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Covariance Shrinkage for Dynamic Functional Connectivity

  • Nicolas HonnoratEmail author
  • Ehsan Adeli
  • Qingyu Zhao
  • Adolf Pfefferbaum
  • Edith V. Sullivan
  • Kilian Pohl
Conference paper
  • 664 Downloads
Part of the Lecture Notes in Computer Science book series (LNCS, volume 11848)

Abstract

The tracking of dynamic functional connectivity (dFC) states in resting-state fMRI scans aims to reveal how the brain sequentially processes stimuli and thoughts. Despite the recent advances in statistical methods, estimating the high dimensional dFC states from a small number of available time points remains a challenge. This paper shows that the challenge is reduced by linear covariance shrinkage, a statistical method used for the estimation of large covariance matrices from small number of samples. We present a computationally efficient formulation of our approach that scales dFC analysis up to full resolution resting-state fMRI scans. Experiments on synthetic data demonstrate that our approach produces dFC estimates that are closer to the ground-truth than state-of-the-art estimation approaches. When comparing methods on the rs-fMRI scans of 162 subjects, we found that our approach is better at extracting functional networks and capturing differences in rs-fMRI acquisition and diagnosis.

Notes

Acknowledgements

This research work was funded by the National Institute on Alcohol Abuse and Alcoholism (NIAAA) under the grants AA005965, AA013521, AA010723, and AA026762.

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Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  • Nicolas Honnorat
    • 1
    Email author
  • Ehsan Adeli
    • 2
  • Qingyu Zhao
    • 2
  • Adolf Pfefferbaum
    • 1
    • 2
  • Edith V. Sullivan
    • 2
  • Kilian Pohl
    • 1
    • 2
  1. 1.SRI InternationalMenlo ParkUSA
  2. 2.Department of Psychiatry and Behavioral SciencesStanford UniversityPalo AltoUSA

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