Abstract
Heparanase is the principal enzyme that degrades heparan sulfate (HS) in both physiological (HS turnover) and pathological (tumor metastasis, inflammation) cell conditions, catalysing the hydrolysis of the β-1-4 glycosidic bond in -GlcUA-β(1-4)-GlcNX-. Despite efforts to define the minimum trisaccharide sequence that allows glycans to be recognized by heparanase, a rigorous “molecular code” by which the enzyme reads and degrades HS chains has not been identified. The X-ray diffraction model of heparanase, resolved by Wu et al (2015), revealed a complex between the trisaccharide GlcNS6S-GlcUA-GlcNS6S and heparanase. Efforts are ongoing to better understand how HS mimetics longer than three residues are recognized by heparanase before being hydrolyzed or inhibit the enzyme. It is also important to consider the flexibility of the enzyme active site, a feature that opens up the development of heparanase inhibitors with structures significantly different from HS or heparin. This chapter reviews the state-of-the-art knowledge about structural aspects of heparanase activities in terms of substrate recognition, mechanism of hydrolysis, and inhibition.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Ögren, S., & Lindahl, U. (1976). Cleavage of Macromolecular Heparin by an Enzyme from Mouse Mastocytoma. Biochemical Journal, 154(3), 605–611.
Vlodavsky, I., Friedmann, Y., Elkin, M., et al. (1999). Mammalian heparanase: Gene cloning, expression and function in tumor progression and metastasis. Nature Medicine, 5(7), 793–802.
Hulett, M. D., Freeman, C., Hamdorf, B. J., Baker, R. T., Harris, M. J., & Parish, C. R. (1999). Cloning of mammalian heparanase, an important enzyme in tumor invasion and metastasis. Nature Medicine, 5(7), 803–809.
Kussie, P. H., Hulmes, J. D., Ludwig, D. L., et al. (1999). Cloning and functional expression of a human heparanase gene. Biochemical and Biophysical Research Communications, 261(1), 183–187.
Fairbanks, M. B., Mildner, A. M., Leone, J. W., et al. (1999). Processing of the human heparanase precursor and evidence that the active enzyme is a heterodimer. The Journal of Biological Chemistry, 274(42), 29587–29590.
Toyoshima, M., & Nakajima, M. (1999). Human heparanase. Purification, characterization, cloning, and expression. The Journal of Biological Chemistry, 274(34), 24153–24160.
Mackenzie, E., Tyson, K., Stamps, A., et al. (2000). Cloning and expression profiling of Hpa2, a novel mammalian heparanase family member. Biochemical and Biophysical Research Communications, 276(3), 1170–1177.
Rivara, S., Milazzo, F. M., & Giannini, G. (2016). Heparanase: A rainbow pharmacological target associated to multiple pathologies including rare diseases. Future Medicinal Chemistry, 8(6), 647–680.
Yates, E. A., Gallagher, J. T., & Guerrini, M. (2019). Introduction to the molecules special edition entitled ‘Heparan Sulfate and heparin: Challenges and controversies’: Some outstanding questions in Heparan Sulfate and heparin research. Molecules, 24(7), 1399. https://doi.org/10.3390/molecules24071399.
Wu, L., Viola, C. M., Brzozowski, A. M., & Davies, G. J. (2015). Structural characterization of human heparanase reveals insights into substrate recognition. Nature Structure And Molecular Biology, 22(12), 1016–1023.
Davies, G., & Henrissat, B. (1995). Structure and mechanisms of glycosyl hydrolases. Current Opinion in Structural Biology, 3(9), 853–859.
Pikas, D. S., Li, J. P., Vlodavsky, I., & Lindahl, U. (1998). Substrate specificity of heparanases from human hepatoma and platelets. The Journal of Biological Chemistry, 273, 18770–18777.
Okada, Y., Yamada, S., Toyoshima, M., Dong, J., Nakajima, M., & Sugahara, K. (2002). Structural recognition by recombinant human heparanase that plays critical roles in tumor metastasis. Hierarchical sulfate groups with different effects and the essential target disulfated trisaccharide sequence. The Journal of Biological Chemistry, 277, 42488–42495.
Davies, G. J., Wilson, K. S., & Henrissat, B. (1997). Nomenclature for sugar-binding subsites in Glycosyl hydrolases. The Biochemical Journal, 321, 557–559.
Bisio, A., Mantegazza, A., Urso, E., Naggi, A., Torri, G., Viskov, C., & Benito, C. (2007). High-performance liquid chromatographic/mass spectrometric studies on the susceptibility of heparin species to cleavage by Heparanase. Seminars in Thrombosis and Hemostasis, 33, 488–495.
Peterson, S. B., & Liu, J. (2010). Unraveling the specificity of Heparanase UtilizingSynthetic substrates. The Journal of Biological Chemistry, 285, 14504–14513.
Vlodavsky, I., Ilan, N., Naggi, A., & Casu, B. (2007). Heparanase: Structure, biological functions, and inhibition by heparin-derived mimetics of heparan sulfate. Current Pharmaceutical Design, 13(20), 2057–2073.
Hulett, M. D., Hornby, J. R., Ohms, S. J., Zuegg, J., Freeman, C., Gready, J. E., & Parish, C. R. (2000). Identification of active-site residues of the pro-metastatic endoglycosidase heparanase. Biochemistry, 39, 15659–15667.
Zhou, Z., Bates, M., & Madura, J. D. (2006). Structure Modeling, ligand binding, and binding affinity calculation (LR-MM-PBSA) of human Heparanase for inhibition and drug design. Proteins, 65, 580–592.
Courtney, S. M., Hay, P. A., Buck, R. T., Colville, C. S., Porter, D. W., Scopes, D. I. C., & Pollard, F. C. PageMJ, Bennett JM, Hircock ML,McKenzie EA,Stubberfield CR, Turner PR. (2004) 2,3-Dihydro-1,3-dioxo-1H-isoindole-5-carboxylic acid derivatives: A novel class of small molecule heparanase inhibitors. Bioorganic & Medicinal Chemistry Letters, 14, 3269–3273.
Courtney, S. M., Hay, P. A., Buck, R. T., Colville, C. S., Phillips, D. J., Scopes, D. I. C., Pollard, F. C., Page, M. J., Bennett, J. M., Hircock, M. L., McKenzie, E. A., Bhaman, M., Felix, R., Stubberfield, C. R., & Turner, P. R. (2005). Furanyl-1,3-thiazol-2-yl and benzoxazol-5-ylacetic acid derivatives: Novel classes of heparanase inhibitor. Bioorganic & Medicinal Chemistry Letters, 15, 2295–2299.
Sapay, N., Cabannes, E., Petitou, M., & Imberty, A. (2012). Molecular model of human Heparanase with proposed binding mode of a Heparan Sulfate oligosaccharide and catalytic amino acids. Biopolymers, 97(1), 21–34.
Gandhi, N. S., Freeman, C., Parish, C. R., & Mancera, R. L. (2012). Computational analyses of the catalytic and heparin-binding sites and their interactions with glycosaminoglycans in glycoside hydrolase family 79 endo-β-D-glucuronidase (heparanase). Glycobiology, 22(1), 35–55.
Parish, C. R., Freeman, C., & Hulett, M. D. (2001). Heparanase: A key enzyme involved in cell invasion. Biochimica et Biophysica Acta, 1471, M99–M108.
Ferro, V., Dredge, K., Liu, L., Hammond, E., Bytheway, I., Li, C., Johnstone, K., Karoli, T., Davis, K., Copeman, E., et al. (2007). PI-88 and novel heparan sulfate mimetics inhibit angiogenesis. Seminars in Thrombosis and Hemostasis, 33, 557–568.
Pala, D., Rivara, S., Mor, M., Milazzo, F. M., Roscilli, G., Pavoni, E., & Giannini, G. (2016). Kinetic analysis and molecular modeling of the inhibition mechanism of roneparstat (SST0001) on human heparinase. Glycobiology, 26, 640–654.
Elli S., Guerrini M., Casu B., Naggi A., Torri G., Livnah O., Vlodavsky I., Sanderson R. D., Valerio A., Vismara E. (2011) A Computational approach for chemical and physical characterization of heparan sulphate like oligosaccharides as Heparanase inhibitors Oral presentation at CDDD conference Dompé Research Centre Italy, L’Aquila Nov. 21-23.
Vlodavsky, I., Singh, P., Boyango, I., Gutter-Kapon, L., Elkin, M., Sanderson, R. D., & Ilan, N. (2016). Heparanase: From basic research to therapeutic applications in cancer and inflammation. Drug Resistance Updates, 29, 54–75.
Nardella, C., Lahm, A., Pallaoro, M., Brunetti, M., Vannini, A., & Steinkühler, C. (2004). Mechanism of Activation of Human Heparanase Investigated by Protein Engineering. Biochemistry, 43(7), 1862–1873.
Levy-Adam, F., Abboud-Jarrous, G., Guerrini, M., Beccati, D., Vlodavsky, I., & Ilan, N. (2005). Identification and characterization of heparin/Heparan SulfateBinding domains of the Endoglycosidase Heparanase. The Journal of Biological Chemistry, 280, 20457–20466.
Case, D. A., Darden, T. A., Cheatham, T. E., III, Simmerling, C. L., Wang, J., Duke, R. E., Luo, R., Walker, R. C., Zhang, W., Merz, K. M., Roberts, B. P., Wang, B., Hayik, S., Roitberg, A., Seabra, G., Kolossvai, I., Wong, K. F., Paesani, F., Vanicek, J., Liu, J., Wu, X., Brozell, S. R., Steinbrecher, T., Gohlke, H., Cai, Q., Ye, J., Wang, J., Hsieh, M.-J., Cui, G., Roe, D. R., Mathews, D. H., Seetin, M. G., Sagui, C., Babin, V., Luchko, T., Gusarov, S., Kovalenko, A., & Kollman, P. A. (2010). AMBER 11. San Francisco: University of California.
Kirschner, K. N., Yongye, A. B., Tschampel, S. M., González-Outeiriño, J., Daniels, C. R., Foley, B. L., & Woods, R. J. (2008). GLYCAM06: A generalizable biomolecular force field. Carbohydrates. Journal of Computational Chemistry, 29, 622–655.
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kale, L., & Schulten, K. (2005). Scalable molecular dynamics with NAMD. Journal of Computational Chemistry, 26, 1781–1802.
Xu, Y., Masuko, S., Takieddin, M., Xu, H., Liu, R., Jing, J., Mousa, S. A., Linhardt, R. J., & Liu, J. (2011). Chemoenzymatic synthesis of homogeneous ultralow molecular weight heparins. Science, 334(6055), 498–501.
Stancanelli, E., Elli, S., Hsieh, P. H., Liu, J., & Guerrini, M. (2018). Recognition and conformational properties of an alternative Antithrombin binding sequence obtained by Chemoenzymatic synthesis. Chembiochem, 19, 1178–1188.
Mulloy, B., Foster, M. J., Jones, C., & Davies, D. B. (1993). N.m.r. and molecular-modelling studies of the solution conformation of heparin. Biochem. J., 293, 849–858.
Bisio, A., Mantegazza, A., Urso, E., Naggi, A., Torri, G., Viskov, C., & Casu, B. (2007). High-performance liquid chromatographic/mass spectrometric studies on the susceptibility of heparin species to cleavage by heparanase. Seminars in Thrombosis and Hemostasis, 33, 488–495.
Naggi, A., Casu, B., Perez, M., Torri, G., Cassinelli, G., Penco, S., Pisano, C., Giannini, G., Ishai-Michaeli, R., & Vlodavsky, I. (2005). Modulation of the heparanase-inhibiting activity of heparin through selective desulfation, graded N-acetylation, and glycol splitting. The Journal of Biological Chemistry, 280, 12103–12113.
Casu B, Guerrini M, Naggi A., Perez M., Torri G., Ribatti D., Carminati P., Giannini G., Penco SD., Pisano C., Belleri M. Rusnati M., Presta M. (2002) Short Heparin Sequences Spaced by Glycol-Split Uronate Residues Are Antagonists of Fibroblast Growth Factor 2 and Angiogenesis Inhibitors Biochemistry 41:10519-10528.
Ni, M., Elli, S., Naggi, A., Guerrini, M., Torri, G., & Petitou, M. (2016). Investigating glycol-Split-heparin-derived inhibitors of Heparanase: A study of synthetic Trisaccharides. Molecules, 21(11), 1602. https://doi.org/10.3390/molecules21111602.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2020 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Elli, S., Guerrini, M. (2020). Molecular Aspects of Heparanase Interaction with Heparan Sulfate, Heparin and Glycol Split Heparin. In: Vlodavsky, I., Sanderson, R., Ilan, N. (eds) Heparanase. Advances in Experimental Medicine and Biology, vol 1221. Springer, Cham. https://doi.org/10.1007/978-3-030-34521-1_6
Download citation
DOI: https://doi.org/10.1007/978-3-030-34521-1_6
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-34520-4
Online ISBN: 978-3-030-34521-1
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)