Abstract
Photo-identification is the non-invasive process of uniquely identifying an individual among a set of individuals, based on the analysis of one or more photos. This is a specific task in cetaceans’ abundance and distribution studies, which can be effectively automated using computer vision and deep learning algorithms in large-scale studies. In this chapter, recent advances in the photo-identification of Risso’s dolphins are presented, covering the process from manual approaches to modern deep learning techniques. This manuscript highlights the strong multidisciplinary approach that is mandatory to accelerate and bring innovations working in multiple domains (marine biology and computer science in this case study). Particular attention is also given to the importance of data sharing, especially because it can be seen as a mandatory step that enables the proficient use of modern deep learning approaches to photo-identify a specimen. In the first part of the chapter, we present the state-of-the-art methods currently applied to the photo-identification task; the second part is devoted to describing the Smart Photo-Identification of Risso’s dolphins (SPIR) methods developed by our research team. Finally, future perspectives and directions of this research are discussed.
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References
Hammond PS, Mizroch SA, Donovan GP, (eds.). (1990) Individual recognition of cetaceans: use of photo-identification and other techniques to estimate population parameters. Rep Int Whal Commission 12:1–440
Akkaya A, Awbery T, Lyne P, et al (2020) Comparison of acoustic pattern recorded for the sperm whale (Physeter macrocephalus) in the Northen Ionian Sea (Central Mediterranean Sea) and in the north-western Levantine Sea (eastern Mediterranean Sea). In: Proceedings IMEKO metrology for the sea, Napoli, Italy, 5-7 October 2020, pp. 123–128
Azzolin M, Arcangeli A, Cipriano G et al (2020) Spatial distribution modelling of striped dolphin (Stenella coeruleoalba) at different geographical scales within the EU Adriatic and Ionian Sea region, central-eastern Mediterranean Sea. Aquat Conserv Mar Freshwat Ecosyst 30:1194–1207
Bellomo S, Santacesaria F.C, Fanizza C, et al (2019a) Photo-identification of Physeter macrocephalus in the Gulf of Taranto (northern Ionian Sea, Central-Eastern Mediterranean Sea). In: Proceedings IMEKO metrology for the sea, Genova, Italy, 3–5 October 2019, pp. 33–37
Carlucci R, Baş AA, Liebig P et al (2020b) Residency patterns and site fidelity of Grampus griseus (Cuvier, 1812) in the Gulf of Taranto (northern Ionian Sea, central-eastern Mediterranean Sea). Mammal Res 65:445–455
Carlucci R, Akkaya Bas A, Maglietta R, et al (2018d) Site fidelity, residency and habitat use of Risso's dolphin Grampus griseus in the Gulf of Taranto (northern Ionian Sea, Central-Eastern Mediterranean Sea) by photo-identification. In: Proceedings IEEE metrology for the sea, Bari, Italy, 8-10 October 2018, pp. 173–177
Carlucci R, Cipriano G, Paoli C et al (2018b) Random Forest population modelling of striped and common-bottlenose dolphins in the Gulf of Taranto (northern Ionian Sea, Central-Eastern Mediterranean Sea). Estuar Coast Shelf Sci 204:177–192
Carlucci R, Fanizza C, Cipriano G et al (2016) Modeling the spatial distribution of the striped dolphin (Stenella coeruleoalba) and common bottlenose dolphin (Tursiops truncatus) in the Gulf of Taranto (northern Ionian Sea, Central-Eastern Mediterranean Sea). Ecol Indic 69:707–721
Carlucci R, Ricci P, Cipriano G, Fanizza C (2018c) Abundance, activity and critical habitat of the striped dolphin Stenella coeruleoalba in the Gulf of Taranto (northern Ionian Sea, Central Mediterranean Sea). Aquat Conserv Mar Freshwat Ecosyst 28:324–336
