Skip to main content

Fungal Endophytes and Their Bioactive Compounds in Tropical Forests of Costa Rica

Abstract

We present a glimpse of the diversity of endophytic fungi in the tropical forests of Costa Rica and some examples of bioactive compounds obtained from them. We include the characterization of isolates carried out mainly by the former National Biodiversity Institute as well as data reported in the literature during the last two decades. This work includes the analysis of 427 fungal isolates from 280 plant species (belonging to 107 families). All the isolates were classified as Ascomycota, and within this phylum, they were assigned to four classes, 21 orders, 49 families, and 83 genera. The orders Xylariales, Glomerellales, and Diaporthales were the most abundant while Pleosporales, Xylariales, and Hypocreales the most diverse. The class Leotiomycetes presented the more substantial proportion of bioactive molecules. We showed the positive effect on the addition of unique taxa by increasing the number of sampling sites, seasons, habits of plants, altitudinal range, and plant tissues. Also, we show that endophytes produce compounds chemically and structurally diverse, many of which can be useful for the discovery of new drugs. This work provides valuable insights for bioprospecting of endophytes and also for the understanding of the ecology of these fungi in tropical forests.

Keywords

  • Fungal endophytes
  • Secondary metabolites
  • Natural products
  • Biodiversity
  • Costa Rica

This is a preview of subscription content, access via your institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • DOI: 10.1007/978-3-030-53506-3_6
  • Chapter length: 22 pages
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
eBook
USD   129.00
Price excludes VAT (USA)
  • ISBN: 978-3-030-53506-3
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
Softcover Book
USD   169.99
Price excludes VAT (USA)
Hardcover Book
USD   169.99
Price excludes VAT (USA)
Fig. 6.1
Fig. 6.2
Fig. 6.3
Fig. 6.4
Fig. 6.5

References

  • Arnold AE (2007) Understanding the diversity of foliar endophytic fungi:progress, challenges, and frontiers. Fungal Biol Rev 21:51–66

    CrossRef  Google Scholar 

  • Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecology 88:541–549

    CrossRef  PubMed  Google Scholar 

  • Arnold AE, Maynard Z, Gilbert G, Coley PD, Kursar TA (2000) Are tropical fungal endophytes hyperdiverse? Ecol Lett 3:267–274

    CrossRef  Google Scholar 

  • Arnold AE, Mejia LC, Kyllo D, Rojas EI, Maynard Z, Robbins N, Herre EA (2003) Fungal endophytes limit pathogen damage in a tropical tree. PNAS USA 100:15649–15654

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R (2007) Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia 99:185–206

    CrossRef  CAS  PubMed  Google Scholar 

  • Brady SF, Clardy J (2000) CR377, a new pentaketide antifungal agent isolated from an endophytic fungus. J Nat Prod 63:1447–1448

    CrossRef  CAS  PubMed  Google Scholar 

  • Brady S, Singh MP, Janso JE, Clardy J (2000a) Cytoskyrins A and B, new BIA active bisanthraquinones isolated from an endophytic fungus. Org Lett 2:4047–4049

    CrossRef  CAS  PubMed  Google Scholar 

  • Brady SF, Singh MP, Janso JE, Clardy J (2000b) Guanacastepene, a fungal-derived diterpene antibiotic with a new carbon skeleton. J Am Chem Soc 122:2116–2117

    CrossRef  CAS  Google Scholar 

  • Brady SF, Wagenaar MM, Singh MP, Janso JE, Clardy J (2000c) The cytosporones, new octaketide antibiotics isolated from an endophytic fungus. Org Lett 2:4043–4046

    CrossRef  CAS  PubMed  Google Scholar 

  • Cannon PF, Simmons CM (2002) Diversity and host preference of leaf endophytic fungi in the Iwokrama Forest Reserve, Guyana. Mycologia 94:210–220

    CrossRef  PubMed  Google Scholar 

  • Cao S, Clardy J (2011) New naphthoquinones and a new delta-lactone produced by endophytic fungi from Costa Rica. Tetrahedron Lett 52:2206–2208

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Cao S, Ross L, Tamayo G, Clardy J (2010) Asterogynins: secondary metabolites from a Costa Rican endophytic fungus. Org Lett 12:4661–4663

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Cao S, Cryan L, Habeshian KA, Murillo C, Tamayo-Castillo G, Rogers MS, Clardy J (2012a) Phenolic compounds as antiangiogenic CMG2 inhibitors from Costa Rican endophytic fungi. Bioorg Med Chem Lett 22:5885–5888

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Cao S, McMillin DW, Tamayo G, Delmore J, Mitsiades CS, Clardy J (2012b) Inhibition of tumor cells interacting with stromal cells by xanthones isolated from a Costa Rican Penicillium sp. J Nat Prod 75:793–797

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Chaverri P, Gazis RO (2011) Linking ex planta fungi with their endophytic stages: Perisporiopsis, a common leaf litter and soil fungus, is a frequent endophyte of Hevea spp. and other plants. Fungal Ecol 4:94–102

    CrossRef  Google Scholar 

  • Clay K, Schardl C (2002) Evolutionary origins and ecological consequences of endophyte symbiosis with grasses. Am Nat 160:99–127

    CrossRef  Google Scholar 

  • Del Olmo-Ruiz M, Arnold AE (2017) Community structure of fern-affiliated endophytes in three neotropical forests. J Trop Ecol 33:60–73

    CrossRef  Google Scholar 

  • Deshmukh SK, Verekar SA, Bhave SV (2014) Endophytic fungi: a reservoir of antibacterials. Front Microbiol 5:715

    PubMed  Google Scholar 

  • Dreyfuss MM, Chapela IH (1994) Potential of fungi in the discovery of novel, low-molecular weight pharmaceuticals. In: Gullo VP (ed) Discovery of novel natural products with therapeutic potential. Newnes, Boston, pp 49–80

    CrossRef  Google Scholar 

  • Elsässer B, Krohn K, Flörke U, Root N, Aust HJ, Draeger S, Schulz B, Antus S, Kurtán T (2005) X-ray structure determination, absolute configuration and biological activity of phomoxanthone A. Eur J Org Chem 21:4563–4570

    CrossRef  CAS  Google Scholar 

  • Gazis R, Chaverri P (2010) Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru. Fungal Ecol 3:240–254

    CrossRef  Google Scholar 

  • Gazis R, Kuo A, Riley R, LaButti K, Lipzen A, Lin J, Hainaut M (2016) The genome of Xylona heveae provides a window into fungal endophytism. Fungal Biol 120:26–42

    CrossRef  CAS  PubMed  Google Scholar 

  • Hinterdobler W, Schinnerl J (2019) Chemical diversity and richness of fungal endophytes from Costa Rican Palicourea and Psychotria species (Rubiaceae). Acta Zoo Bot Austria 156:215–230

    Google Scholar 

  • Holdridge LR (1947) Determination of world plant formations from simple climatic data. Science 105:367–368

    CrossRef  CAS  PubMed  Google Scholar 

  • Holdridge LR (1967) Life zone ecology. Tropical Science Center, San Jose, Costa Rica

    Google Scholar 

  • Hyde KD, Xu J, Rapior S, Jeewon R, Lumyong S, Niego AGT, Chaiyasen A (2019) The amazing potential of fungi: 50 ways we can exploit fungi industrially. Fungal Div 97:1–136

    CrossRef  Google Scholar 

  • Jumpponen A, Jones KL (2009) Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol 184:438–448

    CrossRef  CAS  PubMed  Google Scholar 

  • Kogel KH, Franken P, Huckelhoven R (2006) Endophyte or parasite - what decides? Curr Opin Plant Biol 9:358–363

    CrossRef  PubMed  Google Scholar 

  • Kontnik R, Clardy J (2008) Codinaeopsin, an antimalarial fungal polyketide. Org Lett 10:4149–4151

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Kumaresan V, Suryanarayanan TS (2001) Occurrence and distribution of endophytic fungi in a mangrove community. Mycol Res 105:1388–1391

