Abstract
Demands for clean and sustainable processes and products that are environmentally friendly are challenging biotechnologists to develop new strategies to produce fuels and chemicals. As the petroleum demands rise together with the concern of climatic and environmental changes, there is an increasing interest for renewable energy. Sugars present in the lignocellulosic biomass can be used as raw material in biotechnological processes employing yeasts as catalysts. Several known yeasts such as Saccharomyces cerevisiae assimilate glucose but lack the efficiency to consume xylose. Due to industrial interest, there has been an increasing effort to discover and construct new xylose-assimilating yeast strains. In this sense, due to the diversity and metabolic potential, several non-conventional yeasts species were isolated, identified, and physiologically and genetically characterized in the last years. The current review sought to summarize the main characteristics as well as the biotechnological applications of non-conventional yeasts for xylose utilization. First, it will present and discuss the data about non-conventional yeasts that naturally and efficiently assimilate xylose as Scheffersomyces, Meyerozyma, Candida, Spathaspora, and Kluyveromyces. Then the yeasts Komagataella, Yarrowia, and Ogataea that do not assimilate xylose or poorly assimilate xylose justifying genetic manipulation to increase xylose utilization will also be presented. In each case, basic information about yeast taxonomy, morphology, and physiology will be presented, and the clearest biotechnological application will be introduced.
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References
Abbott DA, Zelle RM, Pronk JT, van Maris AJA (2009) Metabolic engineering of Saccharomyces cerevisiae for production of carboxylic acids: current status and challenges. FEMS Yeast Res 9:1123–1136. https://doi.org/10.1111/j.1567-1364.2009.00537.x
Abdulrachman D, Thongkred P, Kocharin K, Nakpathom M, Somboon B, Narumol N, Champreda V, Eurwilaichitr L, Suwanto A, Nimchua T, Chantasingh D (2017) Heterologous expression of Aspergillus aculeatus endo-polygalacturonase in Pichia pastoris by high cell density fermentation and its application in textile scouring. BMC Biotechnol 17. https://doi.org/10.1186/s12896-017-0334-9
Abghari A, Chen S (2014) Yarrowia lipolytica as an oleaginous cell factory platform for production of fatty acid-based biofuel and bioproducts. Front Energy Res 2. https://doi.org/10.3389/fenrg.2014.00021
Agbogbo FK, Coward-Kelly G (2008) Cellulosic ethanol production using the naturally occurring xylose-fermenting yeast, Pichia stipitis. Biotechnol Lett 30:1515–1524. https://doi.org/10.1007/s10529-008-9728-z
Ahmad M, Hirz M, Pichler H, Schwab H (2014) Protein expression in Pichia pastoris: recent achievements and perspectives for heterologous protein production. Appl Microbiol Biotechnol 98:5301–5317. https://doi.org/10.1007/s00253-014-5732-5
Akinterinwa O, Khankal R, Cirino PC (2008) Metabolic engineering for bioproduction of sugar alcohols. Curr Opin Biotechnol 19:461–467. https://doi.org/10.1016/j.copbio.2008.08.002
Almeida JRM, Runquist D, Sànchez Nogué V, Lidén G, Gorwa-Grauslund MF (2011) Stress-related challenges in pentose fermentation to ethanol by the yeast Saccharomyces cerevisiae. Biotechnol J 6:286–299. https://doi.org/10.1002/biot.201000301
Araujo FV, Hagler AN (2011) Kluyveromyces aestuarii, a potential environmental quality indicator yeast for mangroves in the State of Rio de Janeiro, Brazil. Braz J Microbiol 42:954–958
Araújo D, Freitas F, Sevrin C, Grandfils C, Reis MAM (2017) Co-production of chitin-glucan complex and xylitol by Komagataella pastoris using glucose and xylose mixtures as carbon source. Carbohydr Polym 166:24–30. https://doi.org/10.1016/j.carbpol.2017.02.088
Artifon W, Bonatto C, Bordin ER, Bazoti SF, Dervanoski A, Alves SL, Treichel H (2018) Bioethanol Production From Hydrolyzed Lignocellulosic After Detoxification Via Adsorption With Activated Carbon and Dried Air Stripping. Front Bioeng Biotechnol 6. https://doi.org/10.3389/fbioe.2018.00107
Bajwa PK, Phaenark C, Grant N, Zhang X, Paice M, Martin VJJ, Trevors JT, Lee H (2011) Ethanol production from selected lignocellulosic hydrolysates by genome shuffled strains of Scheffersomyces stipitis. Bioresour Technol 102:9965–9969. https://doi.org/10.1016/j.biortech.2011.08.027
Ballesteros I, Negro MJ, Oliva JM, Cabañas A, Manzanares P, Ballesteros M (2006) Ethanol production from steam-explosion pretreated wheat straw. In: McMillan JD, Adney WS, Mielenz JR, Klasson KT (eds) Twenty-seventh symposium on biotechnology for fuels and chemicals. Humana Press, Totowa, pp 496–508
Barbosa AC, Cadete RM, Gomes FCO, Lachance M-A, Rosa CA (2009) Candida materiae sp. nov., a yeast species isolated from rotting wood in the Atlantic Rain Forest. Int J Syst Evol Microbiol 59:2104–2106. https://doi.org/10.1099/ijs.0.009175-0
Beopoulos A, Cescut J, Haddouche R, Uribelarrea J-L, Molina-Jouve C, Nicaud J-M (2009) Yarrowia lipolytica as a model for bio-oil production. Prog Lipid Res 48:375–387. https://doi.org/10.1016/j.plipres.2009.08.005
Bier MCJ, Maranho LT, Azevedo JAM, Junios LS d S (2007) Crescimento e consumo de Xilose de Candida guilliermondii na fermentação submersa utilizando-se bagaço de cana-de-açúcar. Evidência 7:119–130
Blazeck J, Hill A, Liu L, Knight R, Miller J, Pan A, Otoupal P, Alper HS (2014) Harnessing Yarrowia lipolytica lipogenesis to create a platform for lipid and biofuel production. Nat Commun 5. https://doi.org/10.1038/ncomms4131
Bozell JJ, Petersen GR (2010) Technology development for the production of biobased products from biorefinery carbohydrates—the US Department of Energy’s “Top 10” revisited. Green Chem 12:539. https://doi.org/10.1039/b922014c
Bruinenberg PM, Bot PHM, Dijken JP, Scheffers WA (1983) The role of redox balances in the anaerobic fermentation of xylose by yeasts. Eur J Appl Microbiol Biotechnol 18:287–292. https://doi.org/10.1007/BF00500493
Butler G, Rasmussen MD, Lin MF, Santos MAS, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJP, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PWJ, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KAT, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MPH, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NAR, Lorenz MC, Birren BW, Kellis M, Cuomo CA (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459:657–662. https://doi.org/10.1038/nature08064
Cadete RM, Rosa CA (2018) The yeasts of the genus Spathaspora : potential candidates for second-generation biofuel production: Spathaspora yeasts as candidates for 2G bioethanol production. Yeast 35:191–199. https://doi.org/10.1002/yea.3279
Cadete RM, Santos RO, Melo MA, Mouro A, DL Gça, Stambuk BU, Gomes FCO, Lachance M-A, Rosa CA (2009) Spathaspora arborariae sp. nov., a d-xylose-fermenting yeast species isolated from rotting wood in Brazil. FEMS Yeast Res 9:1338–1342. https://doi.org/10.1111/j.1567-1364.2009.00582.x
Cadete RM, Melo MA, Dussán KJ, Rodrigues RCLB, Silva SS, Zilli JE, Vital MJS, Gomes FCO, Lachance M-A, Rosa CA (2012) Diversity and Physiological Characterization of D-Xylose-Fermenting Yeasts Isolated from the Brazilian Amazonian Forest. PLoS One 7:e43135. https://doi.org/10.1371/journal.pone.0043135
Cadete RM, Melo MA, Zilli JE, Vital MJS, Mouro A, Prompt AH, Gomes FCO, Stambuk BU, Lachance M-A, Rosa CA (2013) Spathaspora brasiliensis sp. nov., Spathaspora suhii sp. nov., Spathaspora roraimanensis sp. nov. and Spathaspora xylofermentans sp. nov., four novel d-xylose-fermenting yeast species from Brazilian Amazonian forest. Antonie Van Leeuwenhoek 103:421–431. https://doi.org/10.1007/s10482-012-9822-z
Cadete RM, de las Heras AM, Sandström AG, Ferreira C, Gírio F, Gorwa-Grauslund M-F, Rosa CA, Fonseca C (2016a) Exploring xylose metabolism in Spathaspora species: XYL1.2 from Spathaspora passalidarum as the key for efficient anaerobic xylose fermentation in metabolic engineered Saccharomyces cerevisiae. Biotechnol Biofuels 9. https://doi.org/10.1186/s13068-016-0570-6
Cadete RM, Melo-Cheab MA, Viana AL, Oliveira ES, Fonseca C, Rosa CA (2016b) The yeast Scheffersomyces amazonensis is an efficient xylitol producer. World J Microbiol Biotechnol 32. https://doi.org/10.1007/s11274-016-2166-5
Canilha L, Milagres AMF, Silva SS, Almeida e Silva JB, Felipe MGA, Roche GJM, Ferraz A, Carvalho W (2010) Sacarificação da Biomassa Lignocelulósica através de pré-hidrólise ácida seguida por hidrólise enzimática: uma estratégia de “desconstrução” da fibra vegetal. Revista Analytica 44
Cernak P, Estrela R, Poddar S, Skerker JM, Cheng Y-F, Carlson AK, Chen B, Glynn VM, Furlan M, Ryan OW, Donnelly MK, Arkin AP, Taylor JW, Cate JHD (2018) Engineering Kluyveromyces marxianus as a robust synthetic biology platform host. mBio 9. https://doi.org/10.1128/mBio.01410-18
Chakravorty M, Veiga LA, Bacila M, Horecker BL (1962) Pentose Metabolism in Candida. II. The diphosphopyridine nucleotide-specific polyol dehydrogenase of candida utilis. J Biol Chem 237:1014–1020
Chandel AK, Singh OV, Rao LV, Chandrasekhar G, Narasu ML (2011) Bioconversion of novel substrate Saccharum spontaneum, a weedy material, into ethanol by Pichia stipitis NCIM3498. Bioresour Technol 102:1709–1714. https://doi.org/10.1016/j.biortech.2010.08.016
Chen W-H, Pen B-L, Yu C-T, Hwang W-S (2011) Pretreatment efficiency and structural characterization of rice straw by an integrated process of dilute-acid and steam explosion for bioethanol production. Bioresour Technol 102:2916–2924. https://doi.org/10.1016/j.biortech.2010.11.052
Christopher L (2012) Adding value prior to pulping: bioproducts from hemicellulose. In: Okia DCA (ed) Global perspectives on sustainable forest management. InTech
Coda R, Rizzello CG, Di Cagno R, Trani A, Cardinali G, Gobbetti M (2013) Antifungal activity of Meyerozyma guilliermondii: Identification of active compounds synthesized during dough fermentation and their effect on long-term storage of wheat bread. Food Microbiol 33:243–251. https://doi.org/10.1016/j.fm.2012.09.023
Comitini F, Ciani M (2011) Kluyveromyces wickerhamii killer toxin: purification and activity towards Brettanomyces/Dekkera yeasts in grape must: Kwkt killer toxin purification. FEMS Microbiol Lett 316:77–82. https://doi.org/10.1111/j.1574-6968.2010.02194.x
Corte L, di Cagno R, Groenewald M, Roscini L, Colabella C, Gobbetti M, Cardinali G (2015) Phenotypic and molecular diversity of Meyerozyma guilliermondii strains isolated from food and other environmental niches, hints for an incipient speciation. Food Microbiol 48:206–215. https://doi.org/10.1016/j.fm.2014.12.014
Crous PW, Wingfield MJ, Burgess TI, Carnegie AJ, Hardy GESJ, Smith D, Summerell BA, Cano-Lira JF, Guarro J, Houbraken J, Lombard L, Martín MP, Sandoval-Denis M, Alexandrova AV, Barnes CW, Baseia IG, Bezerra JDP, Guarnaccia V, May TW, Hernández-Restrepo M, Stchigel AM, Miller AN, Ordoñez ME, Abreu VP, Accioly T, Agnello C, Agustin Colmán A, Albuquerque CC, Alfredo DS, Alvarado P, Araújo-Magalhães GR, Arauzo S, Atkinson T, Barili A, Barreto RW, Bezerra JL, Cabral TS, Camello Rodríguez F, Cruz RHSF, Daniëls PP, da Silva BDB, de Almeida DAC, de Carvalho Júnior AA, Decock CA, Delgat L, Denman S, Dimitrov RA, Edwards J, Fedosova AG, Ferreira RJ, Firmino AL, Flores JA, García D, Gené J, Giraldo A, Góis JS, Gomes AAM, Gonçalves CM, Gouliamova DE, Groenewald M, Guéorguiev BV, Guevara-Suarez M, Gusmão LFP, Hosaka K, Hubka V, Huhndorf SM, Jadan M, Jurjević Ž, Kraak B, Kučera V, Kumar TKA, Kušan I, Lacerda SR, Lamlertthon S, Lisboa WS, Loizides M, Luangsa-ard JJ, Lysková P, Mac Cormack WP, Macedo DM, Machado AR, Malysheva EF, Marinho P, Matočec N, Meijer M, Mešić A, Mongkolsamrit S, Moreira KA, Morozova OV, Nair KU, Nakamura N, Noisripoom W, Olariaga I, Oliveira RJV, Paiva LM, Pawar P, Pereira OL, Peterson SW, Prieto M, Rodríguez-Andrade E, Rojo De Blas C, Roy M, Santos ES, Sharma R, Silva GA, Souza-Motta CM, Takeuchi-Kaneko Y, Tanaka C, Thakur A, Smith MT, Tkalčec Z, Valenzuela-Lopez N, van der Kleij P, Verbeken A, Viana MG, Wang XW, Groenewald JZ (2017) Fungal Planet description sheets: 625–715. Persoonia Mol Phylog Evolut Fungi. https://doi.org/10.3767/persoonia.2017.39.11
da Cunha-Pereira F, Hickert LR, Rech R, Dillon AP, Záchia Ayub MA (2017) Fermentation of hexoses and pentoses from hydrolyzed soybean Hull into ethanol and xylitol BY Candida guilliermondii BL 13. Braz J Chem Eng 34:927–936
Dantán-González E, Quiroz-Castañeda RE, Cobaxin-Cárdenas M, Valle-Hernández J, Gama-Martínez Y, Tinoco-Valencia JR, Serrano-Carreón L, Ortiz-Hernández L (2015) Impact of Meyerozyma guilliermondii isolated from chickens against Eimeria sp. protozoan, an in vitro analysis. BMC Vet Res 11:1–11. https://doi.org/10.1186/s12917-015-0589-0
de Albuquerque TL, da Silva IJ, de Macedo GR, Rocha MVP (2014) Biotechnological production of xylitol from lignocellulosic wastes: a review. Process Biochem 49:1779–1789. https://doi.org/10.1016/j.procbio.2014.07.010
de Lima PBA, Mulder KCL, Melo NTM, Carvalho LS, Menino GS, Mulinari E, de Castro VH, dos Reis TF, Goldman GH, Magalhães BS, Parachin NS (2016) Novel homologous lactate transporter improves l-lactic acid production from glycerol in recombinant strains of Pichia pastoris. Microb Cell Factories 15. https://doi.org/10.1186/s12934-016-0557-9
De Marco L, Epis S, Capone A, Martin E, Bozic J, Crotti E, Ricci I, Sassera D 2018a The genomes of four Meyerozyma caribbica isolates and novel insights into the Meyerozyma guilliermondii species complex. G3 (Bethesda) 8(3):755–759. https://doi.org/10.1534/g3.117.300316
De Marco L, Epis S, Capone A, Martin E, Bozic J, Crotti E, Ricci I, Sassera D (2018b) The genomes of four Meyerozyma caribbica isolates and novel insights into the Meyerozyma guilliermondii Species Complex. G3 (Bethesda) 8(3):755–759. https://doi.org/10.1534/g3.117.300316
De Schutter K, Lin Y-C, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouzé P, Van de Peer Y, Callewaert N (2009) Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol 27:561–566. https://doi.org/10.1038/nbt.1544
de Souza G, Luana TCNV, Samila RPN, Maxwel AA (2017) Efficient production of second generation ethanol and xylitol by yeasts from Amazonian beetles (Coleoptera) and their galleries. Afr J Microbiol Res 11:814–824. https://doi.org/10.5897/AJMR2017.8522
Dias O, Gombert AK, Ferreira EC, Rocha I (2012) Genome-wide metabolic (re-) annotation of Kluyveromyces lactis. BMC Genomics 13:517. https://doi.org/10.1186/1471-2164-13-517
du Preez JC, van der Walt JP (1983) Fermentation of D-xylose to ethanol by a strain ofCandida shehatae. Biotechnol Lett 5:357–362. https://doi.org/10.1007/BF01141138
Duan H, Wang H, Ma B, Jiang P, Tu P, Ni Z, Li X, Li M, Ma X, Wang B, Wu R, Li M (2015) Codon optimization and expression of irisin in Pichia pastoris GS115. Int J Biol Macromol 79:21–26. https://doi.org/10.1016/j.ijbiomac.2015.04.030
Dujon B, Sherman D, Fischer G, Durrens P, Casaregola S, Lafontaine I, de Montigny J, Marck C, Neuvéglise C, Talla E, Goffard N, Frangeul L, Aigle M, Anthouard V, Babour A, Barbe V, Barnay S, Blanchin S, Beckerich J-M, Beyne E, Bleykasten C, Boisramé A, Boyer J, Cattolico L, Confanioleri F, de Daruvar A, Despons L, Fabre E, Fairhead C, Ferry-Dumazet H, Groppi A, Hantraye F, Hennequin C, Jauniaux N, Joyet P, Kachouri R, Kerrest A, Koszul R, Lemaire M, Lesur I, Ma L, Muller H, Nicaud J-M, Nikolski M, Oztas S, Ozier-Kalogeropoulos O, Pellenz S, Potier S, Richard G-F, Straub M-L, Suleau A, Swennen D, Tekaia F, Wésolowski-Louvel M, Westhof E, Wirth B, Zeniou-Meyer M, Zivanovic I, Bolotin-Fukuhara M, Thierry A, Bouchier C, Caudron B, Scarpelli C, Gaillardin C, Weissenbach J, Wincker P, Souciet J-L (2004) Genome evolution in yeasts. Nature 430:35–44. https://doi.org/10.1038/nature02579
Elshahed MS (2010) Microbiological aspects of biofuel production: Current status and future directions. J Adv Res 1:103–111. https://doi.org/10.1016/j.jare.2010.03.001
Faria NT, Santos MV, Fernandes P, Fonseca LL, Fonseca C, Ferreira FC (2014) Production of glycolipid biosurfactants, mannosylerythritol lipids, from pentoses and d-glucose/d-xylose mixtures by Pseudozyma yeast strains. Process Biochem 49:1790–1799. https://doi.org/10.1016/j.procbio.2014.08.004
Ferreira AD, Mussatto SI, Cadete RM, Rosa CA, Silva SS (2011) Ethanol production by a new pentose-fermenting yeast strain, Scheffersomyces stipitis UFMG-IMH 43.2, isolated from the Brazilian forest. Yeast 28:547–554. https://doi.org/10.1002/yea.1858
Fonseca GG, Heinzle E, Wittmann C, Gombert AK (2008) The yeast Kluyveromyces marxianus and its biotechnological potential. Appl Microbiol Biotechnol 79:339–354. https://doi.org/10.1007/s00253-008-1458-6
Franco Marcelino PR, da Silva VL, Rodrigues Philippini R, Von Zuben CJ, Contiero J, dos Santos JC, da Silva SS (2017) Biosurfactants produced by Scheffersomyces stipitis cultured in sugarcane bagasse hydrolysate as new green larvicides for the control of Aedes aegypti, a vector of neglected tropical diseases. PLoS One 12:e0187125. https://doi.org/10.1371/journal.pone.0187125
Gallo R, Trapp A (2017) The chemical conversion of biomass-derived saccharides: an overview. J Braz Chem Soc. https://doi.org/10.21577/0103-5053.20170009
García-Cubero MT, González-Benito G, Indacoechea I, Coca M, Bolado S (2009) Effect of ozonolysis pretreatment on enzymatic digestibility of wheat and rye straw. Bioresour Technol 100:1608–1613. https://doi.org/10.1016/j.biortech.2008.09.012
Garrote G, Dominguez H, Parajo JC (2002) Autohydrolysis of corncob: study of non-isothermal operation for xylooligasaccharide production. J Food Eng 52(3):211–218
Gı́rio F, Amaro C, Azinheira H, Pelica F, Amaral-Collaço M (2000) Polyols production during single and mixed substrate fermentations in Debaryomyces hansenii. Bioresour Technol 71:245–251. https://doi.org/10.1016/S0960-8524(99)00078-4
Gonçalves FAG, Colen G, Takahashi JA (2014) Yarrowia lipolytica and its multiple applications in the biotechnological industry. Sci World J 2014:1–14. https://doi.org/10.1155/2014/476207
Groeneveld P, Stouthamer AH, Westerhoff HV (2009) Super life – how and why ‘cell selection’ leads to the fastest-growing eukaryote: Control of highest eukaryotic growth rate. FEBS J 276:254–270. https://doi.org/10.1111/j.1742-4658.2008.06778.x
Groenewald M, Smith MT (2013) The teleomorph state of Candida deformans Langeron & Guerra and description of Yarrowia yakushimensis comb. nov. Antonie Van Leeuwenhoek 103:1023–1028. https://doi.org/10.1007/s10482-013-9882-8
Guan D, Li Y, Shiroma R, Ike M, Tokuyasu K (2013) Sequential incubation of Candida shehatae and ethanol-tolerant yeast cells for efficient ethanol production from a mixture of glucose, xylose and cellobiose. Bioresour Technol 132:419–422. https://doi.org/10.1016/j.biortech.2012.12.040
Gunah P (2011) Optimization of xylose production from sugarcane bagasse using response surface methodology (RSM). University of Malayia Pahang, Bachelor
Harhangi HR, Akhmanova AS, Emmens R, van der Drift C, de Laat WTAM, van Dijken JP, Jetten MSM, Pronk JT, Op den Camp HJM (2003) Xylose metabolism in the anaerobic fungus Piromyces sp. strain E2 follows the bacterial pathway. Arch Microbiol 180:134–141. https://doi.org/10.1007/s00203-003-0565-0
Hernández-Pérez AF, de Arruda PV, Felipe M das G de A (2016) Sugarcane straw as a feedstock for xylitol production by Candida guilliermondii FTI 20037. Braz J Microbiol 47:489–496. https://doi.org/10.1016/j.bjm.2016.01.019
Hommel RK, Ahnert P (1999) Candida. In: Encyclopedia of food microbiology, 1st edn. Elsevier Ltd, London
Hou X (2012) Anaerobic xylose fermentation by Spathaspora passalidarum. Appl Microbiol Biotechnol 94:205–214. https://doi.org/10.1007/s00253-011-3694-4
Hou J, Qiu C, Shen Y, Li H, Bao X (2017) Engineering of Saccharomyces cerevisiae for the efficient co-utilization of glucose and xylose. FEMS Yeast Res 17. https://doi.org/10.1093/femsyr/fox034
Ilmen M, Koivuranta K, Ruohonen L, Suominen P, Penttila M (2007) Efficient production of L-lactic acid from xylose by Pichia stipitis. Appl Environ Microbiol 73:117–123. https://doi.org/10.1128/AEM.01311-06
Jeffries TW (1983) Utilization of xylose by bacteria, yeasts, and fungi. In: Pentoses and lignin. Springer, Berlin/Heidelberg, pp 1–32
Jeffries TW (2006) Engineering yeasts for xylose metabolism. Curr Opin Biotechnol 17:320–326. https://doi.org/10.1016/j.copbio.2006.05.008
Jeffries TW, Van Vleet JRH (2009) Pichia stipitis genomics, transcriptomics, and gene clusters. FEMS Yeast Res 9:793–807. https://doi.org/10.1111/j.1567-1364.2009.00525.x
Jeffries TW, Grigoriev IV, Grimwood J, Laplaza JM, Aerts A, Salamov A, Schmutz J, Lindquist E, Dehal P, Shapiro H, Jin Y-S, Passoth V, Richardson PM (2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Nat Biotechnol 25:319–326. https://doi.org/10.1038/nbt1290
Ji X, Ma H, Tian Z, Lyu G, Fang G, Chen J, Saeed HAM (2017) Production of xylose from diluted sulfuric acid hydrolysis of wheat straw. Bioresources 12:7084–7095
Johnsen U, Dambeck M, Zaiss H, Fuhrer T, Soppa J, Sauer U, Schönheit P (2009) d-xylose degradation pathway in the halophilic Archaeon Haloferax volcanii. J Biol Chem 284:27290–27303. https://doi.org/10.1074/jbc.M109.003814
Jørgensen H, Kristensen JB, Felby C (2007) Enzymatic conversion of lignocellulose into fermentable sugars: challenges and opportunities. Biofuels Bioprod Biorefin 1:119–134. https://doi.org/10.1002/bbb.4
Kim D (2018) Physico-chemical conversion of lignocellulose: inhibitor effects and detoxification strategies: a mini review. Molecules 23:309. https://doi.org/10.3390/molecules23020309
Kim D, Woo HM (2018) Deciphering bacterial xylose metabolism and metabolic engineering of industrial microorganisms for use as efficient microbial cell factories. Appl Microbiol Biotechnol 102:9471–9480. https://doi.org/10.1007/s00253-018-9353-2
Kim TH, Taylor F, Hicks KB (2008) Bioethanol production from barley hull using SAA (soaking in aqueous ammonia) pretreatment. Bioresour Technol 99:5694–5702. https://doi.org/10.1016/j.biortech.2007.10.055
Kim SR, Park Y-C, Jin Y-S, Seo J-H (2013) Strain engineering of Saccharomyces cerevisiae for enhanced xylose metabolism. Biotechnol Adv 31:851–861. https://doi.org/10.1016/j.biotechadv.2013.03.004
Kim D, Ximenes EA, Nichols NN, Cao G, Frazer SE, Ladisch MR (2016) Maleic acid treatment of biologically detoxified corn stover liquor. Bioresour Technol 216:437–445. https://doi.org/10.1016/j.biortech.2016.05.086
Kim D, Orrego D, Ximenes EA, Ladisch MR (2017) Cellulose conversion of corn pericarp without pretreatment. Bioresour Technol 245:511–517. https://doi.org/10.1016/j.biortech.2017.08.156
Kręgiel D, Pawlikowska E, Antolak H (2017) Non-conventional yeasts in fermentation processes: potentialities and limitations. In: Lucas C, Pais C (eds) Old yeasts – new questions. InTech
Kumar V, Krishania M, Preet Sandhu P, Ahluwalia V, Gnansounou E, Sangwan RS (2018) Efficient detoxification of corn cob hydrolysate with ion-exchange resins for enhanced xylitol production by Candida tropicalis MTCC 6192. Bioresour Technol 251:416–419. https://doi.org/10.1016/j.biortech.2017.11.039
Kuroda K, Kobayashi K, Kitagawa Y, Nakagawa T, Tsumura H, Komeda T, Shinmi D, Mori E, Motoki K, Fuju K, Sakai T, Nonaka K, Suzuki T, Ichikawa K, Chiba Y, Jigami Y (2008) Efficient antibody production upon suppression of O mannosylation in the yeast Ogataea minuta. Appl Environ Microbiol 74:446–453. https://doi.org/10.1128/AEM.02106-07
Kurtzman CP (2005) New species and a new combination in the Hyphopichia and Yarrowia yeast clades. Antonie Van Leeuwenhoek 88:121–130. https://doi.org/10.1007/s10482-005-2495-0
Kurtzman CP (2009) Biotechnological strains of Komagataella (Pichia) pastoris are Komagataella phaffii as determined from multigene sequence analysis. J Ind Microbiol Biotechnol 36:1435–1438. https://doi.org/10.1007/s10295-009-0638-4
Kurtzman CP (2011a) Yarrowia van der Walt & von Arx (1980). In: The yeasts. Elsevier, Amsterdam, pp 927–929
Kurtzman CP (ed) (2011b) The yeasts: a taxonomic study 5 Elsevier, Amsterdam
Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73:331
Kurtzman C, Robnett C (2003) Phylogenetic relationships among yeasts of the ? complex? determined from multigene sequence analyses. FEMS Yeast Res 3:417–432. https://doi.org/10.1016/S1567-1356(03)00012-6
Kurtzman CP, Suzuki M (2010) Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces. Mycoscience 51:2–14. https://doi.org/10.1007/S10267-009-0011-5
Kurtzman M, Suzuki M, Kurtzman CP, Clade C, Clade C, U CY-T, Ay MY-T, Ay CY-T, Ay CY-T, Ay CY-T, U DY-T (2010) Meyerozyma Kurtzman & M. Suzuki (2010). Elsevier BV, London
Kurylenko OO, Ruchala J, Hryniv OB, Abbas CA, Dmytruk KV, Sibirny AA (2014) Metabolic engineering and classical selectionof the methylotrophic thermotolerant yeast Hansenulapolymorpha for improvement of high-temperature xylose alcoholicfermentation. Microb Cell Factories 13:122. https://doi.org/10.1186/s12934-014-0122-3
Kwak S, Jin Y-S (2017) Production of fuels and chemicals from xylose by engineered Saccharomyces cerevisiae: a review and perspective. Microb Cell Factories 16. https://doi.org/10.1186/s12934-017-0694-9
Lachance M-A (2007) Current status of Kluyveromyces systematics. FEMS Yeast Res 7:642–645. https://doi.org/10.1111/j.1567-1364.2006.00197.x
Lachance M-A (2011) Kluyveromyces van der Walt (1971). In: The yeasts. Elsevier, Amsterdam, pp 471–481
Lane MM, Morrissey JP (2010) Kluyveromyces marxianus: A yeast emerging from its sister’s shadow. Fungal Biol Rev 24:17–26. https://doi.org/10.1016/j.fbr.2010.01.001
Ledesma-Amaro R, Lazar Z, Rakicka M, Guo Z, Fouchard F, Coq A-MC-L, Nicaud J-M (2016) Metabolic engineering of Yarrowia lipolytica to produce chemicals and fuels from xylose. Metab Eng 38:115–124. https://doi.org/10.1016/j.ymben.2016.07.001
Li H, Alper HS (2016) Enabling xylose utilization in Yarrowia lipolytica for lipid production. Biotechnol J 11:1230–1240. https://doi.org/10.1002/biot.201600210
Li C, Knierim B, Manisseri C, Arora R, Scheller HV, Auer M, Vogel KP, Simmons BA, Singh S (2010) Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification. Bioresour Technol 101:4900–4906. https://doi.org/10.1016/j.biortech.2009.10.066
Li P, Sun H, Chen Z, Li Y, Zhu T (2015) Construction of efficient xylose utilizing Pichia pastoris for industrial enzyme production. Microb Cell Factories 14. https://doi.org/10.1186/s12934-015-0206-8
Liu Y, Wu C, Wang J, Mo W, Yu M (2013) Codon optimization, expression, purification, and functional characterization of recombinant human IL-25 in Pichia pastoris. Appl Microbiol Biotechnol 97:10349–10358. https://doi.org/10.1007/s00253-013-5264-4
Liu H-H, Ji X-J, Huang H (2015) Biotechnological applications of Yarrowia lipolytica: Past, present and future. Biotechnol Adv 33:1522–1546. https://doi.org/10.1016/j.biotechadv.2015.07.010
Liu X-J, Cao W-N, Ren Y-C, Xu L-L, Yi Z-H, Liu Z, Hui F-L (2016) Taxonomy and physiological characterisation of Scheffersomyces titanus sp. nov., a new D-xylose-fermenting yeast species from China. Sci Rep 6. https://doi.org/10.1038/srep32181
Lobo FP, Goncalves DL, Alves SL, Gerber AL, de Vasconcelos ATR, Basso LC, Franco GR, Soares MA, Cadete RM, Rosa CA, Stambuk BU (2014a) Draft genome sequence of the D-xylose-fermenting yeast Spathaspora arborariae UFMG-HM19.1AT. Genome Announ 2. https://doi.org/10.1128/genomeA.01163-13
Lobo FP, Goncalves DL, Alves SL, Gerber AL, de Vasconcelos ATR, Basso LC, Franco GR, Soares MA, Cadete RM, Rosa CA, Stambuk BU (2014b) Draft genome sequence of the D-xylose-fermenting yeast Spathaspora arborariae UFMG-HM19.1AT. Genome Announ 2. https://doi.org/10.1128/genomeA.01163-13
Löbs A-K, Schwartz C, Wheeldon I (2017) Genome and metabolic engineering in non-conventional yeasts: Current advances and applications. Synthet Syst Biotechnol 2:198–207. https://doi.org/10.1016/j.synbio.2017.08.002
Long TM, Su Y-K, Headman J, Higbee A, Willis LB, Jeffries TW (2012) Cofermentation of glucose, xylose, and cellobiose by the beetle-associated yeast Spathaspora passalidarum. Appl Environ Microbiol 78:5492–5500. https://doi.org/10.1128/AEM.00374-12
Lopes MR, Morais CG, Kominek J, Cadete RM, Soares MA, Uetanabaro APT, Fonseca C, Lachance M-A, Hittinger CT, Rosa CA (2016) Genomic analysis and D-xylose fermentation of three novel Spathaspora species: Spathaspora girioi sp. nov., Spathaspora hagerdaliae f. a., sp. nov. and Spathaspora gorwiae f. a., sp. nov. FEMS Yeast Res 16:fow044. https://doi.org/10.1093/femsyr/fow044
Lopes DD, Cibulski SP, Mayer FQ, Siqueira FM, Rosa CA, Hector RE, Ayub MAZ (2017) Draft genome sequence of the d-xylose-fermenting yeast Spathaspora xylofermentans UFMG-HMD23.3. Genome Announ 5. https://doi.org/10.1128/genomeA.00815-17
Lopes MR, Batista TM, Franco GR, Ribeiro LR, Santos ARO, Furtado C, Moreira RG, Goes-Neto A, Vital MJS, Rosa LH, Lachance M-A, Rosa CA (2018) Scheffersomyces stambukii f.a., sp. nov., a d-xylose-fermenting species isolated from rotting wood. Int J Syst Evol Microbiol 68:2306–2312. https://doi.org/10.1099/ijsem.0.002834
Ma K, He M, You H, Pan L, Hu G, Cui Y, Maeda T (2017) Enhanced fuel ethanol production from rice straw hydrolysate by an inhibitor-tolerant mutant strain of Scheffersomyces stipitis. RSC Adv 7:31180–31188. https://doi.org/10.1039/C7RA04049K
Madhavan A, Tamalampudi S, Ushida K, Kanai D, Katahira S, Srivastava A, Fukuda H, Bisaria VS, Kondo A (2009) Xylose isomerase from polycentric fungus Orpinomyces: gene sequencing, cloning, and expression in Saccharomyces cerevisiae for bioconversion of xylose to ethanol. Appl Microbiol Biotechnol 82:1067–1078. https://doi.org/10.1007/s00253-008-1794-6
Mans R, Daran J-MG, Pronk JT (2018) Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production. Curr Opin Biotechnol 50:47–56. https://doi.org/10.1016/j.copbio.2017.10.011
Martín C, Klinke HB, Thomsen AB (2007) Wet oxidation as a pretreatment method for enhancing the enzymatic convertibility of sugarcane bagasse. Enzym Microb Technol 40:426–432. https://doi.org/10.1016/j.enzmictec.2006.07.015
Martini C, Tauk-Tornisielo SM, Codato CB, Bastos RG, Ceccato-Antonini SR (2016) A strain of Meyerozyma guilliermondii isolated from sugarcane juice is able to grow and ferment pentoses in synthetic and bagasse hydrolysate media. World J Microbiol Biotechnol 32. https://doi.org/10.1007/s11274-016-2036-1
Martins GM, Bocchini-Martins DA, Bezzerra-Bussoli C, Pagnocca FC, Boscolo M, Monteiro DA, da Silva R, Gomes E (2018) The isolation of pentose-assimilating yeasts and their xylose fermentation potential. Braz J Microbiol 49:162–168. https://doi.org/10.1016/j.bjm.2016.11.014
Mateo S, Puentes JG, Moya AJ, Sánchez S (2015) Ethanol and xylitol production by fermentation of acid hydrolysate from olive pruning with Candida tropicalis NBRC 0618. Bioresour Technol 190:1–6. https://doi.org/10.1016/j.biortech.2015.04.045
Mattanovich D, Graf A, Stadlmann J, Dragosits M, Redl A, Maurer M, Kleinheinz M, Sauer M, Altmann F, Gasser B (2009) Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris. Microb Cell Factories 8:29. https://doi.org/10.1186/1475-2859-8-29
Mellitzer A, Weis R, Glieder A, Flicker K (2012) Expression of lignocellulolytic enzymes in Pichia pastoris. Microb Cell Factories 11:61. https://doi.org/10.1186/1475-2859-11-61
Meyer SA, Anderson K, Brown RE, Smith MT, Yarrow D, Mitchell G, Ahearn DG (1975) Physiological and DNA characterization of Candida maltose, a hydrocarbon-utilizing yeast. Arch Microbiol 104:225–231
Morais CG, Batista TM, Kominek J, Borelli BM, Furtado C, Moreira RG, Franco GR, Rosa LH, Fonseca C, Hittinger CT, Lachance M-A, Rosa CA (2017) Spathaspora boniae sp. nov., a D-xylose-fermenting species in the Candida albicans/Lodderomyces clade. Int J Syst Evol Microbiol 67:3798–3805. https://doi.org/10.1099/ijsem.0.002186
Morales P, Gentina JC, Aroca G, Mussatto SI (2017) Development of an acetic acid tolerant Spathaspora passalidarum strain through evolutionary engineering with resistance to inhibitors compounds of autohydrolysate of Eucalyptus globulus. Ind Crop Prod 106:5–11. https://doi.org/10.1016/j.indcrop.2016.12.023
Moran G (2004) Comparative genomics using Candida albicans DNA microarrays reveals absence and divergence of virulence-associated genes in Candida dubliniensis. Microbiology 150:3363–3382. https://doi.org/10.1099/mic.0.27221-0
Morrissey JP, Etschmann MMW, Schrader J, de Billerbeck GM (2015) Cell factory applications of the yeast Kluyveromyces marxianus for the biotechnological production of natural flavour and fragrance molecules. Yeast 32:3–16
Mosier N (2005) Features of promising technologies for pretreatment of lignocellulosic biomass. Bioresour Technol 96:673–686. https://doi.org/10.1016/j.biortech.2004.06.025
Moysés D, Reis V, Almeida J, Moraes L, Torres F (2016) Xylose Fermentation by Saccharomyces cerevisiae: Challenges and Prospects. Int J Mol Sci 17:207. https://doi.org/10.3390/ijms17030207
Mukherjee V, Radecka D, Aerts G, Verstrepen KJ, Lievens B, Thevelein JM (2017) Phenotypic landscape of non-conventional yeast species for different stress tolerance traits desirable in bioethanol fermentation. Biotechnol Biofuels 10. https://doi.org/10.1186/s13068-017-0899-5
Nagy E (2015) Biodiversity of food spoilage Yarrowia group in different kinds of food. Dissertation, University of Budapest
Nagy E, Niss M, Dlauchy D, Arneborg N, Nielsen DS, Peter G (2013) Yarrowia divulgata f.a., sp. nov., a yeast species from animal-related and marine sources. Int J Syst Evol Microbiol 63:4818–4823. https://doi.org/10.1099/ijs.0.057208-0
Nagy E, Dlauchy D, Medeiros AO, Péter G, Rosa CA (2014) Yarrowia porcina sp. nov. and Yarrowia bubula f.a. sp. nov., two yeast species from meat and river sediment. Antonie Van Leeuwenhoek 105:697–707. https://doi.org/10.1007/s10482-014-0125-4
Najjar A, Robert S, Guérin C, Violet-Asther M, Carrière F (2011) Quantitative study of lipase secretion, extracellular lipolysis, and lipid storage in the yeast Yarrowia lipolytica grown in the presence of olive oil: analogies with lipolysis in humans. Appl Microbiol Biotechnol 89:1947–1962. https://doi.org/10.1007/s00253-010-2993-5
Nakanishi SC, Soares LB, Biazi LE, Nascimento VM, Costa AC, Rocha GJM, Ienczak JL (2017) Fermentation strategy for second generation ethanol production from sugarcane bagasse hydrolyzate by Spathaspora passalidarum and Scheffersomyces stipitis: Fermentation Strategy for Second Generation Ethanol Production. Biotechnol Bioeng 114:2211–2221. https://doi.org/10.1002/bit.26357
Nakase T, Komagata K (1971) Significance of DNA base composition in the classification of the yeast genus Candida. J Gen Appl Microbiol 17:259–179
Nguyen NH, Suh S-O, Marshall CJ, Blackwell M (2006) Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res 110:1232–1241. https://doi.org/10.1016/j.mycres.2006.07.002
Niehus X, Crutz-Le Coq A-M, Sandoval G, Nicaud J-M, Ledesma-Amaro R (2018) Engineering Yarrowia lipolytica to enhance lipid production from lignocellulosic materials. Biotechnol Biofuels 11. https://doi.org/10.1186/s13068-018-1010-6
Nygård Y, Toivari MH, Penttilä M, Ruohonen L, Wiebe MG (2011) Bioconversion of d-xylose to d-xylonate with Kluyveromyces lactis. Metab Eng 13:383–391. https://doi.org/10.1016/j.ymben.2011.04.001
Odds FC (2010) Molecular phylogenetics and epidemiology of Candida albicans. Future Microbiol 5:67–79. https://doi.org/10.2217/fmb.09.113
Okada N, Tanimura A, Hirakawa H, Takashima M, Ogawa J, Shima J (2017) Draft Genome Sequences of the Xylose-Fermenting Yeast Scheffersomyces shehatae NBRC 1983 T and a Thermotolerant Isolate of S. shehatae ATY839 (JCM 18690). Genome Announ 5. https://doi.org/10.1128/genomeA.00347-17
Palsson BO, Fathi-Afshar S, Rudd DF, Lightfoot EN (1981) Biomass as a Source of Chemical Feedstocks: An Economic Evaluation. Science 213:513–517. https://doi.org/10.1126/science.213.4507.513
Protchenko O, Philpott CC, Sibirny AA (2011) Insertion mutagenesis. doi:https://doi.org/10.1111/j.1567-1364.2011.00720.x
Puseenam A, Kocharin K, Tanapongpipat S, Eurwilaichitr L, Ingsriswang S, Roongsawang N (2018) A novel sucrose-based expression system for heterologous proteins expression in thermotolerant methylotrophic yeast Ogataea thermomethanolica. FEMS Microbiol Lett 365. https://doi.org/10.1093/femsle/fny238
Radecka D, Mukherjee V, Mateo RQ, Stojiljkovic M, Foulquié-Moreno MR, Thevelein JM (2015) Looking beyond Saccharomyces : the potential of non-conventional yeast species for desirable traits in bioethanol fermentation. FEMS Yeast Res 15:fov053. https://doi.org/10.1093/femsyr/fov053
Rebello S, Abraham A, Madhavan A, Sindhu R, Binod P, Babu AK, Aneesh EM, Pandey A (2018) Non-conventional Yeast cell factories for sustainable bioprocesses. FEMS Microbiol Lett. https://doi.org/10.1093/femsle/fny222
Ren Y, Chen L, Niu Q, Hui F (2014) Description of Scheffersomyces henanensis sp. nov., a new D-xylose-fermenting yeast species isolated from rotten wood. PLoS One 9:e92315. https://doi.org/10.1371/journal.pone.0092315
Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk H-P, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW (2016) Comparative genomics of biotechnologically important yeasts. Proc Natl Acad Sci 113:9882–9887. https://doi.org/10.1073/pnas.1603941113
Rodicio R, Heinisch JJ (2013) Yeast on the milky way: genetics, physiology and biotechnology of Kluyveromyces lactis: Kluyveromyces lactis. Yeast 30:165–177. https://doi.org/10.1002/yea.2954
Rodrussamee N, Sattayawat P, Yamada M (2018) Highly efficient conversion of xylose to ethanol without glucose repression by newly isolated thermotolerant Spathaspora passalidarum CMUWF1–2. BMC Microbiol 18. https://doi.org/10.1186/s12866-018-1218-4
Romi W, Keisam S, Ahmed G, Jeyaram K (2014) Reliable differentiation of Meyerozyma guilliermondii from Meyerozyma caribbica by internal transcribed spacer restriction fingerprinting. BMC Microbiol 14:52. https://doi.org/10.1186/1471-2180-14-52
Rosa C, Lachance M, Silva J, Teixeira A, Marini M, Antonini Y, Martins R (2003) Yeast communities associated with stingless bees. FEMS Yeast Res 4:271–275. https://doi.org/10.1016/S1567-1356(03)00173-9
Ruiz E, Cara C, Manzanares P, Ballesteros M, Castro E (2008) Evaluation of steam explosion pre-treatment for enzymatic hydrolysis of sunflower stalks. Enzym Microb Technol 42:160–166. https://doi.org/10.1016/j.enzmictec.2007.09.002
Ryabova O, Chmil O, Sibirny A (2003) Xylose and cellobiose fermentation to ethanol by the thermotolerant methylotrophic yeast. FEMS Yeast Res 4:157–164. https://doi.org/10.1016/S1567-1356(03)00146-6
Ryu S, Trinh CT (2017) Understanding functional roles of native pentose-specific transporters for activating dormant pentose metabolism in Yarrowia lipolytica. Appl Environ Microbiol 84. https://doi.org/10.1128/AEM.02146-17
Ryu S, Hipp J, Trinh CT (2016) Activating and Elucidating Metabolism of Complex Sugars in Yarrowia lipolytica. Appl Environ Microbiol 82:1334–1345. https://doi.org/10.1128/AEM.03582-15
Sampaio FC, da Silveira WB, Chaves-Alves VM, Passos FML, Coelho JLC (2003) Screening of filamentous fungi for production of xylitol from D-xylose. Braz J Microbiol 34:321–324. https://doi.org/10.1590/S1517-83822003000400007
Satish T, Murthy NYS (2010) Optimisation of xylose production using xylanase. Intl J Sci 8:909–913
Schauer F, Hanschke R (1999) Taxonomy and ecology of the genus Candida. Mycosis 42:12–21
Schreiber WT, Geib NV, Wingfield B, Acree SF (1930) Semi-commercial production of xylose. Ind Eng Chem 22:497–501. https://doi.org/10.1021/ie50245a020
Shu M, Shen W, Yang S, Wang X, Wang F, Wang Y, Ma L (2016) High-level expression and characterization of a novel serine protease in Pichia pastoris by multi-copy integration. Enzym Microb Technol 92:56–66. https://doi.org/10.1016/j.enzmictec.2016.06.007
Slininger PJ, Bothast RJ, Van Cauwenberge JE, Kurtzman CP (1982) Conversion of D-xylose to ethanol by the yeastPachysolen tannophilus. Biotechnol Bioeng 24:371–384. https://doi.org/10.1002/bit.260240210
Song KH, Song JY, Hong SG, Baek H, Kim SY, Hyun HH (2002) Production of mannitol by a novel strain of Candida magnoliae. Biotechnol Lett 24:9–12
Spagnuolo M, Shabbir Hussain M, Gambill L, Blenner M (2018) Alternative substrate metabolism in Yarrowia lipolytica. Front Microbiol 9. https://doi.org/10.3389/fmicb.2018.01077
Spencer JFT, Spencer DM (eds) (1997) Yeasts in natural and artificial habitats. Springer, Berlin/Heidelberg
Spohner SC, Schaum V, Quitmann H, Czermak P (2016) Kluyveromyces lactis: an emerging tool in biotechnology. J Biotechnol 222:104–116. https://doi.org/10.1016/j.jbiotec.2016.02.023
Sreekrishna K, Kropp KE (1996) Pichia pastoris. In: Nonconventional yeasts in biotechnology. Springer, Berlin/Heidelberg, pp 203–253
Stambuk BU, Franden MA, Singh A, Zhang M (2003) D-xylose transport by Candida succiphila and Kluyveromyces marxianus. Appl Biochem Biotechnol 106:255–264. https://doi.org/10.1385/ABAB:106:1-3:255
Stenderup A, Bak AL (1968) Deoxyribonucleic acid base composition of some species within the genus Candida. J Gen Microbiol 52:231–236
Stephanopoulos G TM (2013) Engineered microbes and methods for microbial oil overproduction from cellulosic materials
Su Y-K, Willis LB, Jeffries TW (2015) Effects of aeration on growth, ethanol and polyol accumulation by Spathaspora passalidarum NRRL Y-27907 and Scheffersomyces stipitis NRRL Y-7124: Aeration Effects on Xylose Fermenting Yeasts. Biotechnol Bioeng 112:457–469. https://doi.org/10.1002/bit.25445
Su Y-K, Willis LB, Rehmann L, Smith DR, Jeffries TW (2018) Spathaspora passalidarum selected for resistance to AFEX hydrolysate shows decreased cell yield. FEMS Yeast Res 18. https://doi.org/10.1093/femsyr/foy011
Suh S-O, Marshall CJ, Mchugh JV, Blackwell M (2003) Wood ingestion by passalid beetles in the presence of xylose-fermenting gut yeasts: gut yeasts of passalid beetles. Mol Ecol 12:3137–3145. https://doi.org/10.1046/j.1365-294X.2003.01973.x
Sun J, Ding S-Y, Doran-Peterson J (2013) Chapter 1: biomass and its biorefinery: novel approaches from nature-inspired strategies and technology. In: Sun J, Ding S-Y, Peterson JD (eds) Energy and environment series. Royal Society of Chemistry, Cambridge, pp 1–13
Swain MR, Krishnan C (2015) Improved conversion of rice straw to ethanol and xylitol by combination of moderate temperature ammonia pretreatment and sequential fermentation using Candida tropicalis. Ind Crop Prod 77:1039–1046. https://doi.org/10.1016/j.indcrop.2015.10.013
Tizazu BZ, Roy K, Moholkar VS (2018) Ultrasonic enhancement of xylitol production from sugarcane bagasse using immobilized Candida tropicalis MTCC 184. Bioresour Technol 268:247–258. https://doi.org/10.1016/j.biortech.2018.07.141
Tsai CT, Huang C-T (2008) Overexpression of the Neocallimastix frontalis xylanase gene in the methylotrophic yeasts Pichia pastoris and Pichia methanolica. Enzym Microb Technol 42:459–465. https://doi.org/10.1016/j.enzmictec.2008.01.018
Tsigie YA, Wang C-Y, Truong C-T, Ju Y-H (2011) Lipid production from Yarrowia lipolytica Po1g grown in sugarcane bagasse hydrolysate. Bioresour Technol 102:9216–9222. https://doi.org/10.1016/j.biortech.2011.06.047
Urbina H, Blackwell M (2012) Multilocus phylogenetic study of the scheffersomyces yeast clade and characterization of the N-terminal region of xylose reductase gene. PLoS ONE 7. https://doi.org/10.1371/journal.pone.0039128
Vallejos ME, Chade M, Mereles EB, Bengoechea DI, Brizuela JG, Felissia FE, Area MC (2016) Strategies of detoxification and fermentation for biotechnological production of xylitol from sugarcane bagasse. Ind Crop Prod 91:161–169. https://doi.org/10.1016/j.indcrop.2016.07.007
van der Walt JP (1965) The emendation of the genus Kluyveromyces v. d. Walt. Antonie Van Leeuwenhoek 31:341–348
van der Walt JP, von Arx JA (1980) The yeast genus Yarrowia gen. nov. Antonie Van Leeuwenhoek 46:517–521. https://doi.org/10.1007/BF00394008
van Ooyen AJJ, Dekker P, Huang M, Olsthoorn MMA, Jacobs DI, Colussi PA, Taron CH (2006) Heterologous protein production in the yeast Kluyveromyces lactis. FEMS Yeast Res 6:381–392. https://doi.org/10.1111/j.1567-1364.2006.00049.x
van Wyk JP (2001) Biotechnology and the utilization of biowaste as a resource for bioproduct development. Trends Biotechnol 19:172–177
Varela JA, Gethins L, Stanton C, Ross P, Morrissey JP (2017) Applications of Kluyveromyces marxianus in biotechnology. In: Satyanarayana T, Kunze G (eds) Yeast diversity in human welfare. Springer, Singapore, pp 439–453
Varize CS, Cadete RM, Lopes LD, Christofoleti-Furlan RM, Lachance M-A, Rosa CA, Basso LC (2018) Spathaspora piracicabensis f. a., sp. nov., a d-xylose-fermenting yeast species isolated from rotting wood in Brazil. Antonie Van Leeuwenhoek 111:525–531. https://doi.org/10.1007/s10482-017-0974-8
Vaz de Arruda P, dos Santos JC, de Cássia Lacerda Brambilla Rodrigues R, da Silva DDV, Yamakawa CK, de Moraes Rocha GJ, Júnior JN, da Cruz Pradella JG, Vaz Rossell CE, das Graças de Almeida Felipe M (2017) Scale up of xylitol production from sugarcane bagasse hemicellulosic hydrolysate by Candida guilliermondii FTI 20037. J Ind Eng Chem 47:297–302. https://doi.org/10.1016/j.jiec.2016.11.046
Venkateswar Rao L, Goli JK, Gentela J, Koti S (2015) Bioconversion of lignocellulosic biomass to xylitol: an overview. Bioresour Technol 213:299–310. https://doi.org/10.1016/j.biortech.2016.04.092
Veras HCT, Parachin NS, Almeida JRM (2017) Comparative assessment of fermentative capacity of different xylose-consuming yeasts. Microb Cell Factories 16. https://doi.org/10.1186/s12934-017-0766-x
Verduyn C, Van Kleef R, Frank J, Schreuder H, Van Dijken JP, Scheffers WA (1985) Properties of the NAD(P)H-dependent xylose reductase from the xylose-fermenting yeast Pichia stipitis. Biochem J 226:669–677
Wang PY, Shopsis C, Schneider H (1980) Fermentation of a pentose by yeasts. Biochem Biophys Res Commun 94:248–254. https://doi.org/10.1016/S0006-291X(80)80213-0
Wang Y, Ren Y-C, Zhang Z-T, Ke T, Hui F-L (2016) Spathaspora allomyrinae sp. nov., a d-xylose-fermenting yeast species isolated from a scarabeid beetle Allomyrina dichotoma. Int J Syst Evol Microbiol 66:2008–2012. https://doi.org/10.1099/ijsem.0.000979
Wannawilai S, Chisti Y, Sirisansaneeyakul S (2017) A model of furfural-inhibited growth and xylitol production by Candida magnoliae TISTR 5663. Food Bioprod Process 105:129–140. https://doi.org/10.1016/j.fbp.2017.07.002
Webb SR, Lee H (1990) Regulation of d-xylose utilization by hexoses in pentose-fermenting yeasts. Biotechnol Adv 8:685–697. https://doi.org/10.1016/0734-9750(90)91991-O
Wei L, Liu J, Qi H, Wen J (2015) Engineering Scheffersomyces stipitis for fumaric acid production from xylose. Bioresour Technol 187:246–254. https://doi.org/10.1016/j.biortech.2015.03.122
Wickerham LJ, Burton KA (1954) A clarification of the relationship of Candida Guilliermondii to other yeasts by a study of their mating types. J Bacteriol 68(5):594–597
Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, LaButti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, Dale BE, Jeffries TW, Zinkel R, Barry KW, Grigoriev IV, Gasch AP (2011a) Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proc Natl Acad Sci 108:13212–13217. https://doi.org/10.1073/pnas.1103039108
Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, LaButti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, Dale BE, Jeffries TW, Zinkel R, Barry KW, Grigoriev IV, Gasch AP (2011b) Comparative genomics of xylose-fermenting fungi for enhanced biofuel production. Proc Natl Acad Sci 108:13212–13217. https://doi.org/10.1073/pnas.1103039108
Wrent P, Rivas EM, Peinado JM, de Silóniz MI (2016) Development of an affordable typing method for Meyerozyma guilliermondii using microsatellite markers. Int J Food Microbiol 217:1–6. https://doi.org/10.1016/j.ijfoodmicro.2015.10.008
Yaguchi A, Spagnuolo M, Blenner M (2018) Engineering yeast for utilization of alternative feedstocks. Curr Opin Biotechnol 53:122–129. https://doi.org/10.1016/j.copbio.2017.12.003
Yamada Y, Kondo K (1972) Taxonomic significance of coenzyme Q system in yeasts and yeast-like fungi (1). Yeast 363:373
Yamada Y, Maeda K, Mikata K (1994) The Phylogenetic Relationships of the Hat-shaped Ascospore-forming, Nitrate-assimilating Pichia Species, Formerly Classified in the Genus Hansenula S ydow et S ydow , Based on the Partial Sequences of 18S and 26S Ribosomal RNAs (Saccharomycetaceae): The Proposals of Three New Genera, Ogataea , Kuraishia , and Nakazawaea. Biosci Biotechnol Biochem 58:1245–1257. https://doi.org/10.1271/bbb.58.1245
Yan Y, Zhang X, Zheng X, Apaliya MT, Yang Q, Zhao L, Gu X, Zhang H (2018) Control of postharvest blue mold decay in pears by Meyerozyma guilliermondii and it’s effects on the protein expression profile of pears. Postharvest Biol Technol 136:124–131. https://doi.org/10.1016/j.postharvbio.2017.10.016
Yang Z, Zhang Z (2018) Engineering strategies for enhanced production of protein and bio-products in Pichia pastoris: a review. Biotechnol Adv 36:182–195. https://doi.org/10.1016/j.biotechadv.2017.11.002
Yang SW, Park JB, Han NS, Ryu YW, Seo JH (1999) Production of erythritol from glucose by an osmophilic mutant of Candida magnolia. Biotechnol Lett 21:887–890
Yang L, He QS, Corscadden K, Udenigwe CC (2015) The prospects of Jerusalem artichoke in functional food ingredients and bioenergy production. Biotechnol Rep 5:77–88. https://doi.org/10.1016/j.btre.2014.12.004
Yarrow D (1998) Methods for the isolation, maintenance and identification of yeasts. In: The yeasts. Elsevier, Amsterdam, pp 77–100
Yurkov AM, Dlauchy D, Péter G (2017) Meyerozyma amylolytica sp. nov. from temperate deciduous trees and the transfer of five candida species to the genus meyerozyma. Int J Syst Evol Microbiol 67:3977–3981. https://doi.org/10.1099/ijsem.0.002232
Yuvadetkun P, Reungsang A, Boonmee M (2018) Comparison between free cells and immobilized cells of Candida shehatae in ethanol production from rice straw hydrolysate using repeated batch cultivation. Renew Energy 115:634–640. https://doi.org/10.1016/j.renene.2017.08.033
Zhang J, Geng A, Yao C, Lu Y, Li Q (2012) Xylitol production from d-xylose and horticultural waste hemicellulosic hydrolysate by a new isolate of Candida athensensis SB18. Bioresour Technol 105:134–141. https://doi.org/10.1016/j.biortech.2011.11.119
Zhang H-J, Fan X-G, Qiu X-L, Zhang Q-X, Wang W-Y, Li S-X, Deng L-H, Koffas MAG, Wei D-S, Yuan Q-P (2014) A novel cleaning process for industrial production of xylose in pilot scale from corncob by using screw-steam-explosive extruder. Bioprocess Biosyst Eng 37:2425–2436. https://doi.org/10.1007/s00449-014-1219-0
Zhang J, Zhang B, Wang D, Gao X, Sun L, Hong J (2015) Rapid ethanol production at elevated temperatures by engineered thermotolerant Kluyveromyces marxianus via the NADP(H)-preferring xylose reductase-xylitol dehydrogenase pathway. Metab Eng 31:140–152. https://doi.org/10.1016/j.ymben.2015.07.008
Zhang B, Zhang J, Wang D, Han R, Ding R, Gao X, Sun L, Hong J (2016) Simultaneous fermentation of glucose and xylose at elevated temperatures co-produces ethanol and xylitol through overexpression of a xylose-specific transporter in engineered Kluyveromyces marxianus. Bioresour Technol 216:227–237. https://doi.org/10.1016/j.biortech.2016.05.068
Zhao J, Mou Y, Shan T, Li Y, Zhou L, Wang M, Wang J (2010) Antimicrobial metabolites from the endophytic fungus pichia guilliermondii Isolated from Paris polyphylla var. yunnanensis. Molecules 15:7961–7970. https://doi.org/10.3390/molecules15117961
Zhao C, Gu D, Nambou K, Wei L, Chen J, Imanaka T, Hua Q (2015) Metabolome analysis and pathway abundance profiling of Yarrowia lipolytica cultivated on different carbon sources. J Biotechnol 206:42–51. https://doi.org/10.1016/j.jbiotec.2015.04.005
Zhou W-J, Yang J-K, Mao L, Miao L-H (2015) Codon optimization, promoter and expression system selection that achieved high-level production of Yarrowia lipolytica lipase in Pichia pastoris. Enzym Microb Technol 71:66–72. https://doi.org/10.1016/j.enzmictec.2014.10.007
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Bergmann, J.C. et al. (2019). Biotechnological Application of Non-conventional Yeasts for Xylose Valorization. In: Sibirny, A. (eds) Non-conventional Yeasts: from Basic Research to Application. Springer, Cham. https://doi.org/10.1007/978-3-030-21110-3_2
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