Carlucci R, Manea E, Ricci P, Cipriano G, Fanizza C, Maglietta R, Gissi E (2021) Managing multiple pressures for cetaceans' conservation with an ecosystem-based marine spatial planning approach. J Environ Manage 287:112240. https://doi.org/10.1016/j.jenvman.2021.112240
Ciccarese S, Carlucci R, Ciani E et al (2019) Cytochrome b marker reveals an independent lineage of Stenella coeruleoalba in the Gulf of Taranto. PLoS One 14:5
Marangi M, Carlino P, Fanizza C (2020) Occurrence of zoonotic parasites in free-ranging dolphins and sea turtles in the Gulf of Taranto (northern Ionian Sea, Central-Eastern Mediterranean Sea). In: Proceedings IMEKO metrology for the sea, Napoli, Italy, 5–7 October 2020, pp. 93–98
Papale E, Fanizza C, Buscaino et al (2020) The social role of vocal complexity in striped dolphins. Front Mar Sci 2020:7. https://doi.org/10.3389/fmars.2020.584301
Santacesaria F.C, Bellomo S, Fanizza C, et al (2019b) Long-term residency of Tursiops truncatus in the Gulf of Taranto (Northern Ionian Sea, Central-Eastern Mediterranean Sea). In: Proceedings IMEKO metrology for the sea, Genova, Italy, 3–5 October 2019, pp. 28–32
Abdeldaim AM, Houssein EH, Hassanien AE (2018) Color image segmentation of fishes with complex background in water. In: International conference on advanced machine learning technologies and applications. Springer, New York, pp 634–643
Arzoumanian Z, Holmberg J, Norman B (2005) An astronomical pattern-matching algorithm for computer-aided identification of whale sharks Rhincodon typus. J Appl Ecol 42:999–1011
Van Tienhoven A, Den Hartog J, Reijns R, Peddemors V (2007) A computer-aided program for pattern-matching of natural marks on the spotted raggedtooth shark Carcharias taurus. J Appl Ecol 44:273–280
Carvajal-Gámez BE, Trejo-Salazar DB, Gendron D, Gallegos-Funes FJ (2017) Photo-id of blue whale by means of the dorsal fin using clustering algorithms and color local complexity estimation for mobile devices. EURASIP J Image Video Process 2017:6
Coleman T, Moon J (2019) A biometric for shark dorsal fins based on boundary descriptor matching. In: Proceedings of 32nd international conference. pp. 63–71
Gilman A, Hupman K, Stockin KA, Pawley MD (2016) Computer-assisted recognition of dolphin individuals using dorsal fin pigmentations. In: 2016 international conference on image and vision computing New Zealand (IVCNZ). IEEE, pp. 1–6
Losapio G, Maglietta R, Politi T, et al (2020) Lightweight and efficient convolutional neural networks for recognition of dolphin dorsal fins. In: 2020 Imeko TC-19 international workshop on metrology for the sea (MetroSea 2020). IEEE, Napoli
Mahmood A, Bennamoun M, An S et al (2017) Deep learning for coral classification. In: Handbook of neural computation. Elsevier, Amsterdam, pp 383–401
Pollicelli D, Coscarella M, Delrieux C (2020) RoI detection and segmentation algorithms for marine mammals photo-identification. Eco Inform 56:101038
Carlucci R, Bandelj V, Ricci P et al (2018a) Exploring spatio-temporal changes in the demersal and benthopelagic assemblages of the north-western Ionian Sea (Central Mediterranean Sea). Mar Ecol Prog Ser 598:1–19
Carlucci R, Capezzuto F, Cipriano G et al (2020a) Assessment of cetacean–fishery interactions in the marine food web of the Gulf of Taranto (northern Ionian Sea, Central Mediterranean Sea). Rev Fish Biol Fisher 31:135. https://doi.org/10.1007/s11160-020-09623-x
Carlucci R, Cipriano G, Santacesaria FC et al (2020c) Exploring data from an individual stranding of a Cuvier's beaked whale in the Gulf of Taranto (northern Ionian Sea, Central-Eastern Mediterranean Sea). J Exp Mar Biol Ecol 533:151473
