Abstract
Horizontal gene transfer (HGT) transmits genetic material across species via more than ten possible mechanisms in nature. HGT is well studied, and accumulated evidence shows that HGT has contributed to transfer of genetic material and the evolution of the plant genome. This evolution in the plant genome aids plants in adapting to changing environment conditions. In this chapter we focus on the mechanism of contacts between two species, vectors, and acquisition of genetic elements, and also discuss the possible impacts on the evolution of plants.
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References
Alcázar R, Altabella T, Marco F, Bortolotti C, Reymond M, Koncz C, Carrasco P, Tiburcio A (2010) Polyamines: molecules with regulatory functions in plant abiotic stress tolerance. Planta (Berl) 231(6):1237–1249
Anderson MT, Seifert HS (2011) Opportunity and means: horizontal gene transfer from the human host to a bacterial pathogen. MBio 2(1):5–11
Andersson JO (2005) Lateral gene transfer in eukaryotes. CMLS (Cell Mol Life Sci) 62(11):1182–1197
Andersson JO, Sjögren ÅM, Davis LA, Embley TM, Roger AJ (2003) Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes. Curr Biol 13(2):94–104
Andika IB, Wei S, Cao C, Salaipeth L, Kondo H, Sun L (2017) Phytopathogenic fungus hosts a plant virus: a naturally occurring cross-kingdom viral infection. Proc Natl Acad Sci 114(46):12267–12272
Arber W (2008) Molecular mechanisms driving darwinian evolution. Math Comput Model 47(7–8):666–674
Archibald JM, Richards TA (2010) Gene transfer: anything goes in plant mitochondria. BMC Biol 8(1):147
Ayliffe MA, Agostino A, Clarke BC, Furbank R, von Caemmerer S, Pryor AJ (2009) Suppression of the barley uroporphyrinogen III synthase gene by a ds activation tagging element generates developmental photosensitivity. Plant Cell 21(3):814–831
Babić A, Lindner AB, Vulić M, Stewart EJ, Radman M (2008) Direct visualization of horizontal gene transfer. Science 319(5869):1533–1536
Bansal AK, Meyer TE (2002) Evolutionary analysis by whole-genome comparisons. J Bacteriol 184(8):2260–2272
Bergthorsson U, Adams KL, Thomason B, Palmer JD (2003) Wide spread horizontal transfer of mitochondrial genes in flowering plants. Nature 424(6945):197–201
Bock R (2010) The give-and-take of DNA: horizontal gene transfer in plants. Trends Plant Sci 15(1):11–22
Bonen L (2006) Mitochondrial genes leave home. New Phytol 172(3):379–381
Brennicke A, Grohmann L, Hiesel R, Knoop V, Schuster W (1993) The mitochondrial genome on its way to the nucleus: different stages of gene transfer in higher plants. FEBS Lett 325(1–2):140–145
Broothaerts W, Mitchell HJ, Weir B, Kaines S, Smith LMA, Yang W, Mayer JE, Roa-Rodriguez C, Jefferson RA (2005) Gene transfer to plants by diverse species of bacteria. Nature 433(7026):629–633
Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, Bera J, Weaver B, Jin S, Johri S, Reardon M, Webb K, Hill J, Moffat K, Tallon L, Van Aken S, Lewis M, Utterback T, Feldblyum T, Zismann V, Iobst S, Hsiao J, de Vazeille AR, Salzberg SL, White O, Fraser C, Yu Y, Kim H, Rambo T, Currie J, Collura K, Kernodle-Thompson S, Wei F, Kudrna K, Ammiraju JS, Luo M, Goicoechea JL, Wing RA, Henry D, Oates R, Palmer M, Pries G, Saski C, Simmons J, Soderlund C, Nelson W, de la Bastide M, Spiegel L, Nascimento L, Huang E, Preston R, Zutavern T, Palmer L, O’Shaughnessy A, Dike S, WR MC, Minx P, Cordum H, Wilson R, Jin W, Lee HR, Jiang J, Jackson S, Rice Chromosome 3 Sequencing Consortium (2005) Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Res 15(9):1284–1291
Bukhalid RA, Takeuchi T, Labeda D, Loria R (2002) Horizontal transfer of the plant virulence gene, nec1, and flanking sequences among genetically distinct Streptomyces strains in the diastatochromo genes cluster. Appl Environ Microbiol 68(2):738–744
Burger G, Lang BF (2003) Parallels in genome evolution in mitochondria and bacterial symbionts. IUBMB Life 55(4–5):205–212
Capy P, Loreto ELS, Carareto CMA (2008) Revisiting horizontal transfer of transposable elements in Drosophila. Heredity 100(6):545
Cheng Y, Dai X, Zhao Y (2006) Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev 20(13):1790–1799
Christin PA, Edwards EJ, Besnard G, Boxall SF, Gregory R, Kellogg EA, Hartwell J, Osborne CP (2012) Adaptive evolution of C4 photosynthesis through recurrent lateral gene transfer. Curr Biol 22(5):445–449
Copley SD, Dhillon JK (2002) Lateral gene transfer and parallel evolution in the history of glutathione biosynthesis genes. Genome Biol Res 3(5):0025–0021
Cullis CA, Vorster BJ, Van Der Vyver C, Kunert KJ (2008) Transfer of genetic material between the chloroplast and nucleus: how is it related to stress in plants? Ann Bot 103(4):625–633
Czislowski E, Fraser-Smith S, Zander M, O’Neill WT, Meldrum RA, Tran-Nguyen LTT, Batley J, Aitken EAB (2018) Investigation of the diversity of effector genes in the banana pathogen, Fusarium oxysporum f. sp. cubense, reveals evidence of horizontal gene transfer. Mol Plant Pathol 19(5):1155–1171
Danchin EG, Rosso MN, Vieira P, de Almeida-Engler J, Coutinho PM, Henrissat B, Abad P (2010) Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. Proc Natl Acad Sci 107(41):17651–17656
Dante RA, Neto GC, Leite A, Yunes JA, Arruda P (1999) The DapA gene encoding the lysine biosynthetic enzyme dihydrodipicolinate synthase from Coix lacryma-jobi: cloning, characterization, and expression analysis. Plant Mol Biol 41(4):551–561
Davidsen T, Rødland EA, Lagesen K, Seeberg E, Rognes T, Tønjum T (2004) Biased distribution of DNA uptake sequences towards genome maintenance genes. Nucleic Acids Res 32(3):1050–1058
Davis CC, Wurdack KJ (2004) Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from malpighiales. Science 305(5684):676–678
Davis CC, Anderson WR, Wurdack KJ (2005) Gene transfer from a parasitic flowering plant to a fern. Proc R Soc Lond B Biol Sci 272(1578):2237–2242
de Wit PJ, Mehrabi R, Bahkali AH (2011) Horizontal gene and chromosome transfer in plant pathogenic fungi affecting host range. FEMS Microbiol Rev 35(3):542–554
Diao X, Freeling M, Lisch D (2005) Horizontal transfer of a plant transposon. PLoS Biol 4(1):e5
Diao Y, Qi Y, Ma Y, Xia A, Sharakhov I, Chen X, Biedler J, Ling E, Jake Tu Z (2011) Next-generation sequencing reveals recent horizontal transfer of a DNA transposon between divergent mosquitoes. PLoS One 6(2):16743
Doolittle WF (1998) You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 14(8):307–311
Dotto BR, Carvalho EL, Silva AF (2015) HTT-DB: horizontally transferred transposable elements database. Bioinformatics 31(17):2915–2917
El Baidouri M, Carpentier MC, Cooke R (2014) Widespread and frequent horizontal transfers of transposable elements in plants. Genome Res 24(5):831–838
Emmermann M, Braun HP, Schmitz UK (1991) The ADP/ATP translocator from potato has a long amino-terminal extension. Curr Genet 20(5):405–410
Feder ME (2007) Evolvability of physiological and biochemical traits: evolutionary mechanisms including and beyond single-nucleotide mutation. J Exp Biol 210(9):1653–1660
Feschotte C, Wessler SR (2002) Mariner-like transposases are widespread and diverse in flowering plants. Proc Natl Acad Sci 99(1):280–285
Feschotte C, Gilbert C, Schaack S, Pace JK, Brindley PJ (2010) A role for host–parasite interactions in the horizontal transfer of transposons across phyla. Nature 464(7293):1347–1350
Fortune PM, Roulin A, Panaud O (2008) Horizontal transfer of transposable elements in plants. Commun Integr Biol 1(1):74–77
Fournier PE, Moliner C, Raoult D (2009) Evidence of horizontal gene transfer between amoeba and bacteria. Clin Microbiol Infect 15:178–180
Franck AR, Cochrane BJ, Garey JR (2013) Phylogeny, biogeography, and infrageneric classification of Harrisia (Cactaceae). Syst Bot 38(1):210–223
Freist W, Logan DT, Gauss DH (1996) Glycyl-tRNA synthetase. Biol Chem Hoppe Seyler 377(6):343–356
Gao C, Ren X, Mason AS (2014) Horizontal gene transfer in plants. Funct Integr Genomics 14(1):23–29
Garcia-Vallve S, Romeu A, Palau J (2000) Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol Biol Evol 17(3):352–361
Giulotto E, Nergadze SG, Lupotto M, Pellanda P, Santagostino M, Vitelli V (2010) Mitochondrial DNA insertions in the nuclear horse genome. Anim Genet 41:176–185
Gogarten JP, Doolittle WF, Lawrence JG (2002) Prokaryotic evolution in light of gene transfer. Mol Biol Evol 19(12):2226–2238
Goldenfeld N, Woese C (2007) Biology’s next revolution. Nature 445(7126):369
Goremykin VV, Salamini F, Velasco R, Viola R (2008) Mitochondrial DNA of Vitis vinifera and the issue of rampant horizontal gene transfer. Mol Biol Evol 26(1):99–110
Goremykin VV, Lockhart PJ, Viola R (2012) The mitochondrial genome of Malus domestica and the import driven hypothesis of mitochondrial genome expansion in seed plants. Plant J 71(4):615–626
Gribaldo S, Emiliani G, Fondi M, Fani R, Gribaldo S (2009) A horizontal gene transfer at the origin of phenylpropanoid metabolism: a key adaptation of plants to land. Biol Direct 4(1):7
Guljamow A, Jenke-Kodama H, Saumweber H (2007) Horizontal gene transfer of two cytoskeletal elements from a eukaryote to a cyanobacterium. Curr Biol 17(17):R757–R759
Hall C, Brachat S, Dietrich FS (2005) Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae. Eukaryot Cell 4(6):1102–1115
Hayes R, Kudla J, Schuster G, Gabay L, Maliga P, Gruissem W (1996) Chloroplast mRNA 3′-end processing by a high molecular weight protein complex is regulated by nuclear encoded RNA binding proteins. EMBO J 15(5):1132–1141
Hotopp JCD (2011) Horizontal gene transfer between bacteria and animals. Trends Genet 27(4):157–163
Hotopp JCD, Clark ME, Oliveira DC (2007) Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317(5845):1753–1756
Huang J (2013) Horizontal gene transfer in eukaryotes: the weak link model. BioEssays 35(10):868–875
Huang J, Gogarten JP (2006) Ancient horizontal gene transfer can benefit phylogenetic reconstruction. Trends Genet 22(7):361–366
Huang J, Gogarten JP (2008) Concerted gene recruitment in early plant evolution. Genome Biol 9(7):R109
Intrieri MC, Buiatti M (2001) The horizontal transfer of Agrobacterium rhizogenes genes and the evolution of the genus Nicotiana. Mol Phylogenet Evol 20(1):100–110
Kazazian HH (2004) Mobile elements: drivers of genome evolution. Science 303(5664):1626–1632
Keeling PJ, Palmer JD (2001) Lateral transfer at the gene and subgenic levels in the evolution of eukaryotic enolase. Proc Natl Acad Sci 98(19):10745–10750
Kidwell MG, Lisch DR (2001) Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution 55(1):1–24
Klasson L, Kambris Z, Cook PE et al (2009) Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti. BMC Genomics 10(1):33
Kondo N, Nikoh N, Ijichi N (2002) Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect. Proc Natl Acad Sci 99(22):14280–14285
Koonin EV (2009) Darwinian evolution in the light of genomics. Nucleic Acids Res 37:1011–1034
Koulintchenko M, Konstantinov Y, Dietrich A (2003) Plant mitochondria actively import DNA via the permeability transition pore complex. EMBO J 22(6):1245–1254
Kusano T, Berberich T, Tateda C, Takahashi Y (2008) Polyamines: essential factors for growth and survival. Planta (Berl) 228(3):367–381
Kyndt T, Quispe D, Zhai H, Jarret R, Ghislain M, Liu Q, Gheysen G, Kreuze JF (2015) The genome of cultivated sweet potato contains Agrobacterium T-DNAs with expressed genes: an example of a naturally transgenic food crop. Proc Natl Acad Sci 112(18):5844–5849
Lacroix B, Citovsky V (2016) Transfer of DNA from bacteria to eukaryotes. MBio 7(4):00863–00816
Lacroix B, Citovsky V (2018) Beyond Agrobacterium-mediated transformation: horizontal gene transfer from bacteria to eukaryotes. Curr Top Microbiol Immunol 418:443–462
Laten HM, Havecker ER, Farmer LM (2003) SIRE1, an endogenous retrovirus family from Glycine max, is highly homogeneous and evolutionarily young. Mol Biol Evol 20(8):1222–1230
Lerat E, Daubin V, Ochman H (2005) Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3(5):e130
Liang D, White RG, Waterhouse PM (2012) Gene silencing in Arabidopsis spreads from the root to the shoot, through a gating barrier, by template-dependent, nonvascular, cell–cell movement. Plant Physiol 159(3):984–1000
Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, Fan H, Li D, Dong L, Tao Y, Gao C, Wu H, Li Y, Cui Y, Guo X, Zheng S, Wang B, Yu K, Liang Q, Yang W, Lou X, Chen J, Feng M, Jian J, Zhang X, Luo G, Jiang Y, Liu J, Wang Z, Sha Y, Zhang B, Wu H, Tang D, Shen Q, Xue P, Zou S, Wang X, Liu X, Wang F, Yang Y, An X, Dong Z, Zhang K, Zhang X, Luo MC, Dvorak J, Tong Y, Wang J, Yang H, Li Z, Wang D, Zhang A, Wang J (2013) Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496(7443):87
Liu H, Fu Y, Jiang D (2010) Wide spread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes. J Virol 84(22):11876–11887
Liu X, Liu Y, Huang P, Ma Y, Qing Z, Tang Q, Cao H, Cheng P, Zheng Y, Yuan Z, Zhou Y, Liu J, Tang Z, Zhuo Y, Zhang Y, Yu L, Huang J, Yang P, Peng Q, Zhang J, Jiang W, Zhang Z, Lin K, Ro DK, Chen X, Xiong X, Shang Y, Huang S, Zeng J (2017) The genome of medicinal plant Macleaya cordata provides new insights into benzylisoquinoline alkaloids metabolism. Mol Plant 10(7):975–989
Lucas WJ, Ham BK, Kim JY (2009) Plasmodesmata: bridging the gap between neighboring plant cells. Trends Cell Biol 19(10):495–503
Marienfeld J, Unseld M, Brennicke A (1999) The mitochondrial genome of Arabidopsis is composed of both native and immigrant information. Trends Plant Sci 4(12):495–502
Martin W, Brinkmann H, Savonna C, Cerff R (1993) Evidence for a chimeric nature of nuclear genomes: eubacterial origin of eukaryotic glyceraldehyde-3-phosphate dehydrogenase genes. Proc Natl Acad Sci 90(18):8692–8696
Matveeva TV, Lutova LA (2014) Horizontal gene transfer from Agrobacterium to plants. Front Plant Sci 5:326
Matveeva TV, Bogomaz DI, Pavlova OA, Nester EW, Lutova LA (2012) Horizontal gene transfer from genus Agrobacterium to the plant Linaria in nature. Mol Plant Microbe Interact 25(12):1542–1551
Maumus F, Epert A, Nogué F, Blanc G (2014) Plant genomes enclose footprints of past infections by giant virus relatives. Nat Commun 5:5268
Maurel C, Barbier-Brygoo H, Spena A, Spena A, Tempé J, Guern J (1991) Single rol genes from the Agrobacterium rhizogenes TL-DNA alter some of the cellular responses to auxin in Nicotiana tabacum. Plant Physiol 97(1):212–216
Mayer WE, Schuster LN, Bartelmes G (2011) Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. BMC Evol Biol 11(1):13
McGinty SE, Rankin DJ, Brown SP (2011) Horizontal gene transfer and the evolution of bacterial cooperation. Evol Int J Org Evol 65(1):21–32
Mitsui T, Yamaguchi J, Akazawa T (1996) Physicochemical and serological characterization of rice [α]-amylase isoforms and identification of their corresponding genes. Plant Physiol 110(4):1395–1404
Mohr KI, Tebbe CC (2007) Field study results on the probability and risk of a horizontal gene transfer from transgenic herbicide-resistant oilseed rape pollen to gut bacteria of bees. Appl Microbiol Biotechnol 75(3):573–582
Moran NA, Jarvik T (2010) Lateral transfer of genes from fungi underlies carotenoid production in aphids. Science 328(5978):624–627
Mower JP, Stefanovic S, Young GJ, Palmer JD (2004) Plant genetics: gene transfer from parasitic to host plants. Nature 432(7014):165–166
Mower JP, Stefanović S, Hao W (2010) Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. BMC Biol 8(1):150
Nedelcu AM, Miles IH, Fagir AM (2008) Adaptive eukaryote to eukaryote lateral gene transfer: stress related genes of algal origin in the closest unicellular relatives of animals. J Evol Biol 21(6):1852–1860
Neelapu NRR, Titash D, Surekha C (2018) Quorum sensing and its role in Agrobacterium mediated gene transfer. In: Veera Bramhachari P (ed) Implication of quorum sensing system in biofilm formation and virulence. Springer Nature, Switzerland, pp 259–275
Nerva L, Varese GC, Falk BW, Turina M (2017) Mycoviruses of an endophytic fungus can replicate in plant cells: evolutionary implications. Sci Rep 7(1908):1–11
Neuteboom LW, Veth-Tello LM, Clijdesdale OR, Hooykaas PJJ, Zaal EJ, der v (1999) A novel subtilisin-like protease gene from Arabidopsis thaliana is expressed at sites of lateral root emergence. DNA Res 6(1):13–19
Ni T, Yue J, Sun G (2012) Ancient gene transfer from algae to animals: mechanisms and evolutionary significance. BMC Evol Biol 12(1):83
Notsu Y, Masood S, Nishikawa T (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Gen Genomics 268(4):434–445
Novick P, Smith J, Ray D, Boissinot S (2010) Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene (Amst) 449(1):85–94
O’Malley MA, Boucher Y (2005) Paradigm change in evolutionary microbiology. Stud Hist Philos Biol Biomed Sci 36(1):183–208
Ogata H, Monier A, Claverie JM (2007) Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses. BMC Genomics 8(1):456
Panaud O (2016) Horizontal transfers of transposable elements in eukaryotes: the flying genes. C R Biol 339(7-8):296–299
Park JM, Manen JF, Schneeweiss GM (2007) Horizontal gene transfer of a plastid gene in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae). Mol Phylogenet Evol 43(3):974–985
Peccoud J, Loiseau V, Cordaux R (2017) Massive horizontal transfer of transposable elements in insects. Proc Natl Acad Sci 114(18):4721–4726
Peng M, Gao Y, Chen W, Wang W, Shen S, Shi J, Wang C, Zhang Y, Zou L, Wang S, Wan J, Liu X, Gong L, Luo J (2016) Evolutionarily distinct BAHD N-acyltransferases are responsible for natural variation of aromatic amine conjugates in rice. Plant Cell 28:1528–1554
Piskurek O, Okada N (2007) Poxviruses as possible vectors for horizontal transfer of retroposons from reptiles to mammals. Proc Natl Acad Sci 104(29):12046–12051
Pontiroli A, Rizzi A, Simonet P, Daffonchio D, Vogel TM, Monier JM (2009) Visual evidence of horizontal gene transfer between plants and bacteria in the phytosphere of transplastomic tobacco. Appl Environ Microbiol 75(10):3314–3322
Price DC, Chan CX, Yoon HS (2012) Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science 335(6070):843–847
Quispe-Huamanquispe DG, Gheysen G, Kreuze JF (2017) Horizontal gene transfer contributes to plant evolution: the case of Agrobacterium T-DNAs. Front Plant Sci 8:2015
Richards TA, Hirt RP, Williams BA, Embley TM (2003) Horizontal gene transfer and the evolution of parasitic protozoa. Protist 154(1):17
Richards TA, Dacks JB, Campbell SA (2006) Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements. Eukaryot Cell 5(9):1517–1531
Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, Talbot NJ (2009) Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. Plant Cell 21(7):1897–1911
Richardson AO, Palmer JD (2006) Horizontal gene transfer in plants. J Exp Bot 58(1):1–9
Rolland T, Neuvéglise C, Sacerdot C, Dujon B (2009) Insertion of horizontally transferred genes within conserved syntenic regions of yeast genomes. PLoS One 4(8):6515
Roney JK, Khatibi PA, Westwood JH (2007) Cross-species translocation of mRNA from host plants into the parasitic plant dodder. Plant Physiol 143(2):1037–1043
Roossinck MJ (2019) Evolutionary and ecological links between plant and fungal viruses. New Phytol 221(1):86–92
Rosewich UL, Kistler HC (2000) Role of horizontal gene transfer in the evolution of fungi. Annu Rev Phytopathol 38(1):325–363
Roulin A, Piegu B, Wing RA, Panaud O (2008) Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza. Plant J 53(6):950–959
Roulin A, Piegu B, Fortune PM, Sabot F, D'Hont A, Manicacci D, Panaud O (2009) Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae. BMC Evol Biol 9(1):58
Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blöcker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdomènech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Quétier F, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D’Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, Löhnert TH, Nordsiek G, Reichelt J, Scharfe M, Schön O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenwälder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, Flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S, European Union Chromosome 3 Arabidopsis Sequencing Consortium, Institute for Genomic Research, Kazusa DNA Research Institute (2000) Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Nature 408(6814):820–822
Schaack S, Gilbert C, Feschotte C (2010) Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol Evol 25(9):537–546
Schaller A, Stintzi A, Graff L (2012) Subtilases–versatile tools for protein turnover, plant development, and interactions with the environment. Physiol Plant 145(1):52–66
Schlüter K, Fütterer J, Potrykus I (1995) Horizontal gene transfer from a transgenic potato line to a bacterial pathogen (Erwinia chrysanthemi) occurs—if at all—at an extremely low frequency. Nat Biotechnol 13(10):1094
Schmidt SM, Houterman PM, Schreiver I, Ma L, Amyotte S, Chellappan B, Boeren S, Takken FL, Rep M (2013) MITEs in the promoters of effector genes allow prediction of novel virulence genes in Fusarium oxysporum. BMC Genomics 14(1):119
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK (2009) The B73 maize genome: complexity, diversity, and dynamics. Science 326(5956):1112–1115
Scholl EH, Bird DM (2011) Computational and phylogenetic validation of nematode horizontal gene transfer. BMC Biol 9(1):9
Schönknecht G, Weber AP, Lercher MJ (2014) Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution. BioEssays 36(1):9–20
Screen SE, Leger RJS (2000) Cloning, expression, and substrate specificity of a fungal chymotrypsin: evidence for lateral gene transfer from an Actinomycete bacterium. J Biol Chem 275(9):6689–6694
Seehausen O (2004) Hybridization and adaptative radiation. Trends Ecol Evol 1:198–207
Serrato-Capuchina A, Matute DR (2018) The role of transposable elements in speciation. Genes (Basel) 9(5):254
Shimojima M, Ohta H, Iwamatsu A, Masuda T, Shioi Y, Takamiya K (1997) Cloning of the gene for monogalactosyldiacylglycerol synthase and its evolutionary origin. Proc Natl Acad Sci 94(1):333–337
Silva JC, Loreto EL, Clark JB (2004) Factors that affect the horizontal transfer of transposable elements. Curr Issues Mol Biol 6:57–71
Slot JC, Rokas A (2011) Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr Biol 21(2):134–139
Sormacheva I, Smyshlyaev G, Mayorov V, Blinov A, Novikov A, Novikova O (2012) Vertical evolution and horizontal transfer of CR1 non-LTR retrotransposons and Tc1/mariner DNA transposons in Lepidoptera species. Mol Biol Evol 29(12):3685–3702
Stegemann S, Bock R (2009) Exchange of genetic material between cells in plant tissue grafts. Science 324(5927):649–651
Stegemann S, Keuthe M, Greiner S, Bock R (2012) Horizontal transfer of chloroplast genomes between plant species. Proc Natl Acad Sci 109(7):2434–2438
Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, Stein JC, Glaubitz JC, Lu F, Yu G, Liang C, Fengler K, Li B, Rafalski A, Schnable PS, Ware DH, Buckler ES, Lai J (2018) Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. Nat Genet 50(9):1289
Suzuki K, Yamashita I, Tanaka N (2002) Tobacco plants were transformed by Agrobacterium rhizogenes infection during their evolution. Plant J 32(5):775–787
Tanaka H, Onouchi H, Kondo M, Hara-Nishimura I, Nishimura M, Machida C, Machida Y (2001) A subtilisin-like serine protease is required for epidermal surface formation in Arabidopsis embryos and juvenile plants. Development (Camb) 128(23):4681–4689
Thyssen G, Svab Z, Maliga P (2012) Cell-to-cell movement of plastids in plants. Proc Natl Acad Sci 109(7):2439–2443
Timmis JN, Ayliffe MA, Huang CY, Martin W (2004) Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat Rev Genet 5(2):123
Trobridge GD (2009) Foamy virus vectors for gene transfer. Expert Opin Biol Ther 9(11):1427–1436
Turano FJ, Weisemann JM, Matthews BF (1992) Identification and expression of a cDNA clone encoding aspartate aminotransferase in carrot. Plant Physiol 100(1):374–381
Veronico P, Jones J, Di Vito M, De Giorgi C (2001) Horizontal transfer of a bacterial gene involved in polyglutamate biosynthesis to the plant parasitic nematode Meloidogyne artiellia. FEBS Lett 508(3):470–474
Wallau GL, Ortiz MF, Loreto ELS (2012) Horizontal transposon transfer in Eukarya: detection, bias, and perspectives. Genome Biol Evol 4(8):801–811
Wang D, Lloyd AH, Timmis JN (2012) Environmental stress increases the entry of cytoplasmic organellar DNA into the nucleus in plants. Proc Natl Acad Sci 109(7):2444–2448
Watkins RF, Gray MW (2006) The frequency of eubacterium-to-eukaryote lateral gene transfers shows significant cross-taxa variation within amoebozoa. J Mol Evol 63(6):801–814
Watts RA, Hunt PW, Hvitved AN, Hargrove MS, Peacock WJ, Dennis ES (2001) A hemoglobin from plants homologous to truncated hemoglobins of microorganisms. Proc Natl Acad Sci 98(18):10119–10124
Werner AK, Sparkes IA, Romeis T, Witte CP (2008) Identification, biochemical characterization, and subcellular localization of allantoate amidohydrolases from Arabidopsis and soybean. Plant Physiol 146(2):418–430
Wiszniewski AA, Zhou W, Smith SM, Bussell JD (2009) Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins. Plant Mol Biol 69(5):503
Wolf YI, Koonin EV (2001) Origin of an animal mitochondrial DNA polymerase subunit via lineage-specific acquisition of a glycyl-tRNA synthetase from bacteria of the Thermus–Deinococcus group. Trends Genet 17(8):431–433
Won H, Renner SS (2003) Horizontal gene transfer from flowering plants to gnetum. Proc Natl Acad Sci 100(19):10824–10829
Woodson JD, Chory J (2008) Coordination of gene expression between organellar and nuclear genomes. Nat Rev Genet 9(5):383
Yoshida S, Maruyama S, Nozaki H, Shirasu K (2010) Horizontal gene transfer by the parasitic plant Striga hermonthica. Science 328(5982):1128–1128
Yue J, Hu X, Sun H, Yang Y, Huang J (2012) Widespread impact of horizontal gene transfer on plant colonization of land. Nat Commun 3:1152
Yue J, Hu X, Huang J (2014) Origin of plant auxin biosynthesis. Trends Plant Sci 19(12):764–770
Zambryski P, Crawford K (2000) Plasmodesmata: gatekeepers for cell-to-cell transport of developmental signals in plants. Annu Rev Cell Dev Biol 16(1):393–421
Zardoya R, Ding X, Kitagawa Y, Chrispeels MJ (2002) Origin of plant glycerol transporters by horizontal gene transfer and functional recruitment. Proc Natl Acad Sci 99(23):14893–14896
Zhao C, Johnson BJ, Kositsup B, Beers EP (2000) Exploiting secondary growth in Arabidopsis. Construction of xylem and bark cDNA libraries and cloning of three xylem endopeptidases. Plant Physiol 123(3):1185–1196
Zhu B, Lou MM, Xie GL, Zhang GQ, Zhou XP, Li B, Jin GL (2011) Horizontal gene transfer in silkworm, Bombyx mori. BMC Genomics 12(1):248
Acknowledgments
C.S., M.R.M., T.D., and N.N.R. are grateful to GITAM (Deemed to be University) for providing necessary facilities to carry out the research work and for extending constant support.
Authors’ Contribution
C.S., M.R.M., T.D., and N.N.R. initiated the review, participated in writing, and revised the manuscript.
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The authors declare that there is no potential conflict of interest.
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Neelapu, N.R.R., Mishra, M.R., Dutta, T., Challa, S. (2019). Role of Horizontal Gene Transfer in Evolution of the Plant Genome. In: Villa, T., Viñas, M. (eds) Horizontal Gene Transfer. Springer, Cham. https://doi.org/10.1007/978-3-030-21862-1_12
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