of Chicago Press.
Schmalhausen, I. I. (1949). Factors of evolution: The theory of stabilizing selection. Blakiston.
Schott, G. D. (1993). Penfield’s homunculus: A note on cerebral cartography. Journal of Neurology, Neurosurgery, and Psychiatry, 56(4), 329–333.
Scott, D. (2014). Gilbert Simondon’s psychic and collective individuation: A critical introduction and guide. Edinburgh University Press.
Seckbach, J. (Ed.). (2006). Symbiosis: Mechanisms and model systems. Kluwer Academic Publishers.
Sender, R., Fuchs, S., & Milo, R. (2016). Revised estimates for the number of human and bacteria cells in the body. PLoS Biology, 14(8), e1002533.
Sharov, A. A. (2017). Composite agency: Semiotics of modularity and guiding interactions. Biosemiotics, 10(2), 157–178.
Szathmáry, E., & Maynard Smith, J. (1995). The major evolutionary transitions. Nature, 374, 227–232.
Treangen, T. J., & Salzberg, S. L. (2011). Repetitive DNA and next-generation sequencing: Computational challenges and solutions. Nature Reviews Genetics, 13(1), 36–46.
Turchin, V. F. (1977). The phenomenon of science. Columbia University Press.
Turner, J. S. (2000). The extended organism. The physiology of animal-built structures. Harvard University Press.
Vander Elst, N., & Meyer, E. (2018). Potential therapeutic application of bacteriophages and phage-derived endolysins as alternative treatment of bovine mastitis. Vlaams Diergeneeskundig Tijdschrift, 87(4), 181–186.
Villarreal, L. P. (2009). Origin of group identity. Viruses, addiction and cooperation. Springer.
Vinay, D. S., Ryan, E. P., Pawelec, G., Talib, W. H., Stagg, J., Elkord, E., et al. (2015). Immune evasion in cancer: Mechanistic basis and therapeutic strategies. Seminars in Cancer Biology, 35(Suppl), S185–S198.
Waddington, C. H. (1968). Towards a theoretical biology. Nature, 218(5141), 525–527.
Wagner, G. P. (1996). Homologues, natural kinds and the evolution of modularity. American Zoologist, 36, 36–43.
West-Eberhard, M. J. (2003). Developmental plasticity and evolution. Oxford University Press.
Author information
Authors and Affiliations
Rights and permissions
Copyright information
© 2021 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this chapter
Cite this chapter
Sharov, A., Tønnessen, M. (2021). Composite Agency. In: Semiotic Agency. Biosemiotics, vol 25. Springer, Cham. https://doi.org/10.1007/978-3-030-89484-9_10
Download citation
DOI: https://doi.org/10.1007/978-3-030-89484-9_10
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-89483-2
Online ISBN: 978-3-030-89484-9
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)