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Visual Analysis for Understanding Irritable Bowel Syndrome

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Biomedical Visualisation

Abstract

The cause of irritable bowel syndrome (IBS), a chronic disorder characterized by abdominal pain and disturbed bowel habits, is largely unknown. It is believed to be related to physical properties in the gut, central mechanisms in the brain, psychological factors, or a combination of these. To understand the relationships within the gut-brain axis with respect to IBS, large numbers of measurements ranging from stool samples to functional magnetic resonance imaging are collected from patients with IBS and healthy controls. As such, IBS is a typical example in medical research where research turns into a big data analysis challenge. In this chapter we demonstrate the power of interactive visual data analysis and exploration to generate an environment for scientific reasoning and hypothesis formulation for data from multiple sources with different character. Three case studies are presented to show the utility of the presented work.

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References

  • Carr DB, Littlefield RJ, Nicholson W, Littlefield J (1987) Scatterplot matrix techniques for large n. J Am Stat Assoc 82(398):424–436

    Google Scholar 

  • Chey WD, Kurlander J, Eswaran S (2015) Irritable bowel syndrome: a clinical review. JAMA 313(9):949–958

    Article  CAS  Google Scholar 

  • Eaton C, Plaisant C, Drizd T (2005) Visualizing missing data: graph interpretation user study. In: IFIP conference on human-computer interaction. Springer, Berlin, pp 861–872

    Google Scholar 

  • Eklund A, Andersson M, Ohlsson H, Ynnerman A, Knutsson H (2010) A brain computer interface for communication using real-time FMRI. In: Pattern Recognition (ICPR), 2010 20th International Conference on, IEEE. Springer, Berlin, pp 3665–3669

    Chapter  Google Scholar 

  • Inselberg A (1985) The plane with parallel coordinates. Vis Comput 1(2):69–91

    Article  Google Scholar 

  • Jankowai J, Hotz I (2018) Feature level-sets: generalizing ISO-surfaces to multivariate data. IEEE Trans Vis Comput Graph. https://doi.org/10.1109/TVCG.2018.2867488

  • Jönsson D, Ynnerman A (2017) Correlated photon mapping for interactive global illumination of time-varying volumetric data. IEEE Trans Vis Comput Graph 23(1):901–910

    Article  Google Scholar 

  • Jönsson D, Sundén E, Ynnerman A, Ropinski T (2014) A survey of volumetric illumination techniques for interactive volume rendering. Comput Grap Forum 33(1):27–51

    Article  Google Scholar 

  • Jönsson D, Steneteg P, Sundén E, Englund R, Kottravel S, Falk M, Ynnerman A, Hotz I, Ropinski T (2018) Inviwo – a visualization system with usage abstraction levels. ArXiv e-prints arXiv:1811.12517

    Google Scholar 

  • Nguyen TK, Ohlsson H, Eklund A, Hernell F, Ljung P, Forsell C, Andersson M, Knutsson H, Ynnerman A (2010) Concurrent volume visualization of realtime FMRI. In: 8th IEEE/EG international symposium on volume graphics, Norrköping, Sweden, 2–3 May, 2010, Eurographics-European Association for Computer Graphics, pp 53–60

    Google Scholar 

  • Reininghaus J, Günther D, Hotz I, Prohaska S, Hege HC (2010) TADD: a computational framework for data analysis using discrete Morse theory. In: Proceedings of the international congress on mathematical software (ICMS). Springer, Berlin

    Google Scholar 

  • Siegel JH, Farrell EJ, Goldwyn RM, Friedman HP (1972) The surgical implications of physiologic patterns in myocardial infarction shock. Surgery 72(1):126–141

    CAS  PubMed  Google Scholar 

  • Siirtola H, Räihä KJ (2006) Interacting with parallel coordinates. Interact Comput 18(6):1278–1309. https://doi.org/10.1016/j.intcom.2006.03.006

    Article  Google Scholar 

  • Sundén E, Kottravel S, Ropinski T (2015) Multimodal volume illumination. Comput Graph 50:47–60

    Article  Google Scholar 

  • Welch BL (1947) The generalization of student’s problem when several different population variances are involved. Biometrika 34(1/2):28–35

    Article  CAS  Google Scholar 

  • Whitfield-Gabrieli S, Nieto-Castanon A (2012) Conn: a functional connectivity toolbox for correlated and anticorrelated brain networks. Brain Connect 2(3):125–141

    Article  Google Scholar 

Download references

Acknowledgements

This work was supported through grants ‘Seeing Organ Function’ from the Knut and Alice Wallenberg Foundation (KAW) grant 2013-0076, the Swedish research council grant 2015-05462, the SeRC (Swedish e-Science Research Center) and the ELLIIT environment for strategic research in Sweden. The presented concepts have been realized using the Inviwo open source visualization framework (www.inviwo.org) presented by Jönsson et al. (2018).

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Correspondence to Daniel Jönsson .

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Jönsson, D. et al. (2019). Visual Analysis for Understanding Irritable Bowel Syndrome. In: Rea, P. (eds) Biomedical Visualisation . Advances in Experimental Medicine and Biology, vol 1156. Springer, Cham. https://doi.org/10.1007/978-3-030-19385-0_8

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