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Diagnostic Approach to Mitochondrial Diseases

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Book cover Diagnosis and Management of Mitochondrial Disorders

Abstract

The diagnosis of mitochondrial diseases is not straightforward and involves the interaction between clinicians, radiologists and laboratory scientists. Over the past years, the development of novel diagnostic techniques and our growing understanding of mitochondrial pathophysiology have altered the clinical diagnostic approach in suspected mitochondrial cases. With the increased availability of next-generation sequencing, including targeted panels, whole-exome sequencing (WES) and whole-genome sequencing (WGS), most diagnostic centres have changed their diagnostic strategy in suspected mitochondrial disease. While over the past 20 years the muscle biopsy played a central role and guided the diagnostic process, in recent years, massively parallel sequencing (MPS) has become more and more popular as a first-line diagnostic test. An unbiased genetic approach enables the diagnosis of novel genes and overlapping phenotypes with a potentially treatable secondary mitochondrial defect and also facilitates the enrolment of patients into clinical trials which require molecular confirmation of mitochondrial disease. Biochemical investigations remain important for the investigation of cases that cannot be solved using a first-line genetic approach, including the functional validation of novel genetic findings. However, their role will become less important as we increase our understanding of the genetic basis of mitochondrial disorders.

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References

  1. Gorman GS, Chinnery PF, DiMauro S, Hirano M, Koga Y, McFarland R, Suomalainen A, Thorburn DR, Zeviani M, Turnbull DM. Mitochondrial diseases. Nat Rev Dis Primers. 2016;2:16080.

    Article  PubMed  Google Scholar 

  2. Horvath R, Chinnery PF. The effect of neurological genomics and personalized mitochondrial medicine. JAMA Neurol. 2017;74(1):11–3.

    Article  PubMed  Google Scholar 

  3. Morava E, van den Heuvel L, Hol F, de Vries MC, Hogeveen M, Rodenburg RJ, Smeitink JA. Mitochondrial disease criteria: diagnostic applications in children. Neurology. 2006;67(10):1823–6.

    Article  CAS  PubMed  Google Scholar 

  4. Lake NJ, Compton AG, Rahman S, Thorburn DR. Leigh syndrome: one disorder, more than 75 monogenic causes. Ann Neurol. 2016;79(2):190–203.

    Article  PubMed  Google Scholar 

  5. Horvath R, Hudson G, Ferrari G, Fütterer N, Ahola S, Lamantea E, Prokisch H, Lochmüller H, McFarland R, Ramesh V, Klopstock T, Freisinger P, Salvi F, Mayr JA, Santer R, Tesarova M, Zeman J, Udd B, Taylor RW, Turnbull D, Hanna M, Fialho D, Suomalainen A, Zeviani M, Chinnery PF. Phenotypic spectrum associated with mutations of the mitochondrial polymerase gamma gene. Brain. 2006;129(Pt 7):1674–84.

    Article  PubMed  Google Scholar 

  6. Fratter C, Gorman GS, Stewart JD, Buddles M, Smith C, Evans J, Seller A, Poulton J, Roberts M, Hanna MG, Rahman S, Omer SE, Klopstock T, Schoser B, Kornblum C, Czermin B, Lecky B, Blakely EL, Craig K, Chinnery PF, Turnbull DM, Horvath R, Taylor RW. The clinical, histochemical, and molecular spectrum of PEO1 (Twinkle)-linked adPEO. Neurology. 2010;74(20):1619–26.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Pitceathly RD, Smith C, Fratter C, Alston CL, He L, Craig K, Blakely EL, Evans JC, Taylor J, Shabbir Z, Deschauer M, Pohl U, Roberts ME, Jackson MC, Halfpenny CA, Turnpenny PD, Lunt PW, Hanna MG, Schaefer AM, McFarland R, Horvath R, Chinnery PF, Turnbull DM, Poulton J, Taylor RW, Gorman GS. Adults with RRM2B-related mitochondrial disease have distinct clinical and molecular characteristics. Brain. 2012;135(Pt 11):3392–403.

    Article  PubMed  PubMed Central  Google Scholar 

  8. Wedatilake Y, Brown RM, McFarland R, Yaplito-Lee J, Morris AA, Champion M, Jardine PE, Clarke A, Thorburn DR, Taylor RW, Land JM, Forrest K, Dobbie A, Simmons L, Aasheim ET, Ketteridge D, Hanrahan D, Chakrapani A, Brown GK, Rahman S. SURF1 deficiency: a multi-centre natural history study. Orphanet J Rare Dis. 2013;8:96.

    Article  PubMed  PubMed Central  Google Scholar 

  9. Steele HE, Horvath R, Lyon JJ, Chinnery PF. Monitoring clinical progression with mitochondrial disease biomarkers. Brain. 2017;140(10):2530–40.

    Article  PubMed  PubMed Central  Google Scholar 

  10. de Beaurepaire I, Grévent D, Rio M, Desguerre I, de Lonlay P, Levy R, Dangouloff-Ros V, Bonnefont JP, Barcia G, Funalot B, Besmond C, Metodiev MD, Ruzzenente B, Assouline Z, Munnich A, Rötig A, Boddaert N. High predictive value of brain MRI imaging in primary mitochondrial respiratory chain deficiency. J Med Genet. 2018;55(6):378–83.

    PubMed  Google Scholar 

  11. Alston CL, Rocha MC, Lax NZ, Turnbull DM, Taylor RW. The genetics and pathology of mitochondrial disease. J Pathol. 2017;241(2):236–50.

    Article  CAS  PubMed  Google Scholar 

  12. Rocha MC, Grady JP, Grünewald A, Vincent A, Dobson PF, Taylor RW, Turnbull DM, Rygiel KA. A novel immunofluorescent assay to investigate oxidative phosphorylation deficiency in mitochondrial myopathy: understanding mechanisms and improving diagnosis. Sci Rep. 2015;5:15037.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Taylor RW, Pyle A, Griffin H, et al. Use of whole-exome sequencing to determine the genetic basis of multiple mitochondrial respiratory chain complex deficiencies. JAMA. 2014;312(1):68–77.

    Article  PubMed  PubMed Central  Google Scholar 

  14. Calvo SE, Compton AG, Hershman SG, et al. Molecular diagnosis of infantile mitochondrial disease with targeted next-generation sequencing. Sci Transl Med. 2012;4(118):118ra10.

    Article  PubMed  PubMed Central  Google Scholar 

  15. Pyle A, Nightingale HJ, Griffin H, Abicht A, Kirschner J, Baric I, Cuk M, Douroudis K, Feder L, Kratz M, Czermin B, Kleinle S, Santibanez-Koref M, Karcagi V, Holinski-Feder E, Chinnery PF, Horvath R. Respiratory chain deficiency in nonmitochondrial disease. Neurol Genet. 2015;1(1):e6.

    Article  PubMed  PubMed Central  Google Scholar 

  16. Stepien KM, Heaton R, Rankin S, Murphy A, Bentley J, Sexton D, Hargreaves IP Evidence of oxidative stress and secondary mitochondrial dysfunction in metabolic and non-metabolic disorders. J Clin Med. 2017;6(7). https://doi.org/10.3390/jcm6070071.

    Article  PubMed Central  Google Scholar 

  17. DiMauro S, Schon EA, Carelli V, Hirano M. The clinical maze of mitochondrial neurology. Nat Rev Neurol. 2013;9(8):429–44.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Saada A. Mitochondria: mitochondrial OXPHOS (dys) function ex vivo – the use of primary fibroblasts. Int J Biochem Cell Biol. 2014;48:60–5.

    Article  CAS  PubMed  Google Scholar 

  19. Plutino M, Chaussenot A, Rouzier C, Ait-El-Mkadem S, Fragaki K, Paquis-Flucklinger V, Bannwarth S. Targeted next generation sequencing with an extended gene panel does not impact variant detection in mitochondrial diseases. BMC Med Genet. 2018;19(1):57.

    Article  PubMed  PubMed Central  Google Scholar 

  20. Parikh S, Goldstein A, Koenig MK, et al. Diagnosis and management of mitochondrial disease: a consensus statement from the Mitochondrial Medicine Society. Genet Med. 2015;17(9):689–701.

    Article  CAS  PubMed  Google Scholar 

  21. Craven L, Alston CL, Taylor RW, Turnbull DM. Recent advances in mitochondrial disease. Annu Rev Genomics Hum Genet. 2017;18:257–75.

