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High Efficient Reconstruction of Single-Shot Magnetic Resonance \(T_{2}\) Mapping Through Overlapping Echo Detachment and DenseNet

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Neural Information Processing (ICONIP 2018)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 11306))

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Abstract

Rapid and quantitative magnetic resonance \(T_{2}\) imaging plays an important role in medical imaging field. However, the existing quantitative \(T_{2}\) mapping method are usually time-consuming and sensitive to motion artifacts. Recently, a novel single-shot quantitative parameter mapping method based on overlapped-echo detachment technique has been proposed by us, but an efficient reconstruction algorithm is necessary. In this paper, a multi-stage DenseNet was utilized to reconstruct single-shot \(T_{2}\) mapping efficiently. The contributions of the paper mainly include the following aspects. First, an end-to-end neural network is proposed, which can directly obtain the reconstructed images without any secondary processing. Second, DenseNet was introduced into the reconstruction network to better reuse the features. Third, a weighted Euclidean loss function is proposed, which can be better used for image reconstruction.

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References

  1. Ma, D., et al.: Magnetic resonance fingerprinting. Nature 495(7440), 187–192 (2013)

    Article  Google Scholar 

  2. Townsend, T.N., Bernasconi, N., Pike, G.B., Bernasconi, A.: Quantitative analysis of temporal lobe white matter t2 relaxation time in temporal lobe epilepsy. Neuroimage 23(1), 318–324 (2004)

    Article  Google Scholar 

  3. Cai, C., et al.: Single-shot t2 mapping through overlapping-echo detachment (OLED) planar imaging. IEEE Trans. Biomed. Eng. 64(10), 2450–2461 (2017)

    Article  Google Scholar 

  4. Ma, L., et al.: Motion-tolerant diffusion mapping based on single-shot overlapping-echo detachment (OLED) planar imaging. Magn. Reson. Med. 80(1), 200–210 (2018)

    Article  Google Scholar 

  5. Pereira, S., Pinto, A., Alves, V., Silva, C.A.: Brain tumor segmentation using convolutional neural networks in MRI images. IEEE Trans. Med. Imaging 35(5), 1240–1251 (2016)

    Article  Google Scholar 

  6. Dou, Q., Chen, H., Jin, Y., Lin, H., Qin, J., Heng, P.-A.: Automated pulmonary nodule detection via 3D convnets with online sample filtering and hybrid-loss residual learning. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 630–638. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_72

    Chapter  Google Scholar 

  7. Han, S.S., Kim, M.S., Lim, W., Park, G.H., Park, I., Chang, S.E.: Classification of the clinical images for benign and malignant cutaneous tumors using a deep learning algorithm. Journal of Investigative Dermatology (2018)

    Google Scholar 

  8. Cai, C., et al.: Single-shot t2 mapping using overlapping-echo detachment planar imaging and a deep convolutional neural network. Magnetic resonance in medicine (2018)

    Google Scholar 

  9. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  10. He, K., Sun, J., Tang, X.: Guided image filtering. IEEE Trans. Pattern Anal. Mach. Intell. 35(6), 1397–1409 (2013)

    Article  Google Scholar 

  11. Huang, G., Liu, Z., Weinberger, K.Q., van der Maaten, L.: Densely connected convolutional networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, vol. 1, p. 3 (2017)

    Google Scholar 

  12. Cai, C., Lin, M., Chen, Z., Chen, X., Cai, S., Zhong, J.: Sprom-an efficient program for NMR/MRI simulations of inter-and intra-molecular multiple quantum coherences. Comptes Rendus Physique 9(1), 119–126 (2008)

    Article  Google Scholar 

  13. He, K., Zhang, X., Ren, S., Sun, J.: Spatial pyramid pooling in deep convolutional networks for visual recognition. IEEE Trans. Pattern Anal. Mach. Intell. 37(9), 1904–1916 (2015)

    Article  Google Scholar 

  14. Ioffe, S., Szegedy, C.: Batch normalization: Accelerating deep network training by reducing internal covariate shift. arXiv preprint arXiv:1502.03167 (2015)

  15. Glorot, X., Bordes, A., Bengio, Y.: Deep sparse rectifier neural networks. In: Proceedings of the Fourteenth International Conference on Artificial Intelligence and Statistics, pp. 315–323 (2011)

    Google Scholar 

  16. Tieleman, T., Hinton, G.: Rmsprop gradient optimization (2014). http://www.cs.toronto.edu/tijmen/csc321/slides/lecture_slides_lec6.pdf

  17. Glorot, X., Bengio, Y.: Understanding the difficulty of training deep feedforward neural networks. In: Proceedings of the Thirteenth International Conference on Artificial Intelligence and Statistics, pp. 249–256 (2010)

    Google Scholar 

  18. Abadi, M., et al.: TensorFlow: large-scale machine learning on heterogeneous distributed systems. arXiv preprint arXiv:1603.04467 (2016)

Download references

Acknowledgement

This work was supported by National Natural Science Foundation of China; Grant numbers: 81671674 and 61571382.

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Correspondence to Congbo Cai .

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Wang, C., Wu, Y., Ding, X., Huang, Y., Cai, C. (2018). High Efficient Reconstruction of Single-Shot Magnetic Resonance \(T_{2}\) Mapping Through Overlapping Echo Detachment and DenseNet. In: Cheng, L., Leung, A., Ozawa, S. (eds) Neural Information Processing. ICONIP 2018. Lecture Notes in Computer Science(), vol 11306. Springer, Cham. https://doi.org/10.1007/978-3-030-04224-0_35

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  • DOI: https://doi.org/10.1007/978-3-030-04224-0_35

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  • Online ISBN: 978-3-030-04224-0

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