A Correction Method of a Base Classifier Applied to Imbalanced Data Classification
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Abstract
In this paper, the issue of tailoring the soft confusion matrix classifier to deal with imbalanced data is addressed. This is done by changing the definition of the soft neighbourhood of the classified object. The first approach is to change the neighbourhood to be more local by changing the Gaussian potential function approach to the nearest neighbour rule. The second one is to weight the instances that are included in the neighbourhood. The instances are weighted inversely proportional to the a priori class probability. The experimental results show that for one of the investigated base classifiers, the usage of the KNN neighbourhood significantly improves the classification results. What is more, the application of the weighting schema also offers a significant improvement.
Keywords
Classification Probabilistic model Randomized reference classifier Soft confusion matrix Imbalanced data1 Introduction
Imbalanced dataset, denoting the case when there is a significant difference between the prior probabilities for different classes, is a difficult problem for classification. It results from the fact that – on the one hand – for most such problems it is desirable to build classifiers with good performance on the minority class being the class of interest, but – on the other hand – in highly imbalanced datasets, the minority class is mostly sensitive to singular classification errors. Let’s cite two practical classification problems as examples of such situation. The first example concerns fraud detection in online monetary transactions. Although fraud is becoming more common and this is a growing problem for banking systems, the number of fraudulent transactions is typically a small fraction of all financial transactions. So, we have here an imbalanced classification problem in which the classifier should correctly recognize objects from the minority class, i.e. detect all fraud transactions and at the same time it should not give false alarms. A similar situation is in the second example regarding computer-aided medical diagnosis. In the simple task of medical screening tests we have two classes: healthy people (majority class) and people suffering from a rare disease (minority class). Requirements for the diagnostic algorithm are the same as before: to successfully detect ill people.
There are more negative consequences of imbalanced dataset that hinder correct classification. We can mention here [28]: overlapping classes (clusters of minority class are heavily contaminated with majority class), lack of density (learners do not have enough data to make generalization about the distribution of minority samples), noisy data (the presence of noise degrades the information capacity of minority class samples) and dataset shift (training and testing data follow the different distribution).
- 1.
Data level approach (or external techniques) involves manipulating instances of the learning set to obtain a more balanced class distribution. This goal can be achieved through undersampling and/or oversampling procedures. In the first approach, instances are removed from the majority class, while in the second technique new artificial instances are added to the minority class. Different specified algorithms for both methods define the way of removing (adding) instances from the majority (to the minority) class. Random undersampling [17], ACOSampling [41], EUSBoost [10, 19] for undersampling approach and SMOTE [3], ADASYN [14], SNOCC [42] for oversampling procedures are exemplary algorithms for this category of methods.
- 2.Algorithm level approach (or internal techniques) denotes classifiers which directly learn class characteristics from the imbalanced data. The leading approaches in this category of methods are:
Improved algorithms denote classifiers that are modified (improved) to fit their properties to the specifics of imbalanced classification. Support vector machines [15], artificial neural networks [8], k-nearest neighbours [25], decision tree [24], fuzzy inference system [7] and random forest [40] are the most popular methods which have been adapted to classification of imbalanced data.
One-class learning algorithms for imbalanced problem are trained on the representation of the minority class [32].
Cost-sensitive learning is based on a very-well known classification scheme in which the cost of misclassification depends on the kind of error made. For example, in the Bayes decision theory this cost is modeled by loss function (loss matrix), which practically can have any values [6]. Application of this scheme to the classification of imbalanced data denotes that first we define cost of misclassification of objects from the minority (class of interest) and majority class (e.g. using domain expert opinion) and then we build a classifier (learner) which takes into account different costs for different classification errors (e.g. minimizing the expected cost or risk) [18, 20, 31].
Ensemble learning – in this approach several base classifiers are trained and their predictions are combined to produce the final classification decision [9]. Ensemble methods applied to the imbalanced data classification combine ensemble learning algorithms and techniques dedicated to imbalanced problems, e.g. undersampling/oversampling procedures [29, 37] or cost-sensitive learning [31].
This paper is devoted to the new classifier for imbalanced data which belongs to the algorithm level category of methods. The algorithm developed is based on the author’s method of improving the operation of any classifier called base classifier. In the method first the local class-dependent probabilities of misclassification and correct classification are determined. For this purpose two original concepts of randomized reference classifier (RRC) [39] and soft confusion matrix (SCM) [34] are used. Then, the determined probabilities are used for correction of the decision of the base classifier to increase the chance of correct classification of the recognized object. The developed method has already been successfully applied for the construction of multi-classifier systems [34], in multi-label recognition [35, 36] and in the recognition of biosignals [22]. However, the algorithm is sensitive to imbalanced data distribution. In other words, its correction ability is lower when the class imbalance ratio is higher. To make the developed approach more practical, it is necessary to provide a mechanism of dealing with imbalanced class distribution. And this paper is aimed at dealing with this issue. In the proposed algorithm for imbalanced data, the classification functions have additional factors inversely proportional to the class size with the parameter experimentally tuned. This mechanism allows a controlled change in the degree of correction of the base classifier to highlight minority classes.
The paper is organized as follows. Section 2 introduces the formal notation used in the paper and provides a description of the proposed approach. The experimental setup is given in Sect. 3. In Sect. 4 experimental results are given and discussed. Section 5 concludes the paper.
2 Proposed Method
2.1 Preliminaries
The basis for the proposed method of classification is the probabilistic model meaning the assumption that x and j are observed values of random variables X and J, respectively.
2.2 Correction of Base Classifier
To give the formula (4) a constructive character and calculate both probabilities we will use two concepts: the randomized reference classifier (RRC) and the soft confusion matrix (SCM). The RRC is randomized model of classifier \(\psi \) and with its help the probabilities \(p(\psi (x)=i) \in [0,1]\) will be calculated. In turn, the SCM will be used to determine the assessment of correct and misclassification of \(\psi \) at the point x, i.e. probabilities \(P(j|\psi (x)=i), i,j \in \mathcal {M}\). The method defines the surrounding of the point x containing validation objects in terms of fuzzy sets allowing for flexible selection of membership functions and taking into account the case of imbalanced classes.
2.3 Randomized Reference Classifier
2.4 Soft Confusion Matrix
The multiclass confusion matrix of classifier \(\psi \)
Classification by \(\psi \) | |||||
---|---|---|---|---|---|
1 | 2 | ... | M | ||
1 | \(\varepsilon _{1,1}\) | \(\varepsilon _{1,2}\) | ... | \(\varepsilon _{1,M}\) | |
True | 2 | \(\varepsilon _{2,1}\) | \(\varepsilon _{2,2}\) | ... | \(\varepsilon _{2,M}\) |
Class | \(\vdots \) | \(\vdots \) | \(\vdots \) | \(\vdots \) | |
M | \(\varepsilon _{M,1}\) | \(\varepsilon _{M,2}\) | ... | \(\varepsilon _{M,M}\) |
Now we will define and give a practical interpretation of fuzzy sets that create the proposed SCM concept (11).
- 1.KNN Neighborhood. Let first define the K-neighbourhood of the test object x as the set of K nearest validation objects, viz.where \(\mathrm {dist}(x_k,x)^2\) denotes the Euclidean distance in the feature space \(\mathcal {X}\). The KNN-related membership function of \(\mathcal {N}(x)\) is defined as follows:$$\begin{aligned} \mathcal {K}_K(x)=\{x_{n1}, \ldots , x_{nK} \in \mathcal {V}: \max _{l=1,2,\ldots ,K} \mathrm {dist}(x_{nl},x)^2\le \min _{x_k \notin \mathcal {K}_K(x)} \mathrm {dist}(x_k,x)^2\}, \end{aligned}$$(15)This kind of neighbourhood should be more fragile to the local properties of the data since it completely ignores the instances that are not in \(\mathcal {K}\).$$\begin{aligned} \mu _{\mathcal {N}(x)}^{(K)}(x_k)={\left\{ \begin{array}{ll}1\;\mathrm {if}\; x_k \in \mathcal {K}(x), \\ 0\;\mathrm {otherwise}.\end{array}\right. } \end{aligned}$$(16)
- 2.Gaussian Neighborhood. In this method the Gaussian membership function was applied for defining the set \(\mathcal {N}(x)\):where \(\beta \in \mathbb {R}_{+}\) is parameter of \(\mu \). The Gaussian-based neighbourhood was originally proposed to use with the SCM classifier in [34].$$\begin{aligned} \mu _{\mathcal {N}(x)}^{(G)}(x_k)=\exp (-\beta \mathrm {dist}(x,x_k)^2), \end{aligned}$$(17)
2.5 Dealing with Imbalanced Data
3 Experimental Setup
To validate the classification quality obtained by the proposed approaches the experimental evaluation, which setup is described below, is performed.
The classifiers implemented in WEKA framework [12] were used. If not stated otherwise, the classifier parameters were set to their defaults. For each base classifier, the training dataset is resampled with weights inversely proportional to the a priori probability of instance-specific class. This is to make base classifiers robust against imbalanced data.
- 1.
\(\psi _{\mathrm {R}}\) – unmodified base classifier,
- 2.
\(\psi _{\mathrm {G}}\) – SCM classifier with unmodified Gaussian neighbourhood,
- 3.
\(\psi _{\mathrm {Gw}}\) – SCM classifier with weighted Gaussian neighbourhood,
- 4.
\(\psi _{\mathrm {K}}\) – SCM classifier with unmodified KNN neighbourhood,
- 5.
\(\psi _{\mathrm {Kw}}\) – SCM classifier with weighted KNN neighbourhood.
The size of the neighbourhood, expressed as \(\beta \) coefficient, the number of nearest neighbours K and the weighting coefficient \(\gamma \), were chosen using a fivefold cross-validation procedure and the grid search technique. The following values of \(\beta \), K and \(\gamma \) were considered: \( \beta \in \left\{ 2^{-2},2^{-1},2^{1}, \cdots , 2^{6} \right\} \), \(K \in \left\{ 1,3,5,7,\cdots , 15\right\} \), \(\gamma \in \left\{ 0,2^{-6},2^{-5},2^{-4},\cdots 2^{2} \right\} \). The values were chosen in such a way that minimizes macro-averaged kappa coefficient.
The experimental code was implemented using WEKA framework. The source code of the algorithms is available online1.
To evaluate the proposed methods the following classification-loss criteria are used [30]: Macro-averaged \(\mathrm {FDR}\) (1-precision), \(\mathrm {FNR}\) (1-recall), \(F_{1}\), Matthews correlation coefficient (\(\mathrm {MCC}\)); Micro-averaged \(F_{1}\), \(\mathrm {MCC}\). More quality measures from the macro-averaging group are considered because this kind of measures is more sensitive to the performance for minority classes.
Following the recommendations of [4, 11], the statistical significance of the obtained results was assessed using the two-step procedure. The first step is to perform the Friedman test [4] for each quality criterion separately. Since the multiple criteria were employed, the familywise errors (FWER) should be controlled [2]. To do so, the Bergman-Hommel [2] procedure of controlling FWER of the conducted Friedman tests was employed. When the Friedman test shows that there is a significant difference within the group of classifiers, the pairwise tests using the Wilcoxon signed-rank test [4, 38] were employed. To control FWER of the Wilcoxon-testing procedure, the Bergman-Hommel approach was employed [2]. For all tests the significance level was set to \(\alpha =0.05\).
The experimental evaluation was conducted on the collection of the 78 benchmark datasets taken from the Keel repository containing imbalanced datasets with imbalance ratio higher than 92.
During the preprocessing stage, the datasets underwent a few transformations. First, all nominal attributes were converted into a set of binary variables. The transformation is necessary whenever the distance-based algorithms are employed [33]. To reduce the computational burden and remove irrelevant information, the PCA procedure with the variance threshold set to 95% was applied [16]. The features were also normalized to have zero mean value and zero unit variance.
4 Results and Discussion
To compare multiple algorithms on multiple benchmark sets the average ranks approach [4] is used. To provide a visualization of the average ranks, the radar plots are employed. In the plots, the data is visualized in such way that the lowest ranks are closer to the centre of the graph. The radar plots related to the experimental results are shown in Figs. 1a–c.
Due to the page limit, the full results are published online3.
The numerical results are given in Tables 2, 3 and 4. Each table is structured as follows. The first row of each section contains names of the investigated algorithms. Then the table is divided into six sections – one section is related to a single evaluation criterion. The first row of each section is the name of the quality criterion investigated in the section. The second row shows the p-value of the Friedman test. The third one shows the average ranks achieved by algorithms. The following rows show p-values resulting from pairwise Wilcoxon test. The p-value equal to 0.00 informs that the p-values are lower than \(10^{-3}\) and p-value equal to 1.00 informs that the value is higher than 0.999.
4.1 Macro Averaged Criteria
Let us begin with the analysis of the results related to KNN neighbourhood. For the Naive Bayes and J48 classifiers, there are no significant differences between the Gaussian neighbourhood and KNN neighbourhood. For the Nearest Centroid classifier, on the other hand, the KNN neighbourhood gives better results in terms of \(\mathrm {FNR}\), \(F_{1}\) and \(\mathrm {MCC}\). For the \(\mathrm {FDR}\) criterion, there is no significant difference. It means that for \(\psi _{NC}\) classifier applying KNN neighbourhood improves recall without affecting precision what results in better overall performance. What is more, for the J48 classifier, only the classifiers based on the KNN neighbourhood offers a significant improvement in terms of \(F_{1}\) criterion.
Now the impact of applying the weighting scheme is assessed. Generally speaking, the application of the weighting scheme results in improving recall at the cost of reducing precision. However, in general, the reduction of precision is not significant (except for \(\psi _{NC}\) classifier and KNN approach). As a consequence, the overall classification quality, measured in terms of \(F_{1}\) criterion remains unchanged (no significant difference). This kind of change is the expected consequence of applying the weighting scheme. On the other hand, in cases of J48 and NC classifiers, there are significant improvements in terms of \(\mathrm {MCC}\) criterion. What is more, for the J48 classifier, only the classifiers based on the weighted neighbourhood offers a significant improvement in terms of \(\mathrm {MCC}\) criterion.
Now the correction ability of the SCM classifier is investigated. As it was said above, for the J48 base classifier, the overall correction ability depends on the type of the neighbourhood applied. For \(\psi _{NB}\) and \(\psi _{NC}\) classifiers, on the other hand, there is always a significant improvement in terms of \(F_{1}\) and \(\mathrm {MCC}\) criteria. In general, the application of SCM classifier, when compared to the base classifier, improves the precision at the cost of decreasing recall. The recall-decrease is lower for the SCM classifiers using the weighted neighbourhood approach. So, applying the weighting scheme eliminates the main drawback of the SCM classifier used to the imbalanced data.
4.2 Micro Averaged Criteria
Radar plots for the investigated classifiers.
Statistical evaluation. Wilcoxon test results for J48 classifier.
\(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | \(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | \(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Nam. | MaFDR | MaFNR | MaF1 | ||||||||||||
Frd. | 4.079e−06 | 3.984e−02 | 3.189e−03 | ||||||||||||
Rank | 3.846 | 2.981 | 2.897 | 2.532 | 2.744 | 2.865 | 3.385 | 2.737 | 3.192 | 2.821 | 3.590 | 3.013 | 2.987 | 2.750 | 2.660 |
\(\varPsi _{R}\) | .002 | .000 | .000 | .000 | .128 | 1.00 | .128 | 1.00 | .217 | .217 | .009 | .003 | |||
\(\varPsi _{G}\) | .933 | .491 | .491 | .003 | .952 | .007 | .985 | .572 | .206 | ||||||
\(\varPsi _{Gw}\) | .491 | .491 | .022 | 1.00 | .572 | .217 | |||||||||
\(\varPsi _{K}\) | .491 | .000 | .217 | ||||||||||||
Nam. | MaMCC | MiF1 | MiMCC | ||||||||||||
Frd. | 1.494e−03 | 1.412e−24 | 1.412e−24 | ||||||||||||
Rank | 3.564 | 3.205 | 2.622 | 2.910 | 2.699 | 4.506 | 2.064 | 3.205 | 2.346 | 2.878 | 4.506 | 2.064 | 3.205 | 2.346 | 2.878 |
\(\varPsi _{R}\) | .603 | .009 | .129 | .026 | .000 | .004 | .000 | .000 | .000 | .004 | .000 | .000 | |||
\(\varPsi _{G}\) | .010 | .535 | .045 | .000 | .005 | .000 | .000 | .005 | .000 | ||||||
\(\varPsi _{Gw}\) | .173 | .717 | .000 | .003 | .000 | .003 | |||||||||
\(\varPsi _{K}\) | .026 | .000 | .000 |
Statistical evaluation. Wilcoxon test results for NB classifier.
\(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | \(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | \(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Nam. | MaFDR | MaFNR | MaF1 | ||||||||||||
Frd. | 2.116e−08 | 1.697e−02 | 7.976e−18 | ||||||||||||
Rank | 3.955 | 2.494 | 2.987 | 2.609 | 2.955 | 2.654 | 3.308 | 2.872 | 3.327 | 2.840 | 4.417 | 2.494 | 2.994 | 2.564 | 2.532 |
\(\varPsi _{R}\) | .000 | .000 | .000 | .000 | .005 | .392 | .020 | .392 | .000 | .000 | .000 | .000 | |||
\(\varPsi _{G}\) | .103 | .612 | .501 | .001 | .511 | .006 | .197 | .664 | .664 | ||||||
\(\varPsi _{Gw}\) | .096 | .501 | .019 | .833 | .091 | .041 | |||||||||
\(\varPsi _{K}\) | .074 | .006 | .749 | ||||||||||||
Nam. | MaMCC | MiF1 | MiMCC | ||||||||||||
Frd. | 1.224e−04 | 1.226e−31 | 1.226e−31 | ||||||||||||
Rank | 3.737 | 2.929 | 2.744 | 2.923 | 2.667 | 4.699 | 1.878 | 3.154 | 2.391 | 2.878 | 4.699 | 1.878 | 3.154 | 2.391 | 2.878 |
\(\varPsi _{R}\) | .004 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | |||
\(\varPsi _{G}\) | .145 | .894 | .300 | .000 | .002 | .000 | .000 | .002 | .000 | ||||||
\(\varPsi _{Gw}\) | .397 | .939 | .000 | .015 | .000 | .015 | |||||||||
\(\varPsi _{K}\) | .397 | .000 | .000 |
Statistical evaluation. Wilcoxon test results for NC classifier.
\(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | \(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | \(\varPsi _{R}\) | \(\varPsi _{G}\) | \(\varPsi _{Gw}\) | \(\varPsi _{K}\) | \(\varPsi _{Kw}\) | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Nam. | MaFDR | MaFNR | MaF1 | ||||||||||||
Frd. | 3.149e−10 | 2.684e−04 | 4.529e−17 | ||||||||||||
Rank | 4.090 | 2.667 | 2.827 | 2.506 | 2.910 | 2.865 | 3.654 | 2.647 | 3.096 | 2.737 | 4.378 | 2.942 | 2.827 | 2.532 | 2.321 |
\(\varPsi _{R}\) | .000 | .000 | .000 | .000 | .057 | .651 | 1.00 | .651 | .000 | .000 | .000 | .000 | |||
\(\varPsi _{G}\) | 1.00 | .470 | 1.00 | .000 | .004 | .000 | 1.00 | .043 | .044 | ||||||
\(\varPsi _{Gw}\) | .171 | 1.00 | .225 | 1.00 | .044 | .043 | |||||||||
\(\varPsi _{K}\) | .043 | .056 | 1.00 | ||||||||||||
Nam. | MaMCC | MiF1 | MiMCC | ||||||||||||
Frd. | 5.340e−11 | 4.793e−20 | 4.001e−20 | ||||||||||||
Rank | 3.994 | 3.282 | 2.397 | 2.821 | 2.506 | 4.404 | 2.147 | 3.096 | 2.500 | 2.853 | 4.410 | 2.147 | 3.096 | 2.500 | 2.846 |
\(\varPsi _{R}\) | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | |||
\(\varPsi _{G}\) | .000 | .028 | .010 | .000 | .010 | .000 | .000 | .010 | .000 | ||||||
\(\varPsi _{Gw}\) | .310 | .979 | .001 | .010 | .001 | .010 | |||||||||
\(\varPsi _{K}\) | .310 | .001 | .001 |
5 Conclusions
This paper addresses the issue of tailoring the soft confusion matrix classifier to dealing with imbalanced data. Two concepts based on the change of the neighbourhood were proposed. The experimental results show that, in some circumstances, these approaches can improve the obtained classification quality. It shows that classifiers based on the RRC concept and SCM concept, in particular, are robust tools that can deal with various types of data. The other way of tailoring the SCM classifier to imbalanced data may be the modification of the P(i|x) probability distribution. This aspect should be studied carefully.
Footnotes
Notes
Acknowledgments
This work was supported by the statutory funds of the Department of Systems and Computer Networks, Wroclaw University of Science and Technology.
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