Gaspari S, Natoli A (2012) Grampus griseus (Mediterranean subpopulation). IUCN, Gland
Bearzi G, Reeves RR, Remonato E et al (2011) Risso’s dolphin Grampus griseus in the Mediterranean Sea. Mamm Biol 76:385–400
de Boer MN, Clark J, Leopold MF et al (2013) Photo-identification methods reveal seasonal and long-term site-Fidelity of Risso’s dolphins (Grampus griseus) in shallow waters (Cardigan Bay, Wales). Open J Marine Sci 3:66. https://doi.org/10.4236/ojms.2013.32A007
Mariani M, Miragliuolo A, Mussi B et al (2016) Analysis of the natural markings of Risso’s dolphins (Grampus griseus) in the Central Mediterranean Sea. J Mammal 97:1512–1524
Renò V, Dimauro G, Labate G et al (2019) A SIFT-based software system for the photo-identification of the Risso’s dolphin. Eco Inform 50:95–101
Maglietta R, Renò V, Cipriano G et al (2018) DolFin: an innovative digital platform for studying Risso’s dolphins in the northern Ionian Sea (north-eastern Central Mediterranean). Sci Rep 8:1–11
Maglietta R, Renò V, Caccioppoli R et al (2020a) Convolutional neural networks for Risso’s dolphins identification. IEEE Access 8:80195–80206. https://doi.org/10.1109/ACCESS.2020.2990427
Renò V, Losapio G, Forenza F et al (2020) Combined color semantics and deep learning for the automatic detection of dolphin dorsal fins. Electronics 9:758. https://doi.org/10.3390/electronics9050758
Stanley R (1995) DARWIN: identifying dolphins from dorsal fin images. Senior thesis, Eckerd College
LeCun Y, Boser BE, Denker JS et al (1990) Handwritten digit recognition with a back-propagation network. In: Advances in neural information processing systems. MIT Press, Cambridge, pp 396–404
Goodfellow I, Bengio Y, Courville A (2016) Deep learning. MIT Press, Cambridge
Buehler P, Carroll B, Bhatia A et al (2019) An automated program to find animals and crop photographs for individual recognition. Eco Inform 50:191–196
Renò V, Mosca N, Marani R, et al (2018) Convolutional neural networks based ball detection in tennis games. In: Proceedings of the IEEE conference on computer vision and pattern recognition workshops, pp 1758–1764
Maglietta R, Renò V, Caccioppoli R, et al (2020b) NNPool in SPIR pipeline for Risso’s dolphins identification. In: 2020 Imeko TC-19 international workshop on metrology for the sea (MetroSea 2020). IEEE, Napoli
Lowe DG (2004) Distinctive image features from scale-invariant Keypoints. Int J Comput Vis 60:91–110. https://doi.org/10.1023/B:VISI.0000029664.99615.94
Ricci P, Libralato S, Capezzuto F et al (2019) Ecosystem functioning of two marine food webs in the North-Western Ionian Sea (Central Mediterranean Sea). Ecol Evol 9:10198–10212
Ricci P, Ingrosso M, Cipriano G, et al (2020a) Top-down cascading effects driven by the odontocetes in the Gulf of Taranto (northern Ionian Sea, Central Mediterranean Sea). In: Proceedings IMEKO metrology for the sea, Napoli, Italy, 5-7 October 2020, pp. 75-80
Ricci P, Ingrosso M, Carlucci R, et al (2020b) Quantifying the dolphin-fishery competition in the Gulf of Taranto (northern Ionian Sea, Central Mediterranean Sea). In: Proceedings IMEKO metrology for the sea, Napoli, Italy, 5–7 October 2020, pp. 135–140
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Renò, V., Dimauro, G., Fanizza, C., Carlucci, R., Maglietta, R. (2022). Computer Vision and Deep Learning Applied to the Photo-identification of Cetaceans. In: Daponte, P., Rossi, G.B., Piscopo, V. (eds) Measurement for the Sea. Springer Series in Measurement Science and Technology. Springer, Cham. https://doi.org/10.1007/978-3-030-82024-4_12
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