    Article  CAS  PubMed  Google Scholar 

  22. Frazier AE, Thorburn DR, Compton AG. Mitochondrial energy generation disorders: genes, mechanisms and clues to pathology. J Biol Chem. 2017; https://doi.org/10.1074/jbc.R117.809194.

    Article  PubMed  PubMed Central  Google Scholar 

  23. Vafai SB, Mootha VK. Mitochondrial disorders as windows into an ancient organelle. Nature. 2012;491(7424):374–83.

    Article  CAS  PubMed  Google Scholar 

  24. Morava E, Brown GK. Next generation mitochondrial disease: change in diagnostics with eyes on therapy. J Inherit Metab Dis. 2015;38(3):387–8.

    Article  PubMed  Google Scholar 

  25. Wortmann SB, Koolen DA, Smeitink JA, van den Heuvel L, Rodenburg RJ. Whole exome sequencing of suspected mitochondrial patients in clinical practice. J Inherit Metab Dis. 2015;38(3):437–43.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Kohda M, Tokuzawa Y, Kishita Y, Nyuzuki H, Moriyama Y, Mizuno Y, Hirata T, Yatsuka Y, Yamashita-Sugahara Y, Nakachi Y, Kato H, Okuda A, Tamaru S, Borna NN, Banshoya K, Aigaki T, Sato-Miyata Y, Ohnuma K, Suzuki T, Nagao A, Maehata H, Matsuda F, Higasa K, Nagasaki M, Yasuda J, Yamamoto M, Fushimi T, Shimura M, Kaiho-Ichimoto K, Harashima H, Yamazaki T, Mori M, Murayama K, Ohtake A, Okazaki Y. A comprehensive genomic analysis reveals the genetic landscape of mitochondrial respiratory chain complex deficiencies. PLoS Genet. 2016;12(1):e1005679.

    Article  PubMed  PubMed Central  Google Scholar 

  27. Griffin HR, Pyle A, Blakely EL, Alston CL, Duff J, Hudson G, Horvath R, Wilson IJ, Santibanez-Koref M, Taylor RW, Chinnery PF. Accurate mitochondrial DNA sequencing using off-target reads provides a single test to identify pathogenic point mutations. Genet Med. 2014;16(12):962–71.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Witters P, Saada A, Honzik T, Tesarova M, Kleinle S, Horvath R, Goldstein A, Morava E. Revisiting mitochondrial diagnostic criteria in the new era of genomics. Genet Med. 2018;20(4):444–51.

    Article  CAS  PubMed  Google Scholar 

  29. Raymond FL, Horvath R, Chinnery PF. First-line genomic diagnosis of mitochondrial disorders. Nat Rev Genet. 2018;19(7):399–400.

    Article  CAS  PubMed  Google Scholar 

  30. Kremer LS, Bader DM, Mertes C, Kopajtich R, Pichler G, Iuso A, Haack TB, Graf E, Schwarzmayr T, Terrile C, Koňaříková E, Repp B, Kastenmüller G, Adamski J, Lichtner P, Leonhardt C, Funalot B, Donati A, Tiranti V, Lombes A, Jardel C, Gläser D, Taylor RW, Ghezzi D, Mayr JA, Rötig A, Freisinger P, Distelmaier F, Strom TM, Meitinger T, Gagneur J, Prokisch H. Genetic diagnosis of Mendelian disorders via RNA sequencing. Nat Commun. 2017;8:15824.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Zhang Y, Avalos JL. Traditional and novel tools to probe the mitochondrial metabolism in health and disease. Wiley Interdiscip Rev Syst Biol Med. 2017;9(2). https://doi.org/10.1002/wsbm.1373.

    Google Scholar 

  32. Grier J, Hirano M, Karaa A, Shepard E, Thompson JLP. Diagnostic odyssey of patients with mitochondrial disease: results of a survey. Neurol Genet. 2018;4(2):e230.

    Article  PubMed  PubMed Central  Google Scholar 

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Correspondence to Rita Horvath .

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Horvath, R., Chinnery, P.F. (2019). Diagnostic Approach to Mitochondrial Diseases. In: Mancuso, M., Klopstock, T. (eds) Diagnosis and Management of Mitochondrial Disorders. Springer, Cham. https://doi.org/10.1007/978-3-030-05517-2_17

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  • DOI: https://doi.org/10.1007/978-3-030-05517-2_17

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-05516-5

  • Online ISBN: 978-3-030-05517-2

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