Skip to main content

Efficient Model Reduction of Myelinated Compartments as Port-Hamiltonian Systems

  • Conference paper
  • First Online:
Scientific Computing in Electrical Engineering

Part of the book series: Mathematics in Industry ((TECMI,volume 36))

  • 463 Accesses

Abstract

The information is transmitted in neurons through axons, many of whom have myelin-covered sections, whose main purpose is to increase the speed of electrical signal transmission. Modeling the myelinated axons in a realistic way, by maintaining the physical meaning of components may lead to complex systems, described by high-dimensional systems of PDEs, whose solution is computationally demanding. Analysis of larger neuronal circuits including multiple myelinated axons therefore requires the generation of equivalent low-order models to control complexity. Such models must preserve the physical interpretation and properties of the original system including its passivity and stability. The axons’ port-based structure makes them suitable to be modeled as port-Hamiltonian systems. This paper uses a structure-preserving reduction method for port-Hamiltonian systems to reduce the description of a myelinated compartment into a model with comparable accuracy with the previously used vector fitting technique. The reduced system is synthesized into an equivalent passive circuit with no controlled sources and only positive elements, amenable for inclusion in standard neuronal simulators.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. A.C. Antoulas, Approximation of large-scale dynamical systems, in SIAM, vol. 6 (2005)

    Google Scholar 

  2. A. Astolfi, T.C. Ionescu, Moment matching for linear port hamiltonian systems, in 50th IEEE Conference on Decision and Control and European Control Conference, 2011, pp. 7164–7169

    Google Scholar 

  3. A. Astolfi, T.C. Ionescu, Families of moment matching based, structure preserving approximations for linear port Hamiltonian systems. Automatica 49(8), 2424–2434 (2013)

    Article  MathSciNet  Google Scholar 

  4. C. Beattie, S. Gugercin, S. Chaturantabut, Structure-preserving model reduction for nonlinear port-Hamiltonian systems. SIAM J. Sci. Comput. 38(5), B837–B865 (2016)

    Article  MathSciNet  Google Scholar 

  5. C. Beattie, V. Mehrmann, H. Xu, H. Zwart, Linear port-Hamiltonian descriptor systems. Math. Control Signals Syst. 30(4), 17 (2018)

    Google Scholar 

  6. G. Ciuprina et al., Vector fitting based adaptive frequency sampling for compact model extraction on HPC systems. IEEE Trans. Magn. 48(2), 431–434 (2012)

    Article  Google Scholar 

  7. S. Gugercin, C. Beattie, Model reduction by rational interpolation, in Model Reduction and Approximation: Theory and Algorithms (SIAM, New York, 2017), pp. 297–334

    Google Scholar 

  8. J.S. Hesthaven, B.M. Afkham, Structure-preserving model-reduction of dissipative Hamiltonian systems. J. Sci. Comput. 1–19 (2018). https://doi.org/10.1007/s10915-018-0653-6

  9. M.L. Hines, N.T. Carnevale, The NEURON book (Cambridge University Press, Cambridge, 2006). https://neuron.yale.edu/neuron/

    Google Scholar 

  10. A.F. Huxley, A.L. Hodgkin, A quantitative description of membrane current and its application to conduction and excitation in nerve. J. Physiol. 117(4), 500–544 (1952)

    Article  Google Scholar 

  11. D. Ioan, R. Bărbulescu, L.M. Silveira, G. Ciuprina, Reduced order models of myelinated axonal compartments. J. Comput. Neurosci. 47(2–3), 141–166 (2019)

    Article  MathSciNet  Google Scholar 

  12. D. Ioan, G. Ciuprina, R. Barbulescu, Coupled macromodels for the simulation of the saltatory conduction. UPB Sci. Bull. Ser. C 18(3) (2019). ISSN:2286-3540

    Google Scholar 

  13. K.A. Lindsay et al., An introduction to the principles of neuronal modelling, in Modern Techniques in Neuroscience Research (Springer, New York, 1999), pp. 213–306

    Book  Google Scholar 

  14. D.D. Ling, I.M. Elfadel, A block rational Arnoldi algorithm for multipoint passive model-order reduction of multiport RLC networks. ICCAD 97, 66–71 (1997)

    Google Scholar 

  15. R.V. Polyuyga, Model reduction of port-Hamiltonian systems. PhD thesis, University of Groningen, 2010

    Google Scholar 

  16. R.V. Polyuyga, A. van der Schaft, Structure preserving model reduction of port-Hamiltonian systems by moment matching at infinity. Automatica 46(4), 665-672 (2010)

    Article  MathSciNet  Google Scholar 

  17. R.V. Polyuyga, A. van der Schaft, Effort-and flow-constraint reduction methods for structure preserving model reduction of port-Hamiltonian systems. Syst. Control Lett. 61(3), 412-421 (2012)

    Article  MathSciNet  Google Scholar 

  18. L.M. Silveira, J.F. Villena, Circuit synthesis for guaranteed positive sparse realization of passive state-space models. IEEE Trans. Circ. Syst. I 64(6), 1576–1587 (2017)

    Google Scholar 

  19. K.K. Sriperumbudur, U. van Rienen, R. Appali, 3d axonal network coupled to microelectrode arrays: a simulation model to study neuronal dynamics, in 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) (IEEE, New York, 2015), pp. 4700–4704

    Google Scholar 

  20. A.J. van der Schaft, L2-gain and Passivity Techniques in Nonlinear Control (Springer, New York, 2000)

    Book  Google Scholar 

  21. A. van der Schaft, Port-Hamiltonian systems: an introductory survey. Proceedings of the International Congress of Mathematicians, vol. 3, pp. 1339–1365. Citeseer, 2006

    Google Scholar 

Download references

Acknowledgements

This work was partially supported by Portuguese national funds through FCT, Fundação para a Ciência e a Tecnologia, under project UIDB/50021/2020 as well as project PTDC/EEI-EEE/31140/2017.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ruxandra Barbulescu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Barbulescu, R., Ciuprina, G., Ionescu, T., Ioan, D., Silveira, L.M. (2021). Efficient Model Reduction of Myelinated Compartments as Port-Hamiltonian Systems. In: van Beurden, M., Budko, N., Schilders, W. (eds) Scientific Computing in Electrical Engineering. Mathematics in Industry(), vol 36. Springer, Cham. https://doi.org/10.1007/978-3-030-84238-3_1

Download citation

Publish with us

Policies and ethics