Skip to main content

Towards a Core Ontology for Hierarchies of Hypotheses in Invasion Biology

  • Conference paper
  • First Online:
The Semantic Web: ESWC 2020 Satellite Events (ESWC 2020)

Abstract

With a rapidly growing body of knowledge, it becomes more and more difficult to keep track of the state of the art in a research field. A formal representation of the hypotheses in the field, their relations, the studies that support or question them based on which evidence, would greatly ease this task and help direct future research efforts. We present the design of such a core ontology for one specific field, namely invasion biology. We introduce the design of the Hierarchy of Hypotheses (HoH) core ontology to semantically capture and model the information contained in hierarchies of hypotheses created for invasion biology. The proposed core ontology is based on a number of well structured related ontologies, which provide a solid basis for its main entities.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    http://bioportal.bioontology.org/.

  2. 2.

    http://purl.obolibrary.org/obo/ENVO_01001110.

  3. 3.

    http://purl.jp/bio/4/id/200906003112410894.

References

  1. Algergawy, A., König-Ries, B.: Partitioning of bioportal ontologies: an empirical study. In: SWAT4LS (2019)

    Google Scholar 

  2. Callahan, A., Dumontier, M., Shah, N.H.: HyQue: evaluating hypotheses using semantic web technologies. J. Biomed. Semant. (2011)

    Google Scholar 

  3. Campos, P.M., Reginato, C.C., Almeida, J.P.A.: Towards a core ontology for scientific research activities. In: ER (2019)

    Google Scholar 

  4. Fathalla, S., Vahdati, S., Auer, S., Lange, C.: SemSur: a core ontology for the semantic representation of research findings. In: SEMANTICS (2018)

    Google Scholar 

  5. Garcia, L.F., Abel, M., Perrin, M., dos Santos Alvarenga, R.: The GeoCore ontology: a core ontology for general use in geology. Comput. Geosci. 135 (2020)

    Google Scholar 

  6. Garijo, D., Gil, Y., Ratnakar, V.: The disk hypothesis ontology: capturing hypothesis evolution for automated discovery. In: K-CAP Workshops (2017)

    Google Scholar 

  7. Heger, T., et al.: Conceptual frameworks and methods for advancing invasion ecology. AMBIO 42(5), 527–540 (2013)

    Article  Google Scholar 

  8. Jeschke, J.M., Heger, T.: Invasion Biology: Hypotheses and Evidence. CABI, Wallingford (2018)

    Book  Google Scholar 

  9. Musen, M.A., et al.: The national center for biomedical ontology. J. Am. Med. Inform. Assoc. 19(12), 190–195 (2012)

    Article  Google Scholar 

  10. Pinto, H.S., Martins, J.P.: Ontologies: how can they be built? Knowl. Inf. Syst. 6(4), 441–464 (2004)

    Article  Google Scholar 

  11. Scherp, A., Saathoff, C., Franz, T., Staab, S.: Designing core ontologies. Appl. Ontol. 6(3), 177–221 (2011)

    Article  Google Scholar 

Download references

Acknowledgments

This work has been funded by the Deutsche Forschungsgemeinschaft (DFG) as part of CRC 1076 AquaDiva. Additional support has been received from the German Federal Ministry of Education and Research BMBF within the Collaborative Project “Bridging in Biodiversity Science - BIBS” (funding number 01LC1501).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Alsayed Algergawy .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Algergawy, A., Stangneth, R., Heger, T., Jeschke, J.M., König-Ries, B. (2020). Towards a Core Ontology for Hierarchies of Hypotheses in Invasion Biology. In: Harth, A., et al. The Semantic Web: ESWC 2020 Satellite Events. ESWC 2020. Lecture Notes in Computer Science(), vol 12124. Springer, Cham. https://doi.org/10.1007/978-3-030-62327-2_1

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-62327-2_1

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-62326-5

  • Online ISBN: 978-3-030-62327-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics