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Machine Learning for Performance Enhancement of Molecular Dynamics Simulations

  • JCS Kadupitiya
  • Geoffrey C. Fox
  • Vikram JadhaoEmail author
Conference paper
Part of the Lecture Notes in Computer Science book series (LNCS, volume 11537)

Abstract

We explore the idea of integrating machine learning with simulations to enhance the performance of the simulation and improve its usability for research and education. The idea is illustrated using hybrid OpenMP/MPI parallelized molecular dynamics simulations designed to extract the distribution of ions in nanoconfinement. We find that an artificial neural network based regression model successfully learns the desired features associated with the output ionic density profiles and rapidly generates predictions that are in excellent agreement with the results from explicit molecular dynamics simulations. The results demonstrate that the performance gains of parallel computing can be further enhanced by using machine learning.

Keywords

Machine learning Molecular dynamics simulations Parallel computing Scientific computing Clouds 

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Copyright information

© Springer Nature Switzerland AG 2019

Authors and Affiliations

  1. 1.Intelligent Systems EngineeringIndiana UniversityBloomingtonUSA

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