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Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection

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Part of the Lecture Notes in Computer Science book series (LNBI,volume 12074)

Abstract

Genome-wide association studies (GWAS) have been an important tool for susceptibility gene discovery in genetic disorders and investigating the interplay among multiple loci has played an imporatant role. Such interactions between two or more loci is called epistasis and it has a major role in complex genetic traits.

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References

  1. Cowman, T., Koyutürk, M.: Prioritizing tests of epistasis through hierarchical representation of genomic redundancies. Nucleic Acids Res. 45(14), e131–e131 (2017)

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  2. Yilmaz, S., Tastan, O., Cicek, E.: SPADIS: an algorithm for selecting predictive and diverse SNPs in GWAS. IEEE/ACM Trans. Comput. Biol. Bioinf. (2019). https://doi.org/10.1109/TCBB.2019.2935437

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Correspondence to A. Ercument Cicek .

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Caylak, G., Cicek, A.E. (2020). Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection. In: Schwartz, R. (eds) Research in Computational Molecular Biology. RECOMB 2020. Lecture Notes in Computer Science(), vol 12074. Springer, Cham. https://doi.org/10.1007/978-3-030-45257-5_22

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  • DOI: https://doi.org/10.1007/978-3-030-45257-5_22

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-45256-8

  • Online ISBN: 978-3-030-45257-5

  • eBook Packages: Computer ScienceComputer Science (R0)