Abstract
Accurate segmentation and labeling of spine-rib are of great importance for clinical spine and rib diagnosis and treatment. In clinical applications, the spine-rib segmentation and labeling are often challenging, as the shape and appearance of vertebrae are complicated. Previous segmentation and labeling methods usually face considerable difficulties when coping with spine CT images with abnormal curvature spines and implanted metal. In this paper, we propose a multi-stage spine-rib segmentation and labeling method that can be applied to various spine-rib CT images. Our proposed method consists of three steps. First, a 3D U-Net is used to obtain a initial segmentation mask of the spine and rib. Then, the subject information, including gender, age, and the shape of the spine and rib, is used for hierarchically selecting the templates with similar physiological structures from the pre-constructed template library. Finally, the segmentation mask and label from the templates are transferred to the subject via rib-guided registration to achieve correction of the initial results. We evaluated the proposed method on a clinical dataset, and obtained significantly better and robust performance than the state-of-the-art method.
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References
Ben Ayed, I., Punithakumar, K., Minhas, R., Joshi, R., Garvin, G.J.: Vertebral body segmentation in MRI via convex relaxation and distribution matching. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012. LNCS, vol. 7510, pp. 520–527. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-33415-3_64
Lecron, F., Boisvert, J., Mahmoudi, S., Labelle, H., Benjelloun, M.: Fast 3D spine reconstruction of postoperative patients using a multilevel statistical model. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012. LNCS, vol. 7511, pp. 446–453. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-33418-4_55
Burns, J.E.: Imaging of the spine: a medical and physical perspective. In: Li, S., Yao, J. (eds.) Spinal Imaging and Image Analysis. LNCVB, vol. 18, pp. 3–29. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-12508-4_1
Yao, J., Burns, J.E., Munoz, H., Summers, R.M.: Detection of vertebral body fractures based on cortical shell unwrapping. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012. LNCS, vol. 7512, pp. 509–516. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-33454-2_63
Forsberg, D., Lundström, C., Andersson, M., Vavruch, L., Tropp, H., Knutsson, H.: Fully automatic measurements of axial vertebral rotation for assessment of spinal deformity in idiopathic scoliosis. Phys. Med. Biol. 58(6), 1775 (2013)
Knez, D., Likar, B., Pernuš, F., Vrtovec, T.: Computer-assisted screw size and insertion trajectory planning for pedicle screw placement surgery. IEEE Trans. Med. Imaging 35(6), 1420–1430 (2016)
Glocker, B., Feulner, J., Criminisi, A., Haynor, D.R., Konukoglu, E.: Automatic localization and identification of vertebrae in arbitrary field-of-view CT scans. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012. LNCS, vol. 7512, pp. 590–598. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-33454-2_73
Glocker, B., Zikic, D., Konukoglu, E., Haynor, D.R., Criminisi, A.: Vertebrae localization in pathological spine CT via dense classification from sparse annotations. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013. LNCS, vol. 8150, pp. 262–270. Springer, Heidelberg (2013). https://doi.org/10.1007/978-3-642-40763-5_33
Zhan, Y., Maneesh, D., Harder, M., Zhou, X.S.: Robust MR spine detection using hierarchical learning and local articulated model. In: Ayache, N., Delingette, H., Golland, P., Mori, K. (eds.) MICCAI 2012. LNCS, vol. 7510, pp. 141–148. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-33415-3_18
Chen, H., et al.: Automatic localization and identification of vertebrae in Spine CT via a joint learning model with deep neural networks. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 515–522. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24553-9_63
Yang, D., et al.: Deep image-to-image recurrent network with shape basis for automatic vertebra labeling in large-scale 3D CT volumes, 30 July 2019. US Patent 10,366,491
Yang, D., et al.: Automatic vertebra labeling in large-scale 3D CT using deep image-to-image network with message passing and sparsity regularization. In: Niethammer, M., et al. (eds.) IPMI 2017. LNCS, vol. 10265, pp. 633–644. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-59050-9_50
Cui, Z., et al.: TSegNet: an efficient and accurate tooth segmentation network on 3D dental model. Med. Image Anal. 69, 101949 (2021)
Alomari, R.S., Ghosh, S., Koh, J., Chaudhary, V.: Vertebral column localization, labeling, and segmentation. In: Li, S., Yao, J. (eds.) Spinal Imaging and Image Analysis. LNCVB, vol. 18, pp. 193–229. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-12508-4_7
Ullmann, E., Paquette, J.F.P., Thong, W.E., Cohen-Adad, J.: Automatic labeling of vertebral levels using a robust template-based approach. Int. J. Biomed. Imaging 2014, 719520 (2014)
Larhmam, M.A., Benjelloun, M., Mahmoudi, S.: Vertebra identification using template matching modelmp and K-means clustering. Int. J. Comput. Assist. Radiol. Surg. 9(2), 177–187 (2013)
Wu, D.: A learning based deformable template matching method for automatic rib centerline extraction and labeling in CT images. In: 2012 IEEE Conference on Computer Vision and Pattern Recognition, pp. 980–987. IEEE (2012)
Myronenko, A., Song, X.: Point set registration: coherent point drift. IEEE Trans. Pattern Anal. Mach. Intell. 32(12), 2262–2275 (2010)
Avants, B.B., Tustison, N., Song, G.: Advanced normalization tools (ants). Insight J. 2(365), 1–35 (2009)
Sekuboyina, A., et al.: Verse: a vertebrae labelling and segmentation benchmark. arXiv preprint arXiv:2001.09193 (2020)
Lessmann, N., Van Ginneken, B., De Jong, P.A., Išgum, I.: Iterative fully convolutional neural networks for automatic vertebra segmentation and identification. Med. Image Anal. 53, 142–155 (2019)
Payer, C., Stern, D., Bischof, H., Urschler, M.: Coarse to fine vertebrae localization and segmentation with spatial configuration-net and u-net. In: VISIGRAPP (5: VISAPP), pp. 124–133 (2020)
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Jiang, C. et al. (2021). Spine-Rib Segmentation and Labeling via Hierarchical Matching and Rib-Guided Registration. In: Lian, C., Cao, X., Rekik, I., Xu, X., Yan, P. (eds) Machine Learning in Medical Imaging. MLMI 2021. Lecture Notes in Computer Science(), vol 12966. Springer, Cham. https://doi.org/10.1007/978-3-030-87589-3_55
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