Abstract
Cross-correlation [1] measures the frequency at which one particular neuron or electrode fires (“target”) as a function of time.
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References
Salinas E, Sejnowski TJ (2001) Correlated neuronal activity and the flow of neural information. Nat Rev Neurosci 2:539–550
Eytan D, Minerbi A, Ziv N, Marom S (2004) Dopamine-induced dispersion of correlations between action potentials in networks of cortical neurons. J Neurophysiol 92:1817–1824
Wagenaar DA, Pine J, Potter SM (2006) An extremely rich repertoire of bursting patterns during the development of cortical cultures. BMC Neurosci 7:11
Pastore VP, Massobrio P, Godjoski A, Martinoia S (2018) Excitatory-inhibitory links and network topology in large scale neuronal assemblies from multi-electrode recordings. PLoS Comput Biol 14(8):e1006381. https://doi.org/10.1371/journal.pcbi.100638
Brillinger DR, Bryant HL, Segundo JP (1976) Identification of synaptic interactions. Biol Cybern 22:213–228. https://doi.org/10.1007/bf00365087
Eichler M, Dahlhaus R, Sandkuhler J (2003) Partial correlation analysis for the identification of synaptic connections. Biol Cybern 89:289–302
Papoulis A, Pillai SU (2002) Probability, random variables and stochastic processes, 4th edn. Mc Graw Hill, New York
Dahlhaus R, Eichler M, Sandkuhler J (1997) Identification of synaptic connections in neural ensembles by graphical models. J Neurosci Methods 77:93–107
Schreiber T (2000) Measuring information transfer. Phys Rev Lett 85:461–464
Bennett K, Robertson J (2011) MATLAB—A ubiquitous tool for the practical engineer. In: Ionescu CM (ed)
Overbey LA, Todd MD (2009) Dynamic system change detection using a modification of the transfer entropy. J Sound Vib 322:438–453. https://doi.org/10.1016/j.jsv.2008.11.025
Berdondini L et al (2006) A microelectrode array (MEA) integrated with clustering structures for investigating in vitro neurodynamics in confined interconnected sub-populations of neurons. Sens Actuat B Chem 114:530–541
Garofalo M, Nieus T, Massobrio P, Martinoia S (2009) Evaluation of the performance of information theory-based methods and cross-correlation to estimate the functional connectivity in cortical networks. PLoS ONE 4:e6482. https://doi.org/10.1371/journal.pone.0006482
Taketani M, Baudry M (2006) Advances in network electrophysiology: using multi-electrode arrays. Springer, New York
Poli D, Pastore VP, Massobrio P (2015) Functional connectivity in in vitro neuronal assemblies. Front Neural Circ 9:57. https://doi.org/10.3389/fncir.2015.00057
Nigam S et al (2016) Rich-club organization in effective connectivity among cortical neurons. J Neurosci 36:670–684. https://doi.org/10.1523/JNEUROSCI.2177-15.2016
Grun S, Rotter S (2010) Series in computational neuroscience. Springer, p 444
Fawcett T (2006) An introduction to ROC analysis. Pattern Recogn Lett 27:861–874
Rubinov M, Sporns O (2010) Complex network measures of brain connectivity: uses and interpretations. NeuroImage 52:1059–1069. https://doi.org/10.1016/j.neuroimage.2009.10.003
Sporns O, Tononi G, Edelman GM (2000) Connectivity and complexity: the relationship between neuroanatomy and brain dynamics. Neural Netw 13:909–922
Barabasi A-L, Bonabeau E (2003) Scale-free networks. Sci Am 50–59
Sporns O, Honey CJ, Kotter R (2007) Identification and classification of hubs in brain networks. PLoS ONE 2:e1049. https://doi.org/10.1371/journal.pone.0001049
Bonifazi P et al (2009) GABAergic hub neurons orchestrate synchrony in developing hippocampal networks. Science 326:1419–1424
Eguiluz VM, Chialvo DR, Cecchi GA, Baliki M, Apkarian AV (2005) Scale-free brain functional networks. Phys Rev Lett 94:018102
Watts DJ, Strogatz SH (1998) Collective dynamics of ‘small-world’ networks. Nature 393:440–442
Downes JH et al (2012) Emergence of a small-world functional network in cultured neurons. PLoS Comput Biol 8:e1002522. https://doi.org/10.1371/journal.pcbi.1002522
Schroeter MS, Charlesworth P, Kitzbichler MG, Paulsen O, Bullmore ET (2015) Emergence of rich-club topology and coordinated dynamics in development of hippocampal functional networks in vitro. J Neurosci 35:5459–5470. https://doi.org/10.1523/JNEUROSCI.4259-14.2015
Berdondini L et al (2009) Active pixel sensor array for high spatio-temporal resolution electrophysiological recordings from single cell to large scale neuronal networks. Lab Chip 9:2644–2651
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Pastore, V.P. (2021). Materials and Methods. In: Estimating Functional Connectivity and Topology in Large-Scale Neuronal Assemblies. Springer Theses. Springer, Cham. https://doi.org/10.1007/978-3-030-59042-0_2
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