Skip to main content

Rabies Outbreak Prediction Using Deep Learning with Long Short-Term Memory

  • Conference paper
  • First Online:
Emerging Trends in Intelligent Computing and Informatics (IRICT 2019)

Abstract

The purpose of this article is to evaluate the Long Short-Term Memory (LSTM) model performance for rabies outbreak prediction (ROP). Successful forecasting of the initial epidemic outbreaks can decrease the incidence of the ailment and save lives, but this type of research is costly, and an erroneous result can trigger false alarms, and the trustworthiness of the warning system will be at stake. As such, biosurveillance system developers are looking for highly sensitive outbreak prediction algorithms that will minimise the number of false alarms. Using the epidemiological data such as those of rabies to forecast novel and vital directions is a significant issue of public health, and it involves the collective attention of the machine learning (ML) communities. In this study, the data are obtained from HealthData.com and utilised for the performance evaluation of the LSTM algorithm. The algorithm performance is evaluated based on Root Mean Square Error (RMSE) and Accuracy, and compared with that of the traditional algorithm– the Autoregressive integrated moving average (ARIMA) model. The results from this research prove that a deep learning LSTM network can predict the disease prevalence, using the rabies datasets, with a good accuracy. The performance of the proposed model is evaluated by comparing with the ARIMA model. The LSTM model attains the best result with 97.10% accuracy, while the traditional ARIMA obtains 72.10%. Moreover, the LSTM model scores the lowest value of RMSE (2.04) compared with the ARIMA model which scores the highest (3.12). Through this study, it is obvious that the LSTM prediction model is an effective method for determining this viral disease, evidenced by a very low RMSE value and a high accuracy score.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Hemachudha, T., Ugolini, G., Wacharapluesadee, S., Sungkarat, W., Shuangshoti, S., Laothamatas, J.: Human rabies: neuropathogenesis, diagnosis, and management. Lancet Neurol. 12(5), 498–513 (2013)

    Article  Google Scholar 

  2. Hampson, K., Coudeville, L., Lembo, T., Sambo, M., Kieffer, A., Attlan, M., et al.: Estimating the global burden of endemic canine rabies. PLoS Negl. Trop. Dis. 9(4), e0003709 (2015). https://doi.org/10.1371/journal.pntd.0003709

    Article  Google Scholar 

  3. Kole, A.K., Roy, R., Kole, D.C.: Human rabies in India: a problem needing more attention (2014)

    Google Scholar 

  4. Ramos, J.M., Melendez, N., Reyes, F., Gudiso, G., Biru, D., Fano, G., et al.: Epidemiology of animal bites and other potential rabies exposures and anti-rabies vaccine utilization in a rural area in Southern Ethiopia (2015)

    Google Scholar 

  5. Bueno-Marí, R., Almeida, A.P.G., Navarro, J.C.: Emerging zoonoses: eco-epidemiology, involved mechanisms and public health implications. Front. Publ. Health. 3, 157 (2015)

    Google Scholar 

  6. Sparkes, J., Fleming, P.J.S., Ballard, G., Scott-Orr, H., Durr, S., Ward, M.P.: Canine rabies in Australia: a review of preparedness and research needs. Zoonoses Publ. Health 62, 237 (2014)

    Article  Google Scholar 

  7. Mähl, P., Cliquet, F., Guiot, A.L., Niin, E., Fournials, E., Saint-Jean, N., Aubert, M., Rupprecht, C.E., Gueguen, S.: Twenty-year experience of the oral rabies vaccine SAG2 in wildlife: a global review. Vet. Res. 45(1), 77 (2014)

    Article  Google Scholar 

  8. Wu, Y., Yang, Y., Nishiura, H., Saitoh, M.: Deep learning for epidemiological predictions. In: SIGIR, (2018). Ann. Agricul. Environ. Med. AAEM 22(1), 76–79. https://doi.org/10.5604/12321966.1141372

  9. Fricker, R.: Some methodological issues in biosurveillance. Stat. Med. 30, 403–415 (2011)

    Article  MathSciNet  Google Scholar 

  10. H, Bamaiyi: 2015 outbreak of canine rabies in malaysia: review, analysis and perspectives. J. Vet. Adv. 5(12), 1181 (2015). https://doi.org/10.5455/jva.19691231040000

    Article  Google Scholar 

  11. He, J., Luo, L., Jin, R.G., Li, J.M.: The application of ARIMA in forecasting the cases of rabies in China different human groups. Zhonghua lao dong wei sheng zhi ye bing za zhi = Zhonghua laodong weisheng zhiyebing zazhi = Chin. J. Ind. Hygiene Occup. Dis. 36(7), 512–515 (2018)

    Google Scholar 

  12. Chae, S., Kwon, S., Lee, D.: Predicting infectious disease using deep learning and big data. Int. J. Environ. Res. Public Health 15(8), 1596 (2018). https://www.ncbi.nlm.nih.gov/pubmed/30060525

  13. Wu, Y., Yang, Y., Nishiura, H., Saitoh, M.: Deep learning for epidemiological predictions. In: SIGIR (2018)

    Google Scholar 

  14. Zhang, Q., Yang, L.T., Chen, Z., Li, P.: A survey on deep learning for big data. Inform. Fusion 42, 146–157 (2018)

    Article  Google Scholar 

  15. Saleh, A.Y., Tei, R.: Flood prediction using seasonal autoregressive integrated moving average (SARIMA) model. Int. J. Innov. Technol. Explor. Eng. 8(8), 1037–1042 (2019)

    Google Scholar 

  16. Saleh, A.Y., Francis, C.: A deep learning approach to Malware detection in android platform. Int. J. Innov. Technol. Explor. Eng. 8(8), 1043–1048 (2019)

    Google Scholar 

  17. LeCun, Y., Bengio, Y., Hinton, G.: Deep learning; Nature Publishing Group, a division of Macmillan Publishers Limited, 28 May 2015. https://doi.org/10.1038/nature14539

  18. Staudemeyer, R.C.: Evaluating performance of long short-term memory recurrent neural networks on intrusion detection data, October 2013

    Google Scholar 

  19. Brownlee, J.: Time series prediction with lstm recurrent neural networks in python with keras, p. 18 (2016). machinelearningmastery.com

  20. Bao, W., Yue, J., Rao, Y.: A deep learning framework for financial time series using stacked autoencoders and long-short term memory. PLoS One 12, e0180944 (2017). https://doi.org/10.1371/journal.pone.0180944

    Article  Google Scholar 

  21. Alex, G.: Supervised Sequence Labelling with Recurrent Neural Networks; Studies in Computational Intelligence. Springer, Berlin (2012)

    MATH  Google Scholar 

  22. Rouse, M.: What is data preparation? - Definition from WhatIs.com, January. 2018. https://searchbusinessanalytics.techtarget.com/definition/data-preparation

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Abdulrazak Yahya Saleh .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2020 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Saleh, A.Y., Medang, S.A., Ibrahim, A.O. (2020). Rabies Outbreak Prediction Using Deep Learning with Long Short-Term Memory. In: Saeed, F., Mohammed, F., Gazem, N. (eds) Emerging Trends in Intelligent Computing and Informatics. IRICT 2019. Advances in Intelligent Systems and Computing, vol 1073. Springer, Cham. https://doi.org/10.1007/978-3-030-33582-3_32

Download citation

Publish with us

Policies and ethics