Skip to main content

Part of the book series: Lecture Notes in Physics ((LNP,volume 982))

  • 507 Accesses

Abstract

Developed primarily for motion on discrete lattices representative of molecular crystals described in Chap. 11, the defect technique was extended to the continuum in this chapter and analyzed in novel ways for simple 1-dimensional systems, the motion without defects being described by the diffusion equation. The first focus was on taking the continuum limit of discrete lattice results. The second was to obtain and catalog 1-dimensional results for perfect and imperfect absorption. The third was to do the same for higher dimensional systems with high symmetry, explicit results being obtained in each of these cases in terms of known special functions such as the error function and Bessel functions. The basic equation was next generalized to one in which, before the introduction of the defect, the moving particles have a tendency to be attracted to a center, necessitating, therefore, the replacement of the diffusion equation by the Smoluchowski equation. Novel results were displayed in this scenario including an effect involving non-monotonicity relative to the strength of the attraction. Finally, a brief discussion was given of how to build a theory of the coalescence of signaling receptor clusters in immune cells by reversing the defect technique.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 69.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 89.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    Several of these results were derived by Kathrin Spendier in collaboration with me as part of her Ph.D. dissertation work (Spendier 2012). Others were compiled by her from sources in the literature and cited appropriately as noted. She was an exceptional student equally at ease with theoretical research and experimental work.

  2. 2.

    For the rare reader who decides to compare expressions to those in the original publication, here is a note so confusion can be avoided. In this book, ξ refers to what one gets by evaluating ξ at 𝜖 = 1∕τ H. This is opposite to the usage in the original publication and has been done here for convenience.

  3. 3.

    The diffusion length derives its name from the fact that, ignoring factors of order of unity, it is the distance the exciton would cover in the host in its radiative lifetime, while moving with the diffusion constant D.

  4. 4.

    This work was continued in a generalization to ecologically motivated problems (Kenkre and Sugaya 2014; Sugaya and Kenkre 2018) in collaboration with Satomi Sugaya. We will have occasion to return to that work, which was about transmission of infection in epidemics, in Chap. 15.

  5. 5.

    As a keynote lecture on “Theoretical framework for the description of signal receptor cluster aggregation in cells” at the Fourteenth International Membrane Research Forum, Kyoto, Japan, on March 16, 2013.

References

  • Abramowitz, M., & Stegun, I. A. (1965). Handbook of mathematical functions with formulas, graphs, and mathematical tables. New York: Dover.

    MATH  Google Scholar 

  • Bagchi, B., Fleming, G. R., & Oxtoby, D. W. (1983). Theory of electronic relaxation in solution in the absence of an activation barrier. The Journal of Chemical Physics, 78(12), 7375–7385.

    Article  ADS  Google Scholar 

  • Ben-Naim, E., Redner, S., & Weiss, G. H. (1993). Partial absorption and ‘virtual’ traps. Journal of Statistical Physics, 71(1–2), 75–88.

    Article  ADS  Google Scholar 

  • Blythe, R. A., & Bray, A. J. (2003). Survival probability of a diffusing particle in the presence of Poisson-distributed mobile traps. Physical Review E, 67(4), 041101.

    Article  ADS  Google Scholar 

  • Doering, C. R, & Ben-Avraham, D. (1988). Interparticle distribution functions and rate equations for diffusion-limited reactions. Physical Review A, 38(6), 3035.

    Article  ADS  Google Scholar 

  • Doetsch, G. (1971). Guide to the application of the Laplace and Z-transforms (240 pp.). New York, NY: Van Nostrand Reingold Co.

    Google Scholar 

  • Drazer, G., Wio, H. S, & Tsallis, C. (2000). Anomalous diffusion with absorption: Exact time-dependent solutions. Physical Review E, 61(2), 1417.

    Article  ADS  Google Scholar 

  • Ebeling, W., Schweitzer, F., & Tilch, B. (1999). Active Brownian particles with energy depots modeling animal mobility. BioSystems, 49(1), 17–29.

    Article  Google Scholar 

  • Gallus, G., & Wolf, H. C. (1966). Direct measurement of the diffusion length of singulet excitons in solid phenanthrene. Physica Status Solidi (B), 16(1), 277–280.

    Article  ADS  Google Scholar 

  • Giuggioli, L., Abramson, G., Kenkre, V. M., Parmenter, R. R., & Yates, T. L. (2006a). Theory of home range estimation from displacement measurements of animal populations. Journal of Theoretical Biology, 240, 126–135.

    Article  MathSciNet  Google Scholar 

  • Herrmann, R. G. (1999). Biogenesis and evolution of photosynthetic (thylakoid) membranes. Bioscience Reports, 19(5), 355–365.

    Article  Google Scholar 

  • Jaeger, J. C., & Carslaw, H. S. (1959). Conduction of heat in solids. Oxford: Clarendon Press.

    MATH  Google Scholar 

  • Kenkre, V. M. (Nitant), & Giuggioli, L. (2020). Theory of the spread of epidemics and movement ecology of animals: An interdisciplinary approach using methodologies of physics and mathematics. Cambridge: Cambridge University Press.

    Google Scholar 

  • Kenkre, V. M., & Sugaya, S. (2014). Theory of the transmission of infection in the spread of epidemics: Interacting random walkers with and without confinement. Bulletin of Mathematical Biology, 76(12), 3016–3027.

    Article  MathSciNet  Google Scholar 

  • Lindner, M., Nir, G., Vivante, A., Young, I. T, & Garini, Y. (2013). Dynamic analysis of a diffusing particle in a trapping potential. Physical Review E, 87(2), 022716.

    Article  ADS  Google Scholar 

  • Livesay, D. R., Jambeck, P., Rojnuckarin, A., & Subramaniam, S. (2003). Conservation of electrostatic properties within enzyme families and superfamilies. Biochemistry, 42(12), 3464–3473.

    Article  Google Scholar 

  • Park, S. H., Peng, H., Parus, S., Taitelbaum, H., & Kopelman, R. (2002). Spatially and temporally resolved studies of convectionless photobleaching kinetics: Line trap. The Journal of Physical Chemistry A, 106(33), 7586–7592.

    Article  ADS  Google Scholar 

  • Redner, S. (2001). A guide to first-passage processes. Cambridge: Cambridge University Press.

    Book  Google Scholar 

  • Redner, S., & Ben-Avraham, D. (1990). Nearest-neighbour distances of diffusing particles from a single trap. Journal of Physics A: Mathematical and General, 23(22), L1169–L1173.

    Article  ADS  MathSciNet  Google Scholar 

  • Reichl, L. E. (2009). A modern course in statistical physics (3rd ed.) Hoboken, NJ: Wiley.

    MATH  Google Scholar 

  • Rice, S. A. (1985). Diffusion-limited reactions. Amsterdam: Elsevier.

    Google Scholar 

  • Risken, H. (1984). The Fokker-Planck equation: Methods of solution and applications. Springer series in synergetics (Vol. 18). Berlin/Heidelberg: Springer-Verlag.

    Book  Google Scholar 

  • Ritchie, R. H., & Sakakura, A. Y. (1956). Asymptotic expansions of solutions of the heat conduction equation in internally bounded cylindrical geometry. Journal of Applied Physics, 27(12), 1453–1459.

    Article  ADS  MathSciNet  Google Scholar 

  • Roberts, G. E., & Kaufman, H. (1966). Table of Laplace transforms. Philadelphia: Saunders.

    MATH  Google Scholar 

  • Rodriguez, M. A., Abramson, G., Wio, H. S., & Bru, A. (1993). Diffusion-controlled bimolecular reactions: Long-and intermediate-time regimes with imperfect trapping within a Galanin approach. Physical Review E, 48(2), 829.

    Article  ADS  Google Scholar 

  • Sancho, J. M., Romero, A. H., Lacasta, A. M., & Lindenberg, K. (2007). Langevin dynamics of A+ A reactions in one dimension. Journal of Physics: Condensed Matter, 19(6), 065108.

    ADS  Google Scholar 

  • Simpson, O. (1956). Electronic properties of aromatic hydrocarbons III. Diffusion of excitons. Proceedings of the Royal Society of London, A238, 402.

    Google Scholar 

  • Spendier, K. (2012). Dynamics and distribution of immunoglobolin E receptors : A dialog between experiment and theory. https://digitalrepository.unm.edu/phyc_etds/65

    Google Scholar 

  • Spendier, K. (2020). TIRF Microscopy Image Sequences of Fc? RI-centric Synapse Formation in RBL-2H3 Cells Dataset. Mendeley Data, V1.

    Google Scholar 

  • Spendier, K., Carroll-Portillo, A., Lidke, K. A., Wilson, B. S., Timlin, J. A., & Thomas, J. L. (2010). Distribution and dynamics of rat basophilic leukemia immunoglobulin E receptors (FcεRI) on planar ligand-presenting surfaces. Biophysical Journal, 99(2), 388–397.

    Article  ADS  Google Scholar 

  • Spendier, K., & Kenkre, V. M. (2013). Analytic solutions for some reaction-diffusion scenarios. Journal of Physical Chemistry B, 117(49), 15639–15650.

    Article  Google Scholar 

  • Spendier, K., Sugaya, S., & Kenkre, V. M. (2013). Reaction-diffusion theory in the presence of an attractive harmonic potential. Physical Review E, 88, 062142.

    Article  ADS  Google Scholar 

  • Spouge, J. L. (1988). Exact solutions for a diffusion-reaction process in one dimension. Physical Review Letters, 60(10), 871.

    Article  ADS  MathSciNet  Google Scholar 

  • Sugaya, S., & Kenkre, V. M. (2018). Analysis of transmission of infection in epidemics: Confined random walkers in dimensions higher than one. Bulletin of Mathematical Biology, 80(12), 3106–3126.

    Article  MathSciNet  Google Scholar 

  • Taitelbaum, H. (1991). Nearest-neighbor distances at an imperfect trap in two dimensions. Physical Review A, 43(12), 6592.

    Article  ADS  Google Scholar 

  • Takahashi, Y., & Tomura, M. (1971). Diffusion of singlet excitons in anthracene crystals. Journal of the Physical Society of Japan, 31(4), 1100–1108.

    Article  ADS  Google Scholar 

  • Torney, D. C., & McConnell, H. M. (1983). Diffusion-limited reactions in one dimension. The Journal of Physical Chemistry, 87(11), 1941–1951.

    Article  Google Scholar 

  • Wade, R. C., Gabdoulline, R. R., Lüdemann, S. K., & Lounnas, V. (1998). Electrostatic steering and ionic tethering in enzyme–ligand binding: Insights from simulations. Proceedings of the National Academy of Sciences USA, 95(11), 5942–5949.

    Article  ADS  Google Scholar 

  • Wang, M. D., Yin, H., Landick, R., Gelles, J., Block, S. M. (1997). Stretching DNA with optical tweezers. Biophysical Journal, 72(3), 1335.

    Article  ADS  Google Scholar 

  • Yuste, S. B., & Acedo, L. (2001). Multiparticle trapping problem in the half-line. Physica A: Statistical Mechanics and Its Applications, 297(3–4), 321–336.

    Article  ADS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

Copyright information

© 2021 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Kenkre, V.M.(. (2021). The Defect Technique in the Continuum. In: Memory Functions, Projection Operators, and the Defect Technique. Lecture Notes in Physics, vol 982. Springer, Cham. https://doi.org/10.1007/978-3-030-68667-3_12

Download citation

Publish with us

Policies and ethics