Skip to main content

Exploring Large Context for Cerebral Aneurysm Segmentation

  • Conference paper
  • First Online:
Cerebral Aneurysm Detection and Analysis (CADA 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12643))

Included in the following conference series:

Abstract

Automated segmentation of aneurysms from 3D CT is important for the diagnosis, monitoring, and treatment planning of the cerebral aneurysm disease. This short paper briefly presents the main technique details of the aneurysm segmentation method in MICCAI 2020 CADA challenge. The main contribution is that we configure the 3D U-Net with a large patch size, which can obtain the large context. Our method ranked second on the MICCAI 2020 CADA testing dataset with an average Jaccard of 0.7593. Our code and trained models are publicly available at https://github.com/JunMa11/CADA2020.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D u-net: learning dense volumetric segmentation from sparse annotation. In: International Conference on Medical Image Computing and Computer-assisted Intervention, pp. 424–432 (2016)

    Google Scholar 

  2. Isensee, F., Jäeger, P.F., Kohl, S.A.A., Petersen, J., Maier-Hein, K.H.: NNU-net: a self-configuring method for deep learning-based biomedical image segmentation. Nat. Methods 18(2), 203–211 (2021)

    Article  Google Scholar 

  3. Ivantsits, M., et al.: Cerebral aneurysm detection and analysis challenge 2020 (CADA) (2021)

    Google Scholar 

  4. Myronenko, A.: 3D MRI brain tumor segmentation using autoencoder regularization. In: International MICCAI Brainlesion Workshop, pp. 311–320 (2018)

    Google Scholar 

Download references

Acknowledgement

This work is supported by the National Natural Science Foundation of China (No. 11531005, No. 11971229). We are grateful to the High Performance Computing Center of Nanjing University for supporting the blade cluster system to run the experiments. We also highly appreciate the CADA organizers for holding the great challenge and creating the publicly available dataset.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jun Ma .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Ma, J., Nie, Z. (2021). Exploring Large Context for Cerebral Aneurysm Segmentation. In: Hennemuth, A., Goubergrits, L., Ivantsits, M., Kuhnigk, JM. (eds) Cerebral Aneurysm Detection and Analysis. CADA 2020. Lecture Notes in Computer Science(), vol 12643. Springer, Cham. https://doi.org/10.1007/978-3-030-72862-5_7

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-72862-5_7

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-72861-8

  • Online ISBN: 978-3-030-72862-5

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics