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Efficient Partitioning of Partial Correlation Networks

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Part of the Lecture Notes in Computer Science book series (LNIP,volume 12644)

Abstract

Partial correlation is a popular and principled metric for determining edges between nodes in a graph. However when the goal is to both estimate network connectivity from sample data and subsequently partition the result, methods such as spectral clustering can be applied much more efficiency and at larger scale. We derive a method that can similarly partition partial correlation networks directly from sample data. The method is closely related to spectral clustering, and can be implemented with comparable efficiency. Our results also provide new insight into the success of spectral clustering in many fields, as an approximation to clustering of partial correlation networks.

Keywords

  • Partial correlation
  • Spectral clustering
  • Graphical models
  • Graph partitioning

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References

  1. Brownlees, C., Gudmundsson, G.S., Lugosi, G.: Community detection in partial correlation network models. J. Bus. Econ. Stat. 1–11 (2020)

    Google Scholar 

  2. Dillon, K., Wang, Y.P.: A regularized clustering approach to brain parcellation from functional MRI data. In: Wavelets and Sparsity XVII, vol. 10394, p. 103940E. International Society for Optics and Photonics, August 2017

    Google Scholar 

  3. Dillon, K., Wang, Y.P.: Resolution-based spectral clustering for brain parcellation using functional MRI. J. Neurosci. Methods 335, 108628 (2020)

    CrossRef  Google Scholar 

  4. Ellett, F.S., Ericson, D.P.: Correlation, partial correlation, and causation. Synthese 67(2), 157–173 (1986)

    CrossRef  Google Scholar 

  5. von Luxburg, U.: A tutorial on spectral clustering. Stat. Comput. 17(4), 395–416 (2007)

    CrossRef  MathSciNet  Google Scholar 

  6. Pourahmadi, M.: Covariance estimation: the GLM and regularization perspectives. Stat. Sci. 26(3), 369–387 (2011)

    CrossRef  MathSciNet  Google Scholar 

  7. Schäfer, J., Strimmer, K.: A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. Stat. Appl. Genet. Mol. Biol. 4(1), 32 (2005)

    CrossRef  MathSciNet  Google Scholar 

  8. Van Essen, D.C., et al.: WU-Minn HCP consortium: the human connectome project: a data acquisition perspective. NeuroImage 62(4), 2222–2231 (2012)

    CrossRef  Google Scholar 

  9. Whittaker, J.: Graphical Models in Applied Multivariate Statistics. Wiley, New York (2009)

    MATH  Google Scholar 

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Correspondence to Keith Dillon .

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5 Appendix: Matlab Implementation of Clustering

5 Appendix: Matlab Implementation of Clustering

In this appendix we provide efficient Matlab code for performing partial correlation clustering.

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Dillon, K. (2021). Efficient Partitioning of Partial Correlation Networks. In: Torsello, A., Rossi, L., Pelillo, M., Biggio, B., Robles-Kelly, A. (eds) Structural, Syntactic, and Statistical Pattern Recognition. S+SSPR 2021. Lecture Notes in Computer Science(), vol 12644. Springer, Cham. https://doi.org/10.1007/978-3-030-73973-7_17

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  • DOI: https://doi.org/10.1007/978-3-030-73973-7_17

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-73972-0

  • Online ISBN: 978-3-030-73973-7

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