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Cascaded Convolutional Neural Network for Automatic Myocardial Infarction Segmentation from Delayed-Enhancement Cardiac MRI

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Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges (STACOM 2020)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12592))

Abstract

Automatic segmentation of myocardial contours and relevant areas like infraction and no-reflow is an important step for the quantitative evaluation of myocardial infarction. In this work, we propose a cascaded convolutional neural network for automatic myocardial infarction segmentation from delayed-enhancement cardiac MRI. We first use a 2D U-Net to focus on the intra-slice information to perform a preliminary segmentation. After that, we use a 3D U-Net to utilize the volumetric spatial information for a subtle segmentation. Our method is evaluated on the MICCAI 2020 EMIDEC challenge dataset and achieves average Dice score of 0.8786, 0.7124 and 0.7851 for myocardium, infarction and no-reflow respectively, outperforms all the other teams of the segmentation contest.

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Notes

  1. 1.

    http://emidec.com.

  2. 2.

    https://github.com/EMIDEC-Challenge/Evaluation-metrics.

References

  1. Abulnaga, S.M., Rubin, J.: Ischemic stroke lesion segmentation in CT perfusion scans using pyramid pooling and focal loss. In: Crimi, A., Bakas, S., Kuijf, H., Keyvan, F., Reyes, M., van Walsum, T. (eds.) BrainLes 2018. LNCS, vol. 11383, pp. 352–363. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-11723-8_36

    Chapter  Google Scholar 

  2. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  3. Heller, N., et al.: The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: results of the KiTS19 challenge. Med. Image Anal. 67, 101821 (2020)

    Article  Google Scholar 

  4. Isensee, F., Petersen, J., Kohl, S.A., Jäger, P.F., Maier-Hein, K.H.: nnU-Net: breaking the spell on successful medical image segmentation 1, 1–8. arXiv preprint arXiv:1904.08128 (2019)

  5. Lalande, A., et al.: Emidec: a database usable for the automatic evaluation of myocardial infarction from delayed-enhancement cardiac MRI. Data 5(4), 89 (2020)

    Article  Google Scholar 

  6. Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016)

    Google Scholar 

  7. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  8. Thygesen, K., Alpert, J.S., White, H.D., et al.: Universal definition of myocardial infarction. J. Am. Coll. Cardiol. 50(22), 2173–2195 (2007)

    Article  Google Scholar 

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Correspondence to Yichi Zhang .

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Zhang, Y. (2021). Cascaded Convolutional Neural Network for Automatic Myocardial Infarction Segmentation from Delayed-Enhancement Cardiac MRI. In: Puyol Anton, E., et al. Statistical Atlases and Computational Models of the Heart. M&Ms and EMIDEC Challenges. STACOM 2020. Lecture Notes in Computer Science(), vol 12592. Springer, Cham. https://doi.org/10.1007/978-3-030-68107-4_33

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  • DOI: https://doi.org/10.1007/978-3-030-68107-4_33

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-68106-7

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