    CrossRef  Google Scholar 

  • Kusari S, Hertweck C, Spiteller M (2012) Chemical ecology of endophytic fungi: origins of secondary metabolites. Chem Biol 19:792–798

    CrossRef  CAS  PubMed  Google Scholar 

  • Lodge DJ, Fisher PJ, Sutton BC (1996) Endophytic fungi of Manilkara bidentata leaves in Puerto Rico. Mycologia 88:733–738

    CrossRef  Google Scholar 

  • Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Hilu K (2018) Contemporaneous radiations of fungi and plants linked to symbiosis. Nat Commun 9:1–11

    CrossRef  CAS  Google Scholar 

  • Maheshwari R (2006) What is an endophytic fungus? Curr Sci 90:1309

    Google Scholar 

  • Miller KI, Qing C, Sze DMY, Roufogalis BD, Neilan BA (2012) Culturable endophytes of medicinal plants and the genetic basis for their bioactivity. Microb Ecol 64:431–449

    CrossRef  PubMed  Google Scholar 

  • Oksanen JGB, Kindt R, Legendre P, Minchin P, O'Hara RB, Simpson G, Solymos P, Stevens H, Wagner H (2014) Vegan: Community Ecology Package

    Google Scholar 

  • Qian H (1998) Large-scale biogeographic patterns of vascular plant richness in North America: an analysis at the generic level. J Biogeogr 25:829–836

    CrossRef  Google Scholar 

  • R-Core-Team (2015) R: a language and environment for statistical computing. R Foundation for statistical computing, Vienna, Austria

    Google Scholar 

  • Redman RS, Sheehan KB, Stout RG, Rodriguez RJ, Henson JM (2002) Thermotolerance generated by plant/fungal symbiosis. Science 298:1581

    CrossRef  CAS  PubMed  Google Scholar 

  • Ren Y, Strobel GA, Graff JC, Jutila M, Park SG, Gosh S, Teplow D, Condron M, Pang E, Hess WM, Moore E (2008) Colutellin A, an immunosuppressive peptide from Colletotrichum dematium. Microbiology 154:1973–1979

    CrossRef  CAS  PubMed  Google Scholar 

  • Rodriguez RJ, White JF Jr, Arnold AE, Redman RS (2009) Fungal endophytes: diversity and functional roles. New Phytol 182:314–330

    CrossRef  CAS  PubMed  Google Scholar 

  • Rojas-Jimenez K, Hernandez M, Blanco J, Vargas LD, Acosta-Vargas LG, Tamayo G (2016) Richness of cultivable endophytic fungi along an altitudinal gradient in wet forests of Costa Rica. Fungal Ecol 20:124–131

    CrossRef  Google Scholar 

  • Saikkonen K, Faeth SH, Helander M, Sullivan TJ (1998) Fungal endophytes: a continuum of interactions with host plants. Ann Rev Ecol Syst 29:319–343

    CrossRef  Google Scholar 

  • Schulz B, Boyle C (2005) The endophytic continuum. Mycol Res 109:661–686

    CrossRef  PubMed  Google Scholar 

  • Schulz B, Wanke U, Draeger S, Aust HJ (1993) Endophytes from herbaceous plants an shrubs-effectiveness of surface sterilization methods. Mycol Res 97:1447–1450

    CrossRef  Google Scholar 

  • Sieber TN (2007) Endophytic fungi in forest trees: are they mutualists? Fungal Biol Rev 21:75–89

    CrossRef  Google Scholar 

  • Singh MP, Janso JE, Luckman SW, Brady SF, Clardy J, Greenstein M, Maiese WM (2000) Biological activity of guanacastepene, a novel diterpenoid antibiotic produced by an unidentified fungus CR115. J Antibiot 53:256–261

    CrossRef  CAS  Google Scholar 

  • Singh MP, Janso JE, Brady SF (2007) Cytoskyrins and cytosporones produced by Cytospora sp. CR200: taxonomy, fermentation and biological activities. Mar Drugs 5:71–84

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Smith SA, Tank DC, Boulanger LA, Bascom-Slack CA, Eisenman K, Kingery D, Babbs B, Fenn K, Greene JS, Hann BD, Keehner J, Kelley-Swift EG, Kembaiyan V, Lee SJ, Li P, Light DY, Lin EH, Ma C, Moore E, Schorn MA, Vekhter D, Nunez PV, Strobel GA, Donoghue MJ, Strobel SA (2008) Bioactive endophytes warrant intensified exploration and conservation. PLoS One 3:e3052

    CrossRef  PubMed  PubMed Central  CAS  Google Scholar 

  • Stierle A, Strobel G, Stierle D (1993) Taxol and taxane production by Taxomyces andreanae, an endophytic fungus of Pacific yew. Science 260:214–216

    CrossRef  CAS  PubMed  Google Scholar 

  • Strobel G, Daisy B (2003) Bioprospecting for microbial endophytes and their natural products. Microbiol Mol Biol Rev 67:491–502

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Strobel G, Yang X, Sears J, Kramer R, Sidhu RS, Hess WM (1996) Taxol from Pestalotiopsis microspora, an endophytic fungus of Taxus wallichiana. Microbiology 142:435–440

    CrossRef  CAS  PubMed  Google Scholar 

  • Strobel G, Daisy B, Castillo U, Harper J (2004) Natural products from endophytic microorganisms. J Nat Prod 67:257–268

    CrossRef  CAS  PubMed  Google Scholar 

  • Strobel GA, Spang S, Kluck K, Hess WM, Sears J, Livinghouse T (2008) Synergism among volatile organic compounds resulting in increased antibiosis in Oidium sp. FEMS Microbiol Lett 283:140–145

    CrossRef  CAS  PubMed  Google Scholar 

  • Sun X, Guo LD (2012) Endophytic fungal diversity: review of traditional and molecular techniques. Mycology 3:65–76

    Google Scholar 

  • Suryanarayanan TS, Murali TS, Venkatesan G (2002) Occurrence and distribution of fungal endophytes in tropical forests across a rainfall gradient. Can J Bot 80:818–826

    CrossRef  Google Scholar 

  • Suryanarayanan R, Venkatesan G, Murali TS (2003) Endophytic fungal communities in leaves of tropical forest trees: diversity and distribution patterns. Curr Sci 85:489–493

    Google Scholar 

  • Tan XM, Zhou YQ, Zhou XL, Xia XH, Wei Y, He LL, Yu LY (2018) Diversity and bioactive potential of culturable fungal endophytes of Dysosma versipellis; a rare medicinal plant endemic to China. Sci Rep 8:1–9

    CrossRef  Google Scholar 

  • Verma VC, Gond SK, Kumar A, Kharwar RN, Strobel G (2007) The endophytic mycoflora of bark, leaf, and stem tissues of Azadirachta indica A. Juss (neem) from Varanasi (India). Microb Ecol 54:119–125

    CrossRef  CAS  PubMed  Google Scholar 

  • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73:5261–5267

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, Inc, New York, pp 315–322

    Google Scholar 

  • Ymele-Leki P, Cao S, Sharp J, Lambert KG, McAdam AJ, Husson RN, Tamayo G, Clardy J, Watnick PI (2012) A high-throughput screen identifies a new natural product with broad-spectrum antibacterial activity. PLoS One 7:e31307

    CrossRef  CAS  PubMed  PubMed Central  Google Scholar 

  • Zuccaro A, Schulz B, Mitchell JI (2003) Molecular detection of ascomycetes associated with Fucus serratus. Mycol Res 107:1451–1466

    CrossRef  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and Permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this chapter

Verify currency and authenticity via CrossMark

Cite this chapter

Rojas-Jimenez, K., Tamayo-Castillo, G. (2021). Fungal Endophytes and Their Bioactive Compounds in Tropical Forests of Costa Rica. In: Rosa, L.H. (eds) Neotropical Endophytic Fungi. Springer, Cham. https://doi.org/10.1007/978-3-030-53506-3_6

Download citation