Abstract
The appreciation of the scientific value of biospecimens for current and future basic and translational research is increasingly being recognised. While biobanks in high-income settings are well established, the number of facilities in low- and middle-income countries is growing, albeit at a slower pace. There exist several challenges for biological research centres, which operate in low resource settings, and these need to be taken into consideration when seeking to apply consensus in the biobanking discipline. The overall cost of custodianship should be taken into account, so as not to create, and indirectly promote, exclusivity, exploitation and knowledge silos. Therefore, standards and tools for biospecimen quality management must be democratised for biorepositories in a variety of settings to have a truly global impact on research.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Müller, H., Dagher, G., Loibner, M., Stumptner, C., Kungl, P., & Zatloukal, K. (2020) Biobanks for life sciences and personalized medicine: Importance of standardization, biosafety, biosecurity, and data management. Current Opinion in Biotechnology, 65, 45–51. https://doi.org/10.1016/j.copbio.2019.12.004.
Gainotti, S., Torreri, P., Wang, C. M., Reihs, R., Mueller, H., Heslop, E., Roos, M., Badowska, D. M., de Paulis, F., Kodra, Y., Carta, C., Lopez Martín, E., Rangel Miller, V., Filocamo, M., Mora, M., Thompson, M., Rubinstein, Y., Posada de la Paz, M., Monaco, L., & Taruscio, D. (2018). The RD-connect registry & biobank finder: A tool for sharing aggregated data and metadata among rare disease researchers. European Journal of Human Genetics, 26(5), 631–643. https://doi.org/10.1038/s41431-017-0085-z
Zatloukal, K., Stumptner, C., Kungl, P., & Müller, H. (2018). Biobanks in personalized medicine, expert. Review of Precision Medicine and Drug Development, 3(4), 265–273. https://doi.org/10.1080/23808993.2018.1493921
Müller, H., et al. (2015). State-of-the-art and future challenges in the integration of biobank catalogues. In A. Holzinger, C. Röcker, M. Ziefle (Eds.), Smart health. Lecture notes in computer science (Vol. 8700). Cham: Springer. https://doi.org/10.1007/978-3-319-16226-3_11
Müller, H., Malservet, N., Quinlan, P., Reihs, R., Penicaud, M., Chami, A., Zatloukal, K., & Dagher, G. (2017). From the evaluation of existing solutions to an all-inclusive package for biobanks. Health and Technology, 7(1), 89–95. https://doi.org/10.1007/s12553-016-0175-x
Gasmelseed, N., Elsir, A. A., DeBlasio, P., & Biunno, I. (2012). Sub-Saharan centralized biorepository for genetic and genomic research. Science of the Total Environment, 423, 210–213. https://doi.org/10.1016/j.scitotenv.2010.07.054
Vaught, J. (2016). Biobanking and biosecurity initiatives in Africa. Biopreservation and Biobanking, 14(5), 355–356. https://doi.org/10.1089/bio.2016.29009.jjv
Soo, C. C., Mukomana, F., Hazelhurst, S., & Ramsay, M. (2017). Establishing an academic biobank in a resource-challenged environment. South African Medical Journal, 107(6), 486–492. https://doi.org/10.7196/SAMJ.2017.v107i6.12099
Mendy, M., Caboux, E., Sylla, B., Dillner, J., Chinquee, J., & Wild, C. (2014). BCNet survey participants. Infrastructure and facilities for human biobanking in low- and middle-income countries: A situation analysis. Pathobiology, 81, 252–260. https://doi.org/10.1159/000362093
Mayne, E. S., Croxton, T., Abimiku, A., Joloba, M., Kyobe, S., Beiswanger, C. M., Wideroff, L., Guyer, M., Troyer, J., & Kader, M. (2017). Genes for life: Biobanking for genetic research in Africa. Biopreservation and Biobanking, 15(2), 93–94. https://doi.org/10.1089/bio.2017.0007
Munung, N. S., Mayosi, B. M., & de Vries, J. (2017). Equity in international health research collaborations in Africa: Perceptions and expectations of African researchers. PLoS One, 12(10), e0186237. https://doi.org/10.1371/journal.pone.0186237
Akinyemi, R. O., Akinwande, K., Diala, S., Adeleye, O., Ajose, A., Issa, K., Owusu, D., Boamah, I., Yahaya, I. S., Jomoh, A. O., Imoh, L., Fakunle, G., Akpalu, A., Sarfo, F., Wahab, K., Sanya, E., Owolabi, L., Obiako, R., Osaigbovo, G., et al. (2018). Biobanking in a challenging African environment: Unique experience from the SIREN project. Biopreservation and Biobanking, 16(3), 217–232. https://doi.org/10.1089/bio.2017.0113
H3Africa Consortium, Rotimi, C., Abayomi, A., Abimiku, A., Adabayeri, V. M., Adebamowo, C., Adebiyi, E., Ademola, A. D., et al. (2014). Research capacity. Enabling the genomic revolution in Africa. Science, 344(6190), 1346–1348. https://doi.org/10.1126/science.1251546
Klingström, T., Mendy, M., Meunier, D., Berger, A., Reichel, J., Christoffels, A., Bendou, H., Swanepoel, C., Smit, L., Mckellar-Basset, C., & Bongcam-Rudloff, E. (2016). Supporting the development of biobanks in low and medium income countries. 2016 IST-Africa week conference 2016 May 11, 1–10. https://doi.org/10.1109/ISTAFRICA.2016.7530672
Abayomi, A., Gevao, S., Conton, B., Deblasio, P., & Katz, R. (2016). African civil society initiatives to drive a biobanking, biosecurity and infrastructure development agenda in the wake of the West African Ebola outbreak. The Pan African Medical Journal, 24(270). https://doi.org/10.11604/pamj.2016.24.270.8429
Hardy, B. J., Séguin, B., Goodsaid, F., & Jimenez-Sanchez-G., Singer, P.A., Daar, A.S. (2008). The next steps for genomic medicine: Challenges and opportunities for the developing world. Nature Reviews Genetics, 9, 23–27. https://doi.org/10.1038/nrg2444
Christoffels, A., & Abayomi, A. (2020). Careful governance of African biobanks. The Lancet, 395, 29–30. https://doi.org/10.1016/S0140-6736(19)32624-8
Sepulveda, J. L., & Young, D. S. (2013). The ideal laboratory information system. Archives of Pathology & Laboratory Medicine, 137(8), 1129–1140. https://doi.org/10.5858/arpa.2012-0362-RA
Kyobe, S., Musinguzi, H., Lwanga, N., Kezimbira, D., Kigozi, E., Katabazi, F.A., Wayengera, M., Joloba, M.L., Abayomi, E.A., Swanepoel, C., Abimiku, A., Croxton, T., Ozumba, P., Thankgod, A., Cristoffels, A., van Zyl, L., Mayne, E.S., Kader, M., et al. H3Africa Biorepository PI Working Group. (2017). Selecting a laboratory information management system for biorepositories in low- and middle-income countries: The H3Africa experience and lessons learned. Biopreservation and Biobanking, 15(2), 111–115. https://doi.org/10.1089/bio.2017.0006
Bendou, H., Sizani, L., Reid, T., Swanepoel, C., Ademuyiwa, T., Merino-Martinez, R., Müller, H., Abayomi, A., & Christoffels, A. (2017). Baobab laboratory information management system: Development of an open-source laboratory information management system for biobanking. Biopreservation and Biobanking, 15(2), 116–120. https://doi.org/10.1089/bio.2017.0014
Aldosari, B., Gadi, H. A., Alanazi, A., & Househ, M. (2017). Surveying the influence of laboratory information system: An end-user perspective. Informatics in Medicine Unlocked, 9, 200–209. https://doi.org/10.1016/j.imu.2017.09.002
Argento, N. Institutional ELN/LIMS deployment: Highly customizable ELN/LIMS platform as a cornerstone of digital transformation for life sciences research institutes. EMBO Rep. 2020;21(3), e49862. https://doi.org/10.15252/embr.201949862
Myers, C., Swadley, M., & Carter, A. B. (2018). Laboratory information systems and instrument software lack basic functionality for molecular laboratories. The Journal of Molecular Diagnostics, 20(5), 591–599. https://doi.org/10.1016/j.jmoldx
Quinlan, P. R., Mistry, G., Bullbeck, H., Carter, A., & CCB Working Group 3. (2014). A data standard for sourcing fit-for-purpose biological samples in an integrated virtual network of biobanks. Biopreservation and Biobanking, 12(3), 184–191. https://doi.org/10.1089/bio.2013.0089
Eklund, N., Andrianarisoa, N. H., van Enckevort, E., Anton, G., Debucquoy, A., Müller, H., Zaharenko, L., Engels, C., Ebert, L., Neumann, M., Geeraert, J., T’Joen, V., Demski, H., Caboux, É., Proynova, R., Parodi, B., Mate, S., van Iperen, E., Merino-Martinez, R., & Silander, K. (2020). Extending the minimum information about BIobank data sharing terminology to describe samples, sample donors, and events. Biopreservation and Biobanking, 18(3), 155–164. https://doi.org/10.1089/bio.2019.0129
Hartman, V., Matzke, L., & Watson, P. H. (2019). Biospecimen complexity and the evolution of biobanks. Biopreservation and Biobanking, 17(3), 264–270. https://doi.org/10.1089/bio.2018.0120
Coppola, L., Cianflone, A., Grimaldi, A. M., Incoronato, M., Bevilacqua, P., Messina, F., Baselice, S., Soricelli, A., Mirabelli, P., & Salvatore, M. (2019). Biobanking in health care: Evolution and future directions. Journal of Translational Medicine, 17(1), 172. https://doi.org/10.1186/s12967-019-1922-3
Acknowledgements
This work was supported by the European Union’s Horizon 2020 research and innovation projects B3Africa (GA No 654404) CY-Biobank (GA No 857122) and HEAP (GA No 874662).
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2022 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this chapter
Cite this chapter
Anderson, D., Bendou, H., Kipperer, B., Zatloukal, K., Müller, H., Christoffels, A. (2022). Software Tools for Biobanking in LMICs. In: Sargsyan, K., Huppertz, B., Gramatiuk, S. (eds) Biobanks in Low- and Middle-Income Countries: Relevance, Setup and Management. Springer, Cham. https://doi.org/10.1007/978-3-030-87637-1_20
Download citation
DOI: https://doi.org/10.1007/978-3-030-87637-1_20
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-87636-4
Online ISBN: 978-3-030-87637-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)