Abstract
Primary immunodeficiencies (PIDs) constitute a rapidly expanding field. As of 2019 there are 430 distinct human inborn errors of immunity listed in the current IUIS classification (International Union of Immunological Societies) (Tangye et al., J Clin Immunol 40:24–64, 2020).
Within the last 20 years, hundreds of genetic defects underlying PID have been identified. Historically, these were classified into humoral immunodeficiencies, on the one hand, and cellular immunodeficiencies, on the other hand. However, as our understanding has been evolving, these categories have become increasingly complex: genetic defects, for example, can affect multiple cell populations simultaneously, may affect communication between different cell types, may constitute failure of the bone marrow or other compartments to support and regulate certain cell populations, or may be associated with syndromic features. Within this chapter, we aim to provide an overview over the basic concepts of genetics as well as genetics of cellular immunodeficiencies.
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References
Tangye SG, Al-Herz W, Bousfiha A, Chatila T, Cunningham-Rundles C, Etzioni A et al (2020) Human inborn errors of immunity: 2019 update on the classification from the International Union of Immunological Societies Expert Committee. J Clin Immunol 40(1):24–64
Herman SE, Gordon AL, Hertlein E, Ramanunni A, Zhang X, Jaglowski S et al (2011) Bruton tyrosine kinase represents a promising therapeutic target for treatment of chronic lymphocytic leukemia and is effectively targeted by PCI-32765. Blood 117(23):6287–6296
Mendel G (1996) Experiments in plant hybridization (1865). Verhandlungen des naturforschenden Vereins Brünn) Available online
Morgan TH, Sturtevant AH, Bridges CB, Muller HJ (1915) The mechanism of Mendelian heredity. H. Holt, New York
Avery OT, Macleod CM, McCarty M (1944) Studies on the chemical nature of the substance inducing transformation of pneumococcal types: induction of transformation by a desoxyribonucleic acid fraction isolated from pneumococcus type III. J Exp Med 79(2):137–158
Watson JD, Crick FH (1953) Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 171(4356):737–738
Ingram VM (1956) A specific chemical difference between the globins of normal human and sickle-cell anaemia haemoglobin. Nature 178(4537):792–794
Giblett ER, Anderson JE, Cohen F, Pollara B, Meuwissen HJ (1972) Adenosine-deaminase deficiency in two patients with severely impaired cellular immunity. Lancet 2(7786):1067–1069
Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74(12):5463–5467
Vetrie D, Vorechovský I, Sideras P, Holland J, Davies A, Flinter F et al (1993) The gene involved in X-linked agammaglobulinaemia is a member of the src family of protein-tyrosine kinases. Nature 361(6409):226–233
Tsukada S, Saffran DC, Rawlings DJ, Parolini O, Allen RC, Klisak I et al (1993) Deficient expression of a B cell cytoplasmic tyrosine kinase in human X-linked agammaglobulinemia. Cell 72(2):279–290
D’Elios MM, Rizzi M (2019) Humoral Primary Immunodeficiencies. Springer, Cham
Mensa-Vilaró A, Bravo García-Morato M, de la Calle-Martin O, Franco-Jarava C, Martínez-Saavedra MT, González-Granado LI et al (2019) Unexpected relevant role of gene mosaicism in patients with primary immunodeficiency diseases. J Allergy Clin Immunol 143(1):359–368
Vaz-Drago R, Custódio N, Carmo-Fonseca M (2017) Deep intronic mutations and human disease. Hum Genet 136(9):1093–1111
Goldschmidt R (1935) Gen und Außeneigenschaft. Z Indukt Abstamm Vererbungsl 69(1):38–69
Marian AJ (2010) DNA sequence variants and the practice of medicine. Curr Opin Cardiol 25(3):182–185
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM et al (2001) dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29(1):308–311
Landrum MJ, Lee JM, Benson M, Brown GR, Chao C, Chitipiralla S et al (2018) ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Res 46(D1):D1062–D10D7
Karczewski KJ, Weisburd B, Thomas B, Solomonson M, Ruderfer DM, Kavanagh D et al (2017) The ExAC browser: displaying reference data information from over 60 000 exomes. Nucleic Acids Res 45(D1):D840–D8D5
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q et al (2020) The mutational constraint spectrum quantified from variation in 141,456 humans. Nature 581(7809):434–443
Kircher M, Witten DM, Jain P, O’Roak BJ, Cooper GM, Shendure J (2014) A general framework for estimating the relative pathogenicity of human genetic variants. Nat Genet 46(3):310–315
Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P et al (2010) A method and server for predicting damaging missense mutations. Nat Methods 7(4):248–249
Kumar P, Henikoff S, Ng PC (2009) Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 4(7):1073–1081
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J et al (2015) Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 17(5):405–424
den Dunnen JT, Dalgleish R, Maglott DR, Hart RK, Greenblatt MS, McGowan-Jordan J et al (2016) HGVS recommendations for the description of sequence variants: 2016 update. Hum Mutat 37(6):564–569
Wildeman M, van Ophuizen E, den Dunnen JT, Taschner PE (2008) Improving sequence variant descriptions in mutation databases and literature using the Mutalyzer sequence variation nomenclature checker. Hum Mutat 29(1):6–13
Casanova JL, Conley ME, Seligman SJ, Abel L, Notarangelo LD (2014) Guidelines for genetic studies in single patients: lessons from primary immunodeficiencies. J Exp Med 211(11):2137–2149
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Frede, N. (2021). Genetics of Cellular Immunodeficiencies. In: D'Elios, M.M., Baldari, C.T., Annunziato, F. (eds) Cellular Primary Immunodeficiencies. Rare Diseases of the Immune System. Springer, Cham. https://doi.org/10.1007/978-3-030-70107-9_2
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