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Nonlinearity and Biology

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Emerging Frontiers in Nonlinear Science

Part of the book series: Nonlinear Systems and Complexity ((NSCH,volume 32))

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Abstract

In this chapter we discuss the origin and role of nonlinearities in some classes of biological models. We describe underlying biological mechanisms that generate nonlinearities and how they have been modeled in subfields, such as ecology and epidemiology. We present examples of recent models to highlight the importance of indirect effects and the emergence of alternative stable states, and trade offs. At the same time, we emphasize recent developments and unresolved challenges in biological modeling, such as data-theory coupling, parameter estimation and the generalization of results from low- to high-dimensional systems. We finish with recent examples of mathematical models of the glucose-insulin regulatory system, cancer treatment, limb development and pattern formation, and DNA.

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References

  1. D.J.T. Sumpter, M. Beekman, Anim. Behav. 66, 273 (2003)

    Google Scholar 

  2. M.J. Ryan, R.A. Page, K.L. Hunter, R.C. Taylor, Anim. Behav. 147, 189 (2019)

    Google Scholar 

  3. M.J. Hatcher, J.T.A. Dick, A.M. Dunn, Ecol. Lett. 9, 1253 (2006)

    Google Scholar 

  4. E.E. Werner, S.D. Peacor, Ecology 84, 1083 (2003)

    Google Scholar 

  5. Z. Rapti, T.E. Stewart Merrill, B. Mueller-Brennan, J.H. Kavouras, C.E. Cáceres, Theor. Popul. Biol. 130, 132 (2019)

    Google Scholar 

  6. C.R. Bertram, M. Pinkowski, S.R. Hall, M.A. Duffy, C.E. Cáceres, Oecologia 173, 1023 (2013)

    ADS  Google Scholar 

  7. A. Lotka, Elements of Physical Biology (Williams and Wilkins, Baltimore, 1925)

    MATH  Google Scholar 

  8. V. Volterra, Mem. R. Accad. Naz. dei Lincei 2, 31 (1926)

    Google Scholar 

  9. C.S. Holling, Can. Entomol. 91, 385 (1959)

    Google Scholar 

  10. M.L. Rosenzweig, R.H. MacArthur, Amer. Nat. 97, 209 (1963)

    Google Scholar 

  11. J.H.P. Dawes, M.O. Souza, J. Theor. Biol. 327, 11 (2013)

    Google Scholar 

  12. P.A. Abrams, Amer. Nat. 121, 887 (1983)

    Google Scholar 

  13. J.S. Weitz, J. Dushoff, Theor. Ecol. 1, 13 (2008)

    Google Scholar 

  14. J. Grilli, G. Barabás. M.J. Michalska-Smith, S. Allesina, Nature 548, 210 (2017)

    ADS  Google Scholar 

  15. W.O. Kermack, A.G. McKendrick, Proc. R. Soc. A 115, 700 (1927)

    Google Scholar 

  16. H.W. Hethocote, SIAM Rev. 42, 599 (2000)

    ADS  MathSciNet  MATH  Google Scholar 

  17. J. Monod, Annu. Rev. Microbiol. 3, 371 (1949)

    Google Scholar 

  18. K.A. Johnson, R.S. Goody, Biochemistry 50, 8464 (2011)

    Google Scholar 

  19. S.M. Clifton, T. Kim, J.H. Chandrashekhar, G.A. O’Toole, Z. Rapti, R.J. Whitaker, mSystems 4, e00221-19 (2019)

    Google Scholar 

  20. L.A. Real, Amer. Nat. 111, 289 (1977)

    Google Scholar 

  21. A.V. Hill, J. Physiol. 40(Suppl.), i–vii (1910)

    Google Scholar 

  22. J.-D. Bézanet, M. Bischofberger, E. Tiecke, A. Gonçalves, J.F. Martin, A. Zuniga, F. Naef, R. Zeller, Science 323, 1050 (2009)

    ADS  Google Scholar 

  23. K.E. Sears, J.A. Maier, M. Rivas-Astroza, R. Poe, S. Zhong, K. Kosog, J.D. Marcot, R.R. Behringer, C.J. Cretekos, J.J. Rasweiler IV, Z. Rapti, PLoS Genet. 11, e1005398 (2015)

    Google Scholar 

  24. K.D. Lafferty. G. DeLeo, C.J. Briggs, A.P. Dobson, T. Gross, A.M. Kuris, Science 349, 854 (2015)

    ADS  Google Scholar 

  25. S. Estrela, C.H. Trisos, S.P. Brown, Amer. Nat. 180, 566–576 (2012)

    Google Scholar 

  26. C.E. Cáceres, G. Davis, S. Duple, S.R. Hall, A. Koss, P. Lee, Z. Rapti, Math. Biosci. 258, 148 (2014)

    Google Scholar 

  27. O.S. Venturelli, H. El-Samad, R.M. Murray, Proc. Natl. Acad. Sci. USA 109, E3324 (2012)

    Google Scholar 

  28. T.S. Gardner, C.R. Cantor, J.J. Collins, Nature 403, 339 (2000)

    ADS  Google Scholar 

  29. M. Beekman, D.J.T. Sumpter, F.L.W. Ratnieks, Proc. Natl. Acad. Sci. USA 98, 9703 (2001)

    Google Scholar 

  30. J.C. de Roode, A.J. Yates, S. Altizer, Proc. Natl. Acad. Sci. USA 105, 7489 (2008)

    Google Scholar 

  31. R.E. Lenski, R.M. May, J. Theor. Biol. 169, 253 (1994)

    Google Scholar 

  32. Z. Rapti, C.E. Cáceres, B. Math, Biol. 78, 235 (2016)

    Google Scholar 

  33. C.-J. Lin, K.A. Deger, J.H. Tien, Math. Biosci. 277, 15 (2016)

    Google Scholar 

  34. S. Alizon, Amer. Nat. 172, E113 (2008)

    Google Scholar 

  35. M.A. Gil, Ecology 94, 1871 (2013)

    Google Scholar 

  36. R.H. Condon, C.M. Duarte, K.A. Pitt, K.L. Robinson, C.H. Lucas, K.R. Sutherland, H.W. Mianzan, M. Bogeberg, J.E. Purcell, M.B. Decker, S-i. Uye, L.P. Madin, R.D. Brodeur, S.H.D. Haddock, A. Malej, G.D. Parry, E. Eriksen, J. Quiñones, M. Acha, M. Harvey, J.M. Arthur, W.M. Graham, Proc. Natl. Acad. Sci. USA 110, 1000 (2013)

    Google Scholar 

  37. R.M. May, Proc. Roy. Soc. Lond. B 228, 241 (1985)

    Google Scholar 

  38. N.N. Mangan, S.L. Brunton, J.L. Proctor, J.N. Kutz, I.E.E.E. Trans, Mol. Biol. Multi-Scale Commun. 2, 52 (2016)

    Google Scholar 

  39. Y.H. Kao, M. Eisenberg, Epidemics 25, 89 (2018)

    Google Scholar 

  40. W.J. Sutherland, R.P. Freckleton, H.C.J. Godfray, S.R. Beissinger, T. Benton, D.D. Cameron, Y. Carmel, D.A. Coomes, T. Coulson, M.C. Emmerson, R.S. Hails, G.C. Hays, D.J. Hodgson, M.J. Hutchings, D. Johnson, J.P.G. Jones, M.J. Keeling, H. Kokko, W.E. Kunin, X. Lambin, O.T. Lewis, Y. Mahli, N. Mieszkowska, E.J. Milner-Gullard, K. Norris, A.B. Phillimore, D.W. Purves, J.M. Reid, D.C. Reuman, K. Thompson, J.M.J. Travis, L.A. Turnbull, D.A. Wardle, T. Wiegand, J. Ecol. 101, 58 (2013)

    Google Scholar 

  41. K. Faust, L. Lahti, D. Gonze, W.M. de Vos, J. Raes, Curr. Opin. Microbiol. 25, 56 (2015)

    Google Scholar 

  42. C. Bandt, B. Pompe, Phys. Rev. Lett. 88, 174102 (2002)

    Google Scholar 

  43. Y. Cao, W-w. Tung, J.B. Gao, V.A. Protopopescu, L.M. Hively, Phys. Rev. E 70, 046217 (2004)

    Google Scholar 

  44. M. Zanin, L. Zunino, O.A. Rosso, D. Papo, Entropy 14, 1553 (2012)

    ADS  MATH  Google Scholar 

  45. P.J. Mumbly, A. Hastings, H.J. Edwards, Nature 450, 98 (2007)

    ADS  Google Scholar 

  46. M. Scheffer, S.H. Hosper, M.-L. Meijer, B. Moss, E. Jeppesen, Trends Ecol. Evol. 8, 275 (1993)

    Google Scholar 

  47. M. Scheffer, J. Bascompte, W.A. Brock, V. Brovkin, S.R. Carpenter, V. Dakos, H. Held, E.H. van Nes, M. Rietkerk, G. Sugihara, Nature 461, 53 (2009)

    ADS  Google Scholar 

  48. K. Meyer, A. Hoyer-Leitzel, S. Iams, I. Klusky, V. Lee, S. Ligtenberg, E. Bussmann, M.L. Zeeman, Nat. Sustain. 1, 671 (2018)

    Google Scholar 

  49. E.C. Lee, M.R. Kelly Jr., B.M. Ochocki, S.M. Akinwumi, K.E.S. Hamre, J.H. Tien, M.C. Eisenberg, J. Theor. Biol. 420, 68 (2017)

    Google Scholar 

  50. National Diabetes Statistics Report, 2017 (Centers for Disease Control and Prevention, U.S. Department of Health and Human Services, Atlanta, USA, 2017)

    Google Scholar 

  51. P. Palumbo, S. Ditlevsen, A. Bertuzzi, A. De Gaetano, Math. Biosci. 244, 69 (2013)

    Google Scholar 

  52. J. Li, Y. Kuang, SIAM J. Appl. Math. 67, 757 (2007)

    MathSciNet  MATH  Google Scholar 

  53. S.M. Kissler, C. Cichowitz, S. Sankaranarayanan, D.M. Bortz, J. Theor. Biol. 359, 101 (2014)

    Google Scholar 

  54. P.S. Shabestari, S. Panahi, B. Hatef, S. Jafari, J.C. Sprott, Chaos. Soliton Fract. 112, 44 (2018)

    Google Scholar 

  55. F. Bray, J. Ferlay, I. Soerjomataram, R.L. Siegel, L.A. Torre, A. Jemal, CA-Cancer J. Clin. 68, 394 (2018)

    Google Scholar 

  56. H.M. Byrne, Nat. Rev. Cancer 10, 221 (2010)

    Google Scholar 

  57. R.A. Gatenby, E.T. Gawlinksi, Cancer Res. 56, 5745 (1996)

    Google Scholar 

  58. G.J. Kimmel, F.L. Locke, P.M. Altrock, Evolutionary dynamics of CAR T cell therapy (2019). https://doi.org/10.1101/717074

  59. L.G. de Pillis, W. Gu, A.E. Radunskaya, J. Theor. Biol. 238, 841 (2006)

    Google Scholar 

  60. T. Alarcón, H.M. Byrne, P.K. Maini, J. Theor. Biol. 229, 395 (2004)

    Google Scholar 

  61. A.K. Barreiro, J.C. Bronski, Z. Rapti, SIAM J. Math. Anal. 51, 256 (2019)

    MathSciNet  MATH  Google Scholar 

  62. K.J. Painter, T. Hillen, J. Theor. Biol. 323, 25 (2013)

    Google Scholar 

  63. A.M. Turing, Phil. Trans. Royal Soc. B 237, 37 (1952)

    Google Scholar 

  64. J.D. Murray, Sci. Am. 258, 80 (1988)

    Google Scholar 

  65. J. Zhu, Y.T. Yang, M.S. Alber, S.A. Newman, PLoS ONE 5, e10892 (2010)

    ADS  Google Scholar 

  66. K. Onimaru, L. Marcon, M. Musy, M. Tanaka, J. Sharpe, Nat. Commun. 7, 11582 (2016)

    Google Scholar 

  67. A. Badugu, C. Kraemer, P. Germann, D. Menshykau, D. Iber, Sci. Rep. 2, 991 (2012)

    Google Scholar 

  68. Z. Rapti, M.A. Duennes, S.A. Cameron, Biol. J. Linn. Soc. 113, 384 (2014)

    Google Scholar 

  69. M. Peyrard, A.R. Bishop, Phys. Rev. Lett. 62, 2755 (1989)

    ADS  Google Scholar 

  70. M. Peyrard, Nonlinearity 17, R1 (2004)

    ADS  MathSciNet  MATH  Google Scholar 

  71. J. Cuevas-Maraver, P.G. Kevrekidis, in A Dynamical Perspective on the\(\phi ^4\)Model: Past, Present and Future, ed. by P.G. Kevrekidis, J. Cuevas-Maraver (Springer, Cham, 2019), p. 137

    Google Scholar 

  72. N.K. Voulgarakis, A. Redondo, A.R. Bihop, K.Ø. Rasmussen, Phys. Rev. Lett. 96, 248101 (2006)

    Google Scholar 

  73. L.V. Yakushevich, Nonlinear Physics of the DNA, 2nd edn. (Wiley, Hoboken, 2004)

    MATH  Google Scholar 

  74. T. Dauxois, M. Peyrard, A.R. Bishop, Phys. Rev. E 47, R44 (1993)

    ADS  MATH  Google Scholar 

  75. Z. Rapti, A. Smerzi, K.Ø. Rasmussen, A.R. Bishop, C.H. Choi, A. Usheva, Europhys. Lett. 74, 540 (2006)

    ADS  Google Scholar 

  76. Z. Rapti, A. Smerzi, K.Ø. Rasmussen, A.R. Bishop, C.H. Choi, A. Usheva, Phys. Rev. E 73, 051902 (2006)

    Google Scholar 

  77. Z. Rapti, K.Ø. Rasmussen, A.R. Bishop, J. Nonlinear Math. Phys. 18, 381 (2011)

    Google Scholar 

  78. C.H. Choi, Z. Rapti, V. Gelev, M.R. Hacker, B. Alexandrov, E.J. Park, J.S. Park, N. Horikoshi, A. Smerzi, K.Ø. Rasmussen, A.R. Bishop, A. Usheva, Biophys. J. 95, 597 (2008)

    Google Scholar 

  79. A. Krueger, E. Protozanova, M.D. Frank-Kamenetskii, Biophys. J. 90, 3091 (2006)

    Google Scholar 

  80. M.R. Kantorovitz, Z. Rapti, V. Gelev, A. Usheva, BMC Bioinform. 11, 604 (2010)

    Google Scholar 

  81. J. Cuevas-Maraver, P.G. Kevrekidis, D.E. Pelinovsky, Stud. Appl. Math. 137, 214 (2016)

    Google Scholar 

  82. Z. Rapti, Phys. Lett. A 377, 1543 (2013)

    Google Scholar 

  83. V. Koukouloyannis, P.G. Kevrekidis, J. Cuevas, V. Rothos, Phys. D 241, 16 (2013)

    Google Scholar 

  84. Z. Rapti, Eur. Phys. J. E 32, 209 (2010)

    Google Scholar 

  85. B.S. Alexandrov, V. Gelev, S.W. Yoo, L.B. Alexandrov, Y. Fukuyo, A.R. Bishop, K.Ø. Rasmussen, A. Usheva, Nucleic Acids Res. 38, 1790 (2010)

    Google Scholar 

  86. P. Maniadis, B.S. Alexandrov, A.R. Bishop, K.Ø. Rasmussen, Phys. Rev. E 83, 011904 (2011)

    Google Scholar 

  87. B. Blasius, L. Rudolf, G. Weithoff, U. Gaedke, G.F. Fussmann, Nature 577, 226 (2020)

    Google Scholar 

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Acknowledgements

We gratefully acknowledge support through grants NSF-DMS-1815764 and UIUC RB17060.

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Rapti, Z. (2020). Nonlinearity and Biology. In: Kevrekidis, P., Cuevas-Maraver, J., Saxena, A. (eds) Emerging Frontiers in Nonlinear Science. Nonlinear Systems and Complexity, vol 32. Springer, Cham. https://doi.org/10.1007/978-3-030-44992-6_1

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