Skip to main content

Deep Learning Within a Priori Temporal Feature Spaces for Large-Scale Dynamic MR Image Reconstruction: Application to 5-D Cardiac MR Multitasking

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 (MICCAI 2019)

Abstract

High spatiotemporal resolution dynamic magnetic resonance imaging (MRI) is a powerful clinical tool for imaging moving structures as well as to reveal and quantify other physical and physiological dynamics. The low speed of MRI necessitates acceleration methods such as deep learning reconstruction from under-sampled data. However, the massive size of many dynamic MRI problems prevents deep learning networks from directly exploiting global temporal relationships. In this work, we show that by applying deep neural networks inside a priori calculated temporal feature spaces, we enable deep learning reconstruction with global temporal modeling even for image sequences with >40,000 frames. One proposed variation of our approach using dilated multi-level Densely Connected Network (mDCN) speeds up feature space coordinate calculation by 3000x compared to conventional iterative methods, from 20 min to 0.39 s. Thus, the combination of low-rank tensor and deep learning models not only makes large-scale dynamic MRI feasible but also practical for routine clinical application (This work was supported by NIH 1R01EB028146).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Schlemper, J., Caballero, J., Hajnal, J.V., Price, A.N., Rueckert, D.: A deep cascade of convolutional neural networks for dynamic MR image reconstruction. IEEE Trans. Med. Imaging 37, 491–503 (2018)

    Article  Google Scholar 

  2. Qin, C., Schlemper, J., Caballero, J., Price, A.N., Hajnal, J.V., Rueckert, D.: Convolutional recurrent neural networks for dynamic MR image reconstruction. IEEE Trans. Med. Imaging 38, 280–290 (2019)

    Article  Google Scholar 

  3. Biswas, S., Aggarwal, H.K., Jacob, M.: Dynamic MRI using model-based deep learning and SToRM priors: MoDL-SToRM. Mag. Reson. Med. 82(1), 485–494 (2019)

    Article  Google Scholar 

  4. Feng, L., Axel, L., Chandarana, H., Block, K.T., Sodickson, D.K., Otazo, R.: XD-GRASP: golden-angle radial MRI with reconstruction of extra motion-state dimensions using compressed sensing. Mag. Reson. Med. 75, 775–788 (2016)

    Article  Google Scholar 

  5. Cheng, J.Y., et al.: Comprehensive multi-dimensional MRI for the simultaneous assessment of cardiopulmonary anatomy and physiology. Sci. Rep. 7, 5330 (2017)

    Article  Google Scholar 

  6. Christodoulou, A.G.: Magnetic resonance multitasking for motion-resolved quantitative cardiovascular imaging. Nat. Biomed. Eng. 2, 215–226 (2018)

    Article  Google Scholar 

  7. Liang, Z.-P.: Spatiotemporal imaging with partially separable functions. In: Proceedings of the IEEE International Symposium Biomed Imaging, pp. 988–991 (2007)

    Google Scholar 

  8. Lingala, S.G., Hu, Y., DiBella, E., Jacob, M.: Accelerated dynamic MRI exploiting sparsity and low-rank structure: k-t SLR. IEEE Trans. Med. Imaging 30, 1042–1054 (2011)

    Article  Google Scholar 

  9. Zhao, B., Haldar, J.P., Christodoulou, A.G., Liang, Z.-P.: Image reconstruction from highly undersampled (k, t)-space data with joint partial separability and sparsity constraints. IEEE Trans. Med. Imaging 31, 1809–1820 (2012)

    Article  Google Scholar 

  10. Poddar, S., Jacob, M.: Dynamic MRI Using SmooThness Regularization on Manifolds (SToRM). IEEE Trans. Med. Imaging 35, 1106–1115 (2016)

    Article  Google Scholar 

  11. Bengio, Y., Courville, A., Vincent, P.: Representation learning: a review and new perspectives. IEEE Trans. Pattern Anal. Mach. Intell. 35, 1798–1828 (2013)

    Article  Google Scholar 

  12. Shaw, J.L.: Free-breathing, non-ECG, continuous myocardial T1 mapping with cardiovascular magnetic resonance Multitasking. Mag. Reson. Med. 81, 2450–2463 (2019)

    Article  Google Scholar 

  13. Chen, Y., Shi, F., Christodoulou, A.G., Xie, Y., Zhou, Z., Li, D.: Efficient and accurate mri super-resolution using a generative adversarial network and 3D multi-level densely connected network. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11070, pp. 91–99. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00928-1_11

    Chapter  Google Scholar 

  14. Jégou, S., Drozdzal, M., Vazquez, D., Romero, A., Bengio, Y.: The one hundred layers tiramisu: Fully convolutional densenets for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 11–19 (2017)

    Google Scholar 

  15. Clevert, D.-A., Unterthiner, T., Hochreiter, S.: Fast and accurate deep network learning by exponential linear units (elus). arXiv preprint arXiv:1511.07289 (2015)

  16. Kali, A., et al.: Native T1 mapping by 3-T CMR imaging for characterization of chronic myocardial infarctions. JACC Cardiovasc. Imaging 8(9), 1019–1030 (2015)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yuhua Chen .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Chen, Y., Shaw, J.L., Xie, Y., Li, D., Christodoulou, A.G. (2019). Deep Learning Within a Priori Temporal Feature Spaces for Large-Scale Dynamic MR Image Reconstruction: Application to 5-D Cardiac MR Multitasking. In: Shen, D., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. MICCAI 2019. Lecture Notes in Computer Science(), vol 11765. Springer, Cham. https://doi.org/10.1007/978-3-030-32245-8_55

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-32245-8_55

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-32244-1

  • Online ISBN: 978-3-030-32245-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics