Skip to main content

Genetics of Cellular Immunodeficiencies

  • Chapter
  • First Online:
Cellular Primary Immunodeficiencies

Part of the book series: Rare Diseases of the Immune System ((RDIS))

  • 725 Accesses

Abstract

Primary immunodeficiencies (PIDs) constitute a rapidly expanding field. As of 2019 there are 430 distinct human inborn errors of immunity listed in the current IUIS classification (International Union of Immunological Societies) (Tangye et al., J Clin Immunol 40:24–64, 2020).

Within the last 20 years, hundreds of genetic defects underlying PID have been identified. Historically, these were classified into humoral immunodeficiencies, on the one hand, and cellular immunodeficiencies, on the other hand. However, as our understanding has been evolving, these categories have become increasingly complex: genetic defects, for example, can affect multiple cell populations simultaneously, may affect communication between different cell types, may constitute failure of the bone marrow or other compartments to support and regulate certain cell populations, or may be associated with syndromic features. Within this chapter, we aim to provide an overview over the basic concepts of genetics as well as genetics of cellular immunodeficiencies.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Tangye SG, Al-Herz W, Bousfiha A, Chatila T, Cunningham-Rundles C, Etzioni A et al (2020) Human inborn errors of immunity: 2019 update on the classification from the International Union of Immunological Societies Expert Committee. J Clin Immunol 40(1):24–64

    Article  Google Scholar 

  2. Herman SE, Gordon AL, Hertlein E, Ramanunni A, Zhang X, Jaglowski S et al (2011) Bruton tyrosine kinase represents a promising therapeutic target for treatment of chronic lymphocytic leukemia and is effectively targeted by PCI-32765. Blood 117(23):6287–6296

    Article  CAS  Google Scholar 

  3. Mendel G (1996) Experiments in plant hybridization (1865). Verhandlungen des naturforschenden Vereins Brünn) Available online

    Google Scholar 

  4. Morgan TH, Sturtevant AH, Bridges CB, Muller HJ (1915) The mechanism of Mendelian heredity. H. Holt, New York

    Google Scholar 

  5. Avery OT, Macleod CM, McCarty M (1944) Studies on the chemical nature of the substance inducing transformation of pneumococcal types: induction of transformation by a desoxyribonucleic acid fraction isolated from pneumococcus type III. J Exp Med 79(2):137–158

    Article  CAS  Google Scholar 

  6. Watson JD, Crick FH (1953) Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 171(4356):737–738

    Article  CAS  Google Scholar 

  7. Ingram VM (1956) A specific chemical difference between the globins of normal human and sickle-cell anaemia haemoglobin. Nature 178(4537):792–794

    Article  CAS  Google Scholar 

  8. Giblett ER, Anderson JE, Cohen F, Pollara B, Meuwissen HJ (1972) Adenosine-deaminase deficiency in two patients with severely impaired cellular immunity. Lancet 2(7786):1067–1069

    Article  CAS  Google Scholar 

  9. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74(12):5463–5467

    Article  CAS  Google Scholar 

  10. Vetrie D, Vorechovský I, Sideras P, Holland J, Davies A, Flinter F et al (1993) The gene involved in X-linked agammaglobulinaemia is a member of the src family of protein-tyrosine kinases. Nature 361(6409):226–233

    Article  CAS  Google Scholar 

  11. Tsukada S, Saffran DC, Rawlings DJ, Parolini O, Allen RC, Klisak I et al (1993) Deficient expression of a B cell cytoplasmic tyrosine kinase in human X-linked agammaglobulinemia. Cell 72(2):279–290

    Article  CAS  Google Scholar 

  12. D’Elios MM, Rizzi M (2019) Humoral Primary Immunodeficiencies. Springer, Cham

    Book  Google Scholar 

  13. Mensa-Vilaró A, Bravo García-Morato M, de la Calle-Martin O, Franco-Jarava C, Martínez-Saavedra MT, González-Granado LI et al (2019) Unexpected relevant role of gene mosaicism in patients with primary immunodeficiency diseases. J Allergy Clin Immunol 143(1):359–368

    Article  Google Scholar 

  14. Vaz-Drago R, Custódio N, Carmo-Fonseca M (2017) Deep intronic mutations and human disease. Hum Genet 136(9):1093–1111

    Article  CAS  Google Scholar 

  15. Goldschmidt R (1935) Gen und Außeneigenschaft. Z Indukt Abstamm Vererbungsl 69(1):38–69

    Google Scholar 

  16. Marian AJ (2010) DNA sequence variants and the practice of medicine. Curr Opin Cardiol 25(3):182–185

    Article  Google Scholar 

  17. Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM et al (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29(1):308–311

    Article  CAS  Google Scholar 

  18. Landrum MJ, Lee JM, Benson M, Brown GR, Chao C, Chitipiralla S et al (2018) ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Res 46(D1):D1062–D10D7

    Article  CAS  Google Scholar 

  19. Karczewski KJ, Weisburd B, Thomas B, Solomonson M, Ruderfer DM, Kavanagh D et al (2017) The ExAC browser: displaying reference data information from over 60 000 exomes. Nucleic Acids Res 45(D1):D840–D8D5

    Article  CAS  Google Scholar 

  20. Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q et al (2020) The mutational constraint spectrum quantified from variation in 141,456 humans. Nature 581(7809):434–443

    Article  CAS  Google Scholar 

  21. Kircher M, Witten DM, Jain P, O’Roak BJ, Cooper GM, Shendure J (2014) A general framework for estimating the relative pathogenicity of human genetic variants. Nat Genet 46(3):310–315

    Article  CAS  Google Scholar 

  22. Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P et al (2010) A method and server for predicting damaging missense mutations. Nat Methods 7(4):248–249

    Article  CAS  Google Scholar 

  23. Kumar P, Henikoff S, Ng PC (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4(7):1073–1081

    Article  CAS  Google Scholar 

  24. Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J et al (2015) Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 17(5):405–424

    Article  Google Scholar 

  25. den Dunnen JT, Dalgleish R, Maglott DR, Hart RK, Greenblatt MS, McGowan-Jordan J et al (2016) HGVS recommendations for the description of sequence variants: 2016 update. Hum Mutat 37(6):564–569

    Article  Google Scholar 

  26. Wildeman M, van Ophuizen E, den Dunnen JT, Taschner PE (2008) Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker. Hum Mutat 29(1):6–13

    Article  CAS  Google Scholar 

  27. Casanova JL, Conley ME, Seligman SJ, Abel L, Notarangelo LD (2014) Guidelines for genetic studies in single patients: lessons from primary immunodeficiencies. J Exp Med 211(11):2137–2149

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Natalie Frede .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Frede, N. (2021). Genetics of Cellular Immunodeficiencies. In: D'Elios, M.M., Baldari, C.T., Annunziato, F. (eds) Cellular Primary Immunodeficiencies. Rare Diseases of the Immune System. Springer, Cham. https://doi.org/10.1007/978-3-030-70107-9_2

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-70107-9_2

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-70106-2

  • Online ISBN: 978-3-030-70107-9

  • eBook Packages: MedicineMedicine (R0)

Publish with us

Policies